View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1084_high_44 (Length: 295)

Name: NF1084_high_44
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1084_high_44
NF1084_high_44
[»] chr5 (35 HSPs)
chr5 (70-290)||(38433992-38434212)
chr5 (70-288)||(12680631-12680849)
chr5 (76-288)||(2226445-2226657)
chr5 (76-288)||(36103173-36103385)
chr5 (76-288)||(12165505-12165717)
chr5 (76-288)||(9161291-9161501)
chr5 (89-288)||(332856-333057)
chr5 (76-288)||(32520787-32520994)
chr5 (77-241)||(36176452-36176616)
chr5 (76-288)||(10174371-10174575)
chr5 (76-288)||(30265360-30265566)
chr5 (77-214)||(36176683-36176820)
chr5 (178-281)||(35893302-35893405)
chr5 (152-290)||(17084513-17084651)
chr5 (201-288)||(23781037-23781124)
chr5 (201-288)||(23867990-23868077)
chr5 (76-174)||(666894-666992)
chr5 (76-174)||(15068825-15068923)
chr5 (76-174)||(27885709-27885807)
chr5 (13-74)||(8939571-8939632)
chr5 (70-174)||(11917804-11917908)
chr5 (76-174)||(701566-701664)
chr5 (76-174)||(8409335-8409433)
chr5 (76-174)||(38334377-38334475)
chr5 (76-156)||(42545822-42545902)
chr5 (76-174)||(30002347-30002445)
chr5 (224-290)||(38334674-38334740)
chr5 (110-169)||(691167-691226)
chr5 (86-183)||(23781125-23781215)
chr5 (86-183)||(23868078-23868168)
chr5 (166-288)||(42544964-42545086)
chr5 (147-290)||(9988538-9988665)
chr5 (115-169)||(18432556-18432610)
chr5 (141-171)||(27571668-27571698)
chr5 (85-169)||(23623469-23623553)
[»] chr4 (24 HSPs)
chr4 (80-284)||(48996392-48996596)
chr4 (76-288)||(40899646-40899858)
chr4 (86-288)||(32137001-32137203)
chr4 (76-288)||(30193542-30193754)
chr4 (86-288)||(6333625-6333832)
chr4 (87-288)||(8176185-8176376)
chr4 (85-288)||(40806396-40806591)
chr4 (85-288)||(10218992-10219185)
chr4 (122-288)||(23937130-23937296)
chr4 (88-274)||(52345031-52345216)
chr4 (152-290)||(31301706-31301845)
chr4 (76-190)||(26477755-26477869)
chr4 (76-174)||(29639994-29640092)
chr4 (76-174)||(50570584-50570682)
chr4 (76-175)||(5261417-5261516)
chr4 (76-174)||(42558082-42558180)
chr4 (134-214)||(43630916-43630996)
chr4 (224-290)||(29639762-29639828)
chr4 (76-174)||(29643333-29643431)
chr4 (76-174)||(36078683-36078781)
chr4 (85-232)||(52345216-52345353)
chr4 (239-288)||(43630860-43630909)
chr4 (145-174)||(51395253-51395282)
chr4 (141-169)||(41325862-41325890)
[»] chr3 (19 HSPs)
chr3 (76-288)||(6003955-6004167)
chr3 (76-288)||(21586414-21586620)
chr3 (88-288)||(35531736-35531931)
chr3 (85-288)||(32880615-32880813)
chr3 (156-288)||(50562223-50562355)
chr3 (70-209)||(48032697-48032836)
chr3 (145-288)||(33002826-33002969)
chr3 (76-174)||(10369610-10369708)
chr3 (85-288)||(43030735-43030919)
chr3 (157-288)||(39098247-39098378)
chr3 (76-174)||(35401796-35401894)
chr3 (85-174)||(34794923-34795012)
chr3 (76-174)||(51149294-51149392)
chr3 (217-288)||(27641871-27641942)
chr3 (76-174)||(4669219-4669317)
chr3 (76-174)||(33361312-33361410)
chr3 (76-160)||(27641784-27641868)
chr3 (117-165)||(10481178-10481226)
chr3 (120-191)||(55130150-55130221)
[»] scaffold0013 (2 HSPs)
scaffold0013 (76-288)||(106344-106556)
scaffold0013 (147-288)||(128951-129092)
[»] scaffold0059 (2 HSPs)
scaffold0059 (70-288)||(69091-69309)
scaffold0059 (70-272)||(77197-77399)
[»] chr6 (10 HSPs)
chr6 (76-288)||(35039500-35039712)
chr6 (90-288)||(33550632-33550830)
chr6 (85-288)||(10591147-10591350)
chr6 (76-288)||(13801544-13801751)
chr6 (76-288)||(25137453-25137664)
chr6 (85-288)||(15860037-15860239)
chr6 (87-288)||(10390613-10390800)
chr6 (76-174)||(12270905-12271003)
chr6 (76-174)||(5866644-5866742)
chr6 (80-202)||(10493957-10494079)
[»] chr1 (21 HSPs)
chr1 (76-288)||(33910338-33910550)
chr1 (76-288)||(39256197-39256409)
chr1 (77-288)||(16529054-16529265)
chr1 (76-288)||(24910615-24910827)
chr1 (85-288)||(33474750-33474953)
chr1 (76-288)||(45692105-45692312)
chr1 (76-288)||(51251992-51252194)
chr1 (115-269)||(11899367-11899521)
chr1 (85-284)||(32954392-32954586)
