View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1084_high_34 (Length: 330)

Name: NF1084_high_34
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1084_high_34
NF1084_high_34
[»] chr3 (4 HSPs)
chr3 (99-217)||(49234533-49234651)
chr3 (99-229)||(49233950-49234080)
chr3 (208-317)||(49234400-49234509)
chr3 (220-317)||(49233829-49233926)
[»] chr1 (2 HSPs)
chr1 (99-229)||(50862397-50862527)
chr1 (220-317)||(50862551-50862648)
[»] chr8 (3 HSPs)
chr8 (156-318)||(14839077-14839240)
chr8 (220-317)||(43228108-43228205)
chr8 (132-234)||(43227984-43228089)
[»] chr7 (1 HSPs)
chr7 (156-318)||(27962450-27962613)
[»] chr2 (3 HSPs)
chr2 (220-320)||(24455872-24455972)
chr2 (132-229)||(24455752-24455848)
chr2 (220-316)||(1615125-1615221)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 49234651 - 49234533
Alignment:
Q  99 ggcatgtatttataatgctactatagtcttctgccaagatatatgcttatggaatgcgtttctttattttcatatccaaatgtgtgcttaactattcaga 198  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  49234651 ggcatgtatttacaatgctactatagtcttcttccaagatatatgcttatggaatgcgtttctttattttcatatccagatgtgtgcttaattattcaga 49234552  T
Q  199 gctggttcaaggtaatttt 217  Q
    |||||||||||||||||||    
T  49234551 gctggttcaaggtaatttt 49234533  T

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Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 99 - 229
Target Start/End: Complemental strand, 49234080 - 49233950
Alignment:
Q  99 ggcatgtattt-ataatgctactatagtcttctgccaagatatatgcttatggaatgcgtttctttattttcatatccaaatgtgtgcttaactattcag 197  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||  ||||||| |||||||||||| ||||||||||||||||||||    
T  49234080 ggcatgtattttataatgctactatagtcttcttccaaaatatatgcttatggaatgtctttcttttttttcatatccatatgtgtgcttaactattcag 49233981  T
Q  198 agctggttcaaggtaattttcttgcataattt 229  Q
    ||||||||||||||||||||| ||||||||||    
T  49233980 agctggttcaaggtaattttc-tgcataattt 49233950  T

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Target: chr3; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 208 - 317
Target Start/End: Complemental strand, 49234509 - 49234400
Alignment:
Q  208 aggtaattttcttgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagccgtgttttggtactgcagctgctacatagtggcattt 307  Q
    |||| ||||||||||||||||||||| ||||||||||||||||| |||||||| |||| |||| ||||||||||||||||||||||||||||||||||||    
T  49234509 aggtgattttcttgcataatttagagctggttttctgcatgtgggctaatgtaatgcagcagcagtgttttggtactgcagctgctacatagtggcattt 49234410  T
Q  308 tttcctccct 317  Q
    ||||||||||    
T  49234409 tttcctccct 49234400  T

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Target: chr3; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 220 - 317
Target Start/End: Complemental strand, 49233926 - 49233829
Alignment:
Q  220 tgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagccgtgttttggtactgcagctgctacatagtggcattttttcctccct 317  Q
    |||||||||||||| |||||||| |||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||    
T  49233926 tgcataatttagagctggttttcggcatgtggactaatgtagtgcagcagcagtgttttggtactacagctgctacatagtggcattctttcctccct 49233829  T

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Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 99 - 229
Target Start/End: Original strand, 50862397 - 50862527
Alignment:
Q  99 ggcatgtattt-ataatgctactatagtcttctgccaagatatatgcttatggaatgcgtttctttattttcatatccaaatgtgtgcttaactattcag 197  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||  |||||| ||||||||||||||||||||||||| ||||||||    
T  50862397 ggcatgtattttataatgctactatagtcttcttccaaaatatatgcttatggaatgtttttcttcattttcatatccaaatgtgtgcttatctattcag 50862496  T
Q  198 agctggttcaaggtaattttcttgcataattt 229  Q
    ||||||||||||||| ||||| ||||||||||    
T  50862497 agctggttcaaggtagttttc-tgcataattt 50862527  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 220 - 317
Target Start/End: Original strand, 50862551 - 50862648
Alignment:
Q  220 tgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagccgtgttttggtactgcagctgctacatagtggcattttttcctccct 317  Q
    |||||||||||||| || ||||| |||||||||||||||||||| | ||||  || |||||||||||||||| ||||||||||| |||||||||||||    
T  50862551 tgcataatttagagctgattttcggcatgtggactaatgtagtgtatcagcactgctttggtactgcagctggtacatagtggcgttttttcctccct 50862648  T

