View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_high_42 (Length: 307)
Name: NF1084_high_42
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_high_42 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 40 - 242
Target Start/End: Original strand, 17325835 - 17326037
Alignment:
| Q |
40 |
ctgagctgagctgaagacctgttctgaatgctaggataaaatctcttgaccaaccaaaattttttataatacctggattaaggttgcaagcattgaacca |
139 |
Q |
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| T |
17325835 |
ctgagctgagctgaagacctgttctgaatgctaagataaaatctcttgaccaaccaaaaaattttataatacctggattaaggttgcaagcattgaacca |
17325934 |
T |
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| Q |
140 |
accaaattaaaccagagacaagtctgagtaaaatcaaacctgtattataattgatgaatggtgtacaaaccaaccgccaacacacatagattcaagagct |
239 |
Q |
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| T |
17325935 |
accaaattaaaccagagacaagtctgagtaaaatcaaacttgtactataactgatgaatggtgtacaaaccaaccgccaacacacatagattcaagaact |
17326034 |
T |
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| Q |
240 |
aac |
242 |
Q |
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| T |
17326035 |
aac |
17326037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 17379978 - 17380051
Alignment:
| Q |
124 |
tgcaagcattgaaccaaccaaattaaaccagagacaagtctgagtaaaatcaaacctgtattataattgatgaa |
197 |
Q |
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| T |
17379978 |
tgcaagcattgaacaaaccaaaataaaccagagacaagtctgagaaaaatcaaacttgtattttaactgatgaa |
17380051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 17356187 - 17356260
Alignment:
| Q |
124 |
tgcaagcattgaaccaaccaaattaaaccagagacaagtctgagtaaaatcaaacctgtattataattgatgaa |
197 |
Q |
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| T |
17356187 |
tgcaagcattgaacaaaccaaaataaactagagacaagtctgagaaaaataaaacttgtattttaactgatgaa |
17356260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 1347301 - 1347373
Alignment:
| Q |
150 |
accagagacaagtctgagtaaaatcaaacctgtattataattgatgaatggtgtacaaaccaaccgccaacac |
222 |
Q |
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| T |
1347301 |
accagagacaagtttgagtaacatcaaacttatcttttaaacgaagaatggtgtacgaaccaaccaccaacac |
1347373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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