chr1 (157-288)||(44918850-44918981)
chr1 (70-288)||(1160589-1160791)
chr1 (72-227)||(6722380-6722529)
chr1 (217-288)||(29389341-29389412)
chr1 (85-174)||(8211639-8211728)
chr1 (85-174)||(20494094-20494183)
chr1 (85-174)||(5154968-5155057)
chr1 (85-143)||(29390133-29390191)
chr1 (76-174)||(29707708-29707801)
chr1 (76-138)||(44918985-44919047)
chr1 (115-169)||(45949097-45949151)
chr1 (141-169)||(12974036-12974064)
[»] chr2 (15 HSPs)
chr2 (76-288)||(25297818-25298030)
chr2 (76-288)||(44979337-44979549)
chr2 (87-282)||(18360115-18360310)
chr2 (85-288)||(44035618-44035821)
chr2 (76-288)||(11376195-11376402)
chr2 (110-288)||(17916454-17916634)
chr2 (76-288)||(19936687-19936894)
chr2 (110-277)||(34910629-34910791)
chr2 (76-174)||(9811739-9811837)
chr2 (85-175)||(42785101-42785191)
chr2 (76-174)||(20420777-20420875)
chr2 (76-174)||(36412923-36413021)
chr2 (224-290)||(20420506-20420572)
chr2 (76-161)||(16579002-16579087)
chr2 (99-169)||(44085956-44086026)
[»] chr8 (16 HSPs)
chr8 (70-288)||(30392388-30392606)
chr8 (76-288)||(14549537-14549744)
chr8 (78-288)||(36827356-36827566)
chr8 (70-290)||(33068899-33069114)
chr8 (85-287)||(3682228-3682425)
chr8 (76-212)||(44673109-44673245)
chr8 (86-284)||(10661461-10661658)
chr8 (85-288)||(18169602-18169800)
chr8 (85-288)||(18633168-18633366)
chr8 (76-253)||(6200498-6200675)
chr8 (76-288)||(36909910-36910106)
chr8 (86-160)||(5802528-5802602)
chr8 (76-160)||(42496462-42496546)
chr8 (76-165)||(3006199-3006283)
chr8 (122-165)||(19539686-19539729)
chr8 (141-169)||(1271600-1271628)
[»] chr7 (29 HSPs)
chr7 (76-288)||(43429477-43429689)
chr7 (76-288)||(42910243-42910450)
chr7 (76-288)||(31876208-31876415)
chr7 (76-288)||(13852617-13852827)
chr7 (70-287)||(32823906-32824113)
chr7 (70-285)||(24360851-24361064)
chr7 (75-260)||(18672781-18672966)
chr7 (76-288)||(36921118-36921327)
chr7 (76-269)||(27054290-27054483)
chr7 (152-288)||(22366759-22366895)
chr7 (76-290)||(10069870-10070074)
chr7 (76-281)||(31982233-31982428)
chr7 (86-277)||(5932944-5933129)
chr7 (141-288)||(48675421-48675568)
chr7 (76-174)||(3211768-3211866)
chr7 (76-174)||(47070027-47070125)
chr7 (86-174)||(47204093-47204181)
chr7 (76-175)||(47903641-47903740)
chr7 (76-174)||(10672178-10672276)
chr7 (76-174)||(12117959-12118057)
chr7 (76-160)||(8768292-8768376)
chr7 (76-155)||(11206004-11206083)
chr7 (157-215)||(36509028-36509086)
chr7 (195-285)||(47903546-47903636)
chr7 (76-169)||(40849325-40849418)
chr7 (110-169)||(524425-524484)
chr7 (87-133)||(36509096-36509142)
chr7 (141-169)||(29628680-29628708)
chr7 (141-169)||(30079179-30079207)
[»] scaffold0029 (2 HSPs)
scaffold0029 (76-288)||(40136-40348)
scaffold0029 (76-288)||(47332-47544)
[»] scaffold0308 (1 HSPs)
scaffold0308 (87-174)||(5490-5577)


Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 70 - 290
Target Start/End: Complemental strand, 38434212 - 38433992
Alignment:
Q  70 ggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaa 169  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38434212 ggtttagatgaatttggatgacttttgcactgaaccgtgaggttcggtttgatttgcggtttgtatctcagcaaccgaaccaaaccaaaccaaaccgcaa 38434113  T
Q  170 gaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgat 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38434112 gaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgcaccatcacgttcgat 38434013  T
Q  270 tctaattcctttccatctcct 290  Q
    |||||||| ||| ||||||||    
T  38434012 tctaattctttttcatctcct 38433992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 70 - 288
Target Start/End: Original strand, 12680631 - 12680849
Alignment:
Q  70 ggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaa 169  Q
    |||| ||||||||| |||||||||||||| ||||||||| |||| |||||| ||||||||||| |||||| |||||||||||||||||||||||||||||    
T  12680631 ggttcagatgaattcggatgacttttgcaatgaaccgcgcggtttggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaa 12680730  T
Q  170 gaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgat 269  Q
    |||| |  |||||||||||||| |||||||||||||||||||| | ||| ||||||||||||| |||||||||||||||||||| ||||||| |||||||    
T  12680731 gaatgatgaatattacttaaacatgtactagcccaattacataacttaaaaataatctcttttgattcgatttttccattgttgcaccatcaggttcgat 12680830  T
Q  270 tctaattcctttccatctc 288  Q
    |||||||||||||||||||    
T  12680831 tctaattcctttccatctc 12680849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 76 - 288
Target Start/End: Original strand, 2226445 - 2226657
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| |||||||||||||||| ||||||| ||||| ||| | ||||||||||| |||||| ||||||||||||||||||||||||||| |||||||    
T  2226445 gatgaattcggatgacttttgcacttaaccgcgcggttcagttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgccagaataa 2226544  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      |||||||||||||| |||| |||||||||||||||||  | |||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||    
T  2226545 tgaatattacttaaacatgtattagcccaattacatagctcatgaataatctcttttgattcgatttttccattgttgcaccatcaggttcgattctaat 2226644  T
Q  276 tcctttccatctc 288  Q
    |||||||||||||    
T  2226645 tcctttccatctc 2226657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 76 - 288
Target Start/End: Original strand, 36103173 - 36103385
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    ||||||||  ||||||||||||||||||||||| |||||| |||| ||||  ||||| |||||| |||||||||||||||||||||||||||||||||||    
T  36103173 gatgaattcagatgacttttgcactgaaccgcgcggttcgttttggtttgtagtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataa 36103272  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      |||||||||| ||| ||||||||||||| ||||||||  ||||||||||  |||| |||||||||||||||||||| ||||||| |||||||||||||    
T  36103273 tgaatattacttgaacatgtactagcccaactacatagctcaagaataatcgtttttgattcgatttttccattgttgcaccatcaagttcgattctaat 36103372  T
Q  276 tcctttccatctc 288  Q
    |||||||||||||    
T  36103373 tcctttccatctc 36103385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 76 - 288
Target Start/End: Original strand, 12165505 - 12165717
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| |||||||||||||||||||||||  ||||||||| | ||||| ||||| |||||| |||| ||||||||| ||||||||||||||||||||    
T  12165505 gatgaattcggatgacttttgcactgaaccgcatggttcggttcggtttgcagtttgcatctcagcaactgaaccaaacgaaaccaaaccgcaagaataa 12165604  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      |||||||||||||| ||||||||||||||||||||||  |||||||||||||||  ||||||| |||||||||||| ||||||| |||| ||| ||||    
T  12165605 tgaatattacttaaacatgtactagcccaattacatagctcaagaataatctctttcgattcgatctttccattgttgcaccatcaggttcaattttaat 12165704  T
Q  276 tcctttccatctc 288  Q
    |||||| ||||||    
T  12165705 tccttttcatctc 12165717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 76 - 288
Target Start/End: Complemental strand, 9161501 - 9161291
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    ||||||||  ||||||||||||||||||||| | ||||||||| | ||||||||||| |||||| |||||||||||||||||||| ||||||||||||||    
T  9161501 gatgaattcagatgacttttgcactgaaccgtgcggttcggttcggtttgcggtttgaatctcagcaaccgaaccaaaccaaacccaaccgcaagaataa 9161402  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      |||||||||||||  || ||||||||||  |||||||  |  ||||||||||||| |||||||||||||||||||| ||||||| |||| ||||||||    
T  9161401 tgaatattacttaaatatgcactagcccaa--acatagctcagaaataatctcttttgattcgatttttccattgttgcaccatcaagttcaattctaat 9161304  T
Q  276 tcctttccatctc 288  Q
    |||||||||||||    
T  9161303 tcctttccatctc 9161291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 89 - 288
Target Start/End: Original strand, 332856 - 333057
Alignment:
Q  89 gacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattactta 188  Q
    ||||||||||||||||||||  |||||||||| ||||||||||| |||||| || |||||||||||||||| |||||||||||||||  |||||||||||    
T  332856 gacttttgcactgaaccgcgcagttcggtttggtttgcggtttgcatctcagcatccgaaccaaaccaaactaaaccgcaagaataatgaatattactta 332955  T
Q  189 aacttgtactagcccaattac--atagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatc 286  Q
    ||| |||||| ||||||||||  |||||  ||||||||||| |||| |||||||||||||||  ||| ||||||| |||||||||||||||||||| |||    
T  332956 aacatgtactggcccaattacatatagctcaagaataatctattttgattcgatttttccataattgcaccatcaagttcgattctaattcctttctatc 333055  T
Q  287 tc 288  Q
    ||    
T  333056 tc 333057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 76 - 288
Target Start/End: Original strand, 32520787 - 32520994
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| |||||||||||||| ||||||||| ||||||||||| |||||| | || |||||| ||||||||||     |||||||||||||||||| |    
T  32520787 gatgaattcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcgatctgcatctcagcaaccgaacc-----aaaccaaaccgcaagaatga 32520881  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      |||||||||||||  ||||||||||||||||||||   ||||||||||||||||| ||||||||||| |||||||| ||||||| ||||||||||| |    
T  32520882 tgaatattacttaaagatgtactagcccaattacataatttaagaataatctcttttgattcgattttttcattgttgcaccatcaggttcgattctagt 32520981  T
Q  276 tcctttccatctc 288  Q
    || ||||||||||    
T  32520982 tcatttccatctc 32520994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 77 - 241
Target Start/End: Original strand, 36176452 - 36176616
Alignment:
Q  77 atgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataag 176  Q
    ||||||| |||||||||||||||| ||||||  ||||||| ||| ||||||||||| |||||| ||||||||||||| |||||||||||||||||||||     
T  36176452 atgaattcggatgacttttgcactaaaccgcatggttcgggttggtttgcggtttgcatctcagcaaccgaaccaaatcaaaccaaaccgcaagaataat 36176551  T
Q  177 aaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatt 241  Q
     | |||||||||||| ||||||||||||||||||||||  ||||| |||||||||| ||||||||    
T  36176552 gactattacttaaacgtgtactagcccaattacatagctcaagaaaaatctcttttgattcgatt 36176616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 76 - 288
Target Start/End: Complemental strand, 10174575 - 10174371
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| |||||||||||||||||||||||| |||| | || ||||||||||||| |||||| |||||||||||||||||||||||||||||    ||    
T  10174575 gatgaattcggatgacttttgcactgaaccgcgcggtttg-ttcgatttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaa----aa 10174481  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      |||||||||||||| ||||||| |||||||||||| |  |||   |||||||||| ||||||||||| |||||||| ||||||| |||||||| ||||    
T  10174480 tgaatattacttaaacatgtactatcccaattacataactcaag---aatctcttttgattcgattttttcattgttgcaccatcaggttcgattataat 10174384  T
Q  276 tcctttccatctc 288  Q
    || ||| ||||||    
T  10174383 tcattttcatctc 10174371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 76 - 288
Target Start/End: Original strand, 30265360 - 30265566
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    ||||||||  ||||||||||||||| ||||     || ||||| | ||||||||||| |||||| ||||||||||||| ||||||||| |||||||||||    
T  30265360 gatgaattcagatgacttttgcactaaacc-----gtacggttcggtttgcggtttgcatctcagcaaccgaaccaaatcaaaccaaatcgcaagaataa 30265454  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      |||||||||||| | ||| ||||||||||||||||||  || ||||| | |||| ||||||||||||||||||||| ||||||| |||||||||||||    
T  30265455 tgaatattacttaatcatgtgctagcccaattacatagctcaaaaataa-cgctttcaattcgatttttccattgttgcaccatcaagttcgattctaat 30265553  T
Q  276 tcctttccatctc 288  Q
    |  ||||||||||    
T  30265554 tattttccatctc 30265566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 77 - 214
Target Start/End: Original strand, 36176683 - 36176820
Alignment:
Q  77 atgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataag 176  Q
    ||||||| |||||||||||||||| ||||||  ||||||| ||| ||||||||||| |||||| ||||||||||||| |||||||||||||||||||||     
T  36176683 atgaattcggatgacttttgcactaaaccgcatggttcgggttggtttgcggtttgcatctcagcaaccgaaccaaatcaaaccaaaccgcaagaataat 36176782  T
Q  177 aaatattacttaaacttgtactagcccaattacatagc 214  Q
