View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_high_31 (Length: 344)
Name: NF1084_high_31
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_high_31 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 28 - 344
Target Start/End: Complemental strand, 4677509 - 4677195
Alignment:
| Q |
28 |
catgaataagtagttccaagatctattcccacagcacgtccttcatactttacccccatgatctttcaaataatcaaaagaagctgnnnnnnnnnnnnnn |
127 |
Q |
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| T |
4677509 |
catgaataagtagttccaagatctattcccacagcacgtccttcatactttacccccatgatctttcaaataatcaaaagaagctgaaaaaaaaaaaa-- |
4677412 |
T |
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| Q |
128 |
ntatcaagtcaagat---aagtaggaacttaattttgaaacaatacatagtannnnnnnnnncctaaaactcatgcatattctttaccggttgatttact |
224 |
Q |
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| T |
4677411 |
-tatcaagtcaagattataagtaggaacttaattttgaaacaatacatagtatttttttt--cctaaaactcatgcatattctttaccggttgatttact |
4677315 |
T |
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| Q |
225 |
ataccaagcgtgannnnnnngaattcttccaatatattttctaagattagaaagaagtagaacctttaggttttgttaccacaatgaacaacactttctt |
324 |
Q |
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|||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4677314 |
atactaagcgtgatttttttgaattcttctaatatattttctaagattagaaagaagtagaacctttaggttttgttaccacaatgaacaacactttctt |
4677215 |
T |
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| Q |
325 |
aaataggagaaacataaatt |
344 |
Q |
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| T |
4677214 |
aaataggagaaacataaatt |
4677195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 34465202 - 34465148
Alignment:
| Q |
43 |
ccaagatctattcccacagcacgtccttcatactttacccccatgatctttcaaa |
97 |
Q |
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| T |
34465202 |
ccaaggtctattcccacagcacgtccttcacattttttcgccatgatctttcaaa |
34465148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 113
Target Start/End: Original strand, 1302447 - 1302529
Alignment:
| Q |
31 |
gaataagtagttccaagatctattcccacagcacgtccttcatactttacccccatgatctttcaaataatcaaaagaagctg |
113 |
Q |
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| T |
1302447 |
gaataagtagttccaaggtctattccaacagcacgtccttcgtactttatcgccatgatctttcaaataatcaaaagaagctg |
1302529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 113
Target Start/End: Original strand, 8660380 - 8660462
Alignment:
| Q |
31 |
gaataagtagttccaagatctattcccacagcacgtccttcatactttacccccatgatctttcaaataatcaaaagaagctg |
113 |
Q |
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| T |
8660380 |
gaataggttgttccaaggtctattccaatagcacgtccttcgtactttatccccatgatcgttcaaataatcaaaagaagctg |
8660462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 8668598 - 8668641
Alignment:
| Q |
28 |
catgaataagtagttccaagatctattcccacagcacgtccttc |
71 |
Q |
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| T |
8668598 |
catgaataggttgttccaagatctattcccactgcacgtccttc |
8668641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 16656569 - 16656524
Alignment:
| Q |
28 |
catgaataagtagttccaagatctattcccacagcacgtccttcat |
73 |
Q |
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| T |
16656569 |
catgaataagttgttccaaggtctattcccactgcacgtccttcat |
16656524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 28221080 - 28221122
Alignment:
| Q |
28 |
catgaataagtagttccaagatctattcccacagcacgtcctt |
70 |
Q |
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|||||||| || ||||||||||||||||||||||||| ||||| |
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| T |
28221080 |
catgaatacgttgttccaagatctattcccacagcacatcctt |
28221122 |
T |
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