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Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 156 - 318
Target Start/End: Original strand, 14839077 - 14839240
Alignment:
Q  156 gtttctttattttcatatccaaatgt--gtgcttaactattcagagctggttcaaggtaattttcttgcataatttagagttggttttctgcatgtggac 253  Q
    |||||||||||||||||| || ||||  |||||||||||||||||||||||||||||||||||||   |||| ||||||| |||||||| |||| |||||    
T  14839077 gtttctttattttcatattcagatgtttgtgcttaactattcagagctggttcaaggtaattttcga-catagtttagagctggttttcagcatatggac 14839175  T
Q  254 taatgtagtgcaacagccgtgttttggtactgcagctgctacatagtggcattttttcctcccta 318  Q
    ||||||| |||| | || |||||||||||||||| ||||||| ||| ||  ||||||||||||||    
T  14839176 taatgtaatgcagccgcggtgttttggtactgcacctgctacgtagcggagttttttcctcccta 14839240  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 220 - 317
Target Start/End: Original strand, 43228108 - 43228205
Alignment:
Q  220 tgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagccgtgttttggtactgcagctgctacatagtggcattttttcctccct 317  Q
    |||||||||||||||||| |||| |||||||||||||||||||||| |||| ||||||| | ||||||||| |||| | ||||| |||||||||||||    
T  43228108 tgcataatttagagttggctttcggcatgtggactaatgtagtgcagcagcagtgtttttgcactgcagcttctacctggtggcgttttttcctccct 43228205  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 43227984 - 43228089
Alignment:
Q  132 ccaagatatatgcttatggaat--gcgtttctttattttcatatccaaatgt--gtgcttaactattcagagctggttcaaggtaattttcttgcataat 227  Q
    |||| |||||||||||||||||  | ||||||||||||||||||||| ||||  |||||||||||||||||| |||||||||||||||||| ||||||||    
T  43227984 ccaaaatatatgcttatggaatatgtgtttctttattttcatatccagatgtttgtgcttaactattcagagttggttcaaggtaattttc-tgcataat 43228082  T
Q  228 ttagagt 234  Q
    || ||||    
T  43228083 ttggagt 43228089  T

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Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 156 - 318
Target Start/End: Complemental strand, 27962613 - 27962450
Alignment:
Q  156 gtttctttattttcatatccaaatgt--gtgcttaactattcagagctggttcaaggtaattttcttgcataatttagagttggttttctgcatgtggac 253  Q
    |||||||||||||||||| || ||||  |||||||||||||||||||||||||||||||||||||   |||| ||||||| |||||||| |||| |||||    
T  27962613 gtttctttattttcatattcagatgtttgtgcttaactattcagagctggttcaaggtaattttcga-catagtttagagctggttttcagcatatggac 27962515  T
Q  254 taatgtagtgcaacagccgtgttttggtactgcagctgctacatagtggcattttttcctcccta 318  Q
    ||||||| |||| | || |||||||||||||||| ||||||| ||| ||  ||||||||||||||    
T  27962514 taatgtaatgcagccgcggtgttttggtactgcacctgctacgtagcggagttttttcctcccta 27962450  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 220 - 320
Target Start/End: Original strand, 24455872 - 24455972
Alignment:
Q  220 tgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagccgtgttttggtactgcagctgctacatagtggcattttttcctccctat 319  Q
    |||||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||||||| |||||||||||| |||||| ||||||||||||||||    
T  24455872 tgcataatttagagctggttttcggcatgtggactaatgtaatgcaacagcagtgttttggtattgcagctgctacgtagtggtattttttcctccctat 24455971  T
Q  320 g 320  Q
    |    
T  24455972 g 24455972  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 132 - 229
Target Start/End: Original strand, 24455752 - 24455848
Alignment:
Q  132 ccaagatatatgcttatggaatgcgtttctttattttcatatccaaatgtgtgcttaactattcagagctggttcaaggtaattttcttgcataattt 229  Q
    |||| ||||||||||||| |||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24455752 ccaaaatatatgcttatgaaatgtgtttctttattttcatatacagatgtgtgcttaactattcagagctggttcaaggtaattttc-tgcataattt 24455848  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 220 - 316
Target Start/End: Complemental strand, 1615221 - 1615125
Alignment:
Q  220 tgcataatttagagttggttttctgcatgtggactaatgtagtgcaacagccgtgttttggtactgcagctgctacatagtggcattttttcctccc 316  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||| |||| ||||||||||| |||||||||||  ||||||||||||||| ||||    
T  1615221 tgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcattttttcttccc 1615125  T

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