     | |||||||||||| ||||||||||||||||||||||    
T  36176783 gactattacttaaacgtgtactagcccaattacatagc 36176820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 178 - 281
Target Start/End: Complemental strand, 35893405 - 35893302
Alignment:
Q  178 aatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattc 277  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||  ||| ||||||| |||||||| ||||||||| |||||||||||||    
T  35893405 aatattacttaaacatgtactagcccaattacatagctcaagaataatctctttcgatttgattttttcattgttgcaccatcacgctcgattctaattc 35893306  T
Q  278 cttt 281  Q
    ||||    
T  35893305 cttt 35893302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 152 - 290
Target Start/End: Original strand, 17084513 - 17084651
Alignment:
Q  152 aaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgt 251  Q
    |||| |||||||||||||||||||  |||||||||||||||||||||| ||||||||||||  | || |||||||| |||| |||||||||||||||| |    
T  17084513 aaccgaaccaaaccgcaagaataatcaatattacttaaacttgtactaacccaattacataatccaaaaataatctattttgattcgatttttccattat 17084612  T
Q  252 tgtaccatcacgttcgattctaattcctttccatctcct 290  Q
    || ||||||| |||||| |||| ||  ||| ||||||||    
T  17084613 tgcaccatcaagttcgaatctatttgtttttcatctcct 17084651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 288
Target Start/End: Complemental strand, 23781124 - 23781037
Alignment:
Q  201 cccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctc 288  Q
    ||||||||| ||||  |||||||||||||||| ||| |||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  23781124 cccaattacttagctcaagaataatctcttttgatttgatttttccattgttgtaccatcgggttcgattctaattcctttccatctc 23781037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 288
Target Start/End: Complemental strand, 23868077 - 23867990
Alignment:
Q  201 cccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctc 288  Q
    ||||||||| ||||  |||||||||||||||| ||| |||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  23868077 cccaattacttagctcaagaataatctcttttgatttgatttttccattgttgtaccatcgggttcgattctaattcctttccatctc 23867990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 666894 - 666992
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| || |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  666894 gatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 666992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 15068923 - 15068825
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| || |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||||||||| ||||||||||||||||||||||| ||||    
T  15068923 gatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcaacaaccaaaccaaaccaaaccaaaccgcaaaaata 15068825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 27885709 - 27885807
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| || |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  27885709 gatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 27885807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 8939632 - 8939571
Alignment:
Q  13 aatatgtataatgaggtaaaaatgacaatacttgcgtttgattaccgtattttgcagggttt 74  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8939632 aatatgtataatgaggtaaaaatgacaatacttgcttttgattaccgtattttgcagggttt 8939571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 70 - 174
Target Start/End: Complemental strand, 11917908 - 11917804
Alignment:
Q  70 ggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaa 169  Q
    ||||| ||||| || |||||||||||  ||| ||||||| ||||||||| | ||||||||||| |||||| |||||||||||||||||||||||||||||    
T  11917908 ggtttggatgagttcggatgacttttagactaaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaa 11917809  T
Q  170 gaata 174  Q
     ||||    
T  11917808 aaata 11917804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 701664 - 701566
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| ||||||||||||||  ||| ||||||  ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  701664 gatgagtttggatgacttttagactaaaccgcacggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 701566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 8409433 - 8409335
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| || |||||||||||  |||||| |||| ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  8409433 gatgagttcggatgacttttagactgaatcgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 8409335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 38334377 - 38334475
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| || |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| |||||||||||||| |||||||||||||| ||||    
T  38334377 gatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaactaaaccaaaccgcaaaaata 38334475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 42545902 - 42545822
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaacca 156  Q
    ||||||||  ||||||||||||||| ||||||| ||||||||| | ||||||||||| |||||||||||||||||||||||    
T  42545902 gatgaattcagatgacttttgcactaaaccgcgcggttcggttcggtttgcggtttgcatctcaacaaccgaaccaaacca 42545822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 30002445 - 30002347
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| || |||||| ||||  ||||||||||| ||||||||| | ||||||||||  |||||| ||||||||||||||||||||||||||||| ||||    
T  30002445 gatgagttcggatgatttttagactgaaccgcgcggttcggttcggtttgcggtttacatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 30002347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 38334674 - 38334740
Alignment:
Q  224 atctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctcct 290  Q
    ||||| |||||||||||||| ||||||||| | ||||| ||||||||||||||||||||||||||||    
T  38334674 atctcctttaattcgattttcccattgttgcatcatcaggttcgattctaattcctttccatctcct 38334740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 691167 - 691226
Alignment:
Q  110 ggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaa 169  Q
    |||| |||||||||||||||||  || | | |||||||||||||||||||||||||||||    
T  691167 ggtttggtttgatttgcggttttcattttaccaaccgaaccaaaccaaaccaaaccgcaa 691226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 183
Target Start/End: Complemental strand, 23781215 - 23781125
Alignment:
Q  86 gatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatatt 183  Q
    ||||||||||||||||||| ||| |||||||||       ||||||| |||||| |||| ||||||| |||||||||||||||| |||||  ||||||    
T  23781215 gatgacttttgcactgaactgcgcggttcggtt-------cggtttgcatctcagcaactgaaccaagccaaaccaaaccgcaaaaataatgaatatt 23781125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 183
Target Start/End: Complemental strand, 23868168 - 23868078
Alignment:
Q  86 gatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatatt 183  Q
    ||||||||||||||||||| ||| |||||||||       ||||||| |||||| |||| ||||||| |||||||||||||||| |||||  ||||||    
T  23868168 gatgacttttgcactgaactgcgcggttcggtt-------cggtttgcatctcagcaactgaaccaagccaaaccaaaccgcaaaaataatgaatatt 23868078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 288
Target Start/End: Complemental strand, 42545086 - 42544964
Alignment:
Q  166 gcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgtt 265  Q
    ||||||||||  |||||||||||||  |||| ||||||||| |||||||  |||||||||||  ||| |||| | || | |||||||| ||||| | | |    
T  42545086 gcaagaataatgaatattacttaaatatgtaatagcccaataacatagctcaagaataatctaatttgattcaacttgttcattgttgcaccataaggct 42544987  T
Q  266 cgattctaattcctttccatctc 288  Q
     |||| |||||| ||||||||||    
T  42544986 tgattttaattcttttccatctc 42544964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 290
Target Start/End: Original strand, 9988538 - 9988665
Alignment:
Q  147 aaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttcc 246  Q
    ||||||||||||||||||||||| ||| |   |||||| ||||||||||||||||||             ||||| |||||||||| |||| |||||| |    
T  9988538 aaccaaaccaaaccaaaccgcaataatca---atattatttaaacttgtactagccc-------------aagaacaatctcttttgattcaattttttc 9988621  T
Q  247 attgttgtaccatcacgttcgattctaattcctttccatctcct 290  Q
    ||| ||| |||||||  ||||||| |||||||||| ||||||||    
T  9988622 attcttgcaccatcagattcgattttaattccttttcatctcct 9988665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 18432610 - 18432556
Alignment:
Q  115 ggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaa 169  Q
    |||||| |||||||||| ||| | | ||||||||||||| |||||||||||||||    
T  18432610 ggtttggtttgcggtttttattttatcaaccgaaccaaatcaaaccaaaccgcaa 18432556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 171
Target Start/End: Original strand, 27571668 - 27571698
Alignment:
Q  141 caaccgaaccaaaccaaaccaaaccgcaaga 171  Q
    |||||||||||||||||||||||||||||||    
T  27571668 caaccgaaccaaaccaaaccaaaccgcaaga 27571698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 23623553 - 23623469
Alignment:
Q  85 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaa 169  Q
    |||| ||||||  ||| ||||||  |||| |||||| ||||||||||  || | |  ||||||||||||||||||||||||||||    
T  23623553 ggatcacttttttactcaaccgcatggtttggtttggtttgcggttttcatttgacaaaccgaaccaaaccaaaccaaaccgcaa 23623469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 80 - 284
Target Start/End: Complemental strand, 48996596 - 48996392
Alignment:
Q  80 aatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaa 179  Q
    |||| |||||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||  ||    
T  48996596 aattcggatgacttttgcaatgaaccgcgcggttcggtttgatttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataatgaa 48996497  T
Q  180 tattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcct 279  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||  ||||||||||||||||    
T  48996496 tattacttaaacatgtactagcctaattacatagcctaagaataatctcttttgattcgattttttcattgttgcaccatcaaattcgattctaattcct 48996397  T
Q  280 ttcca 284  Q
    |||||    
T  48996396 ttcca 48996392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 76 - 288
Target Start/End: Original strand, 40899646 - 40899858
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| ||||||||||||| |||||||||| |||| |||| | ||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  40899646 gatgaattcggatgacttttgcgctgaaccgcgcggtttggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataa 40899745  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      ||| |||||||||| |||| |||||||||||||||||| ||| |||||||||||| |||||||||||||||||||| |||||||  ||| ||||||||    
T  40899746 tgaatgttacttaaacatgtaatagcccaattacatagcccaaggataatctcttttgattcgatttttccattgttgcaccatcaaattcaattctaat 40899845  T
Q  276 tcctttccatctc 288  Q
    |||||||||||||    
T  40899846 tcctttccatctc 40899858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 86 - 288
Target Start/End: Complemental strand, 32137203 - 32137001
Alignment:
Q  86 gatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattac 185  Q
    ||||||||||||| ||||||| | ||||||||||| ||||||||||| |||||| ||||||||||||| ||||||||||| ||||||| |  ||||||||    
T  32137203 gatgacttttgcaatgaaccgtgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaatcaaaccaaaccacaagaatgatgaatattac 32137104  T
Q  186 ttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccat 285  Q
    |||||| |||||||||||||||||||||| |||||||||| |||||| ||||||||||| |||||||| ||||||| |||||||| ||||||||||||||    
T  32137103 ttaaacatgtactagcccaattacatagcttaagaataatttctttttattcgattttttcattgttgcaccatcaggttcgattttaattcctttccat 32137004  T
Q  286 ctc 288  Q
    |||    
T  32137003 ctc 32137001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 76 - 288
Target Start/End: Original strand, 30193542 - 30193754
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| | |||||||||||| ||||||| | |||||||||   ||||| ||||| |||||| ||||||||||||||||||||| |||||||||||||    
T  30193542 gatgaattcgtatgacttttgcaatgaaccgtgcggttcggttcagtttgcagtttgcatctcagcaaccgaaccaaaccaaaccataccgcaagaataa 30193641  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      |||||||||||||  |||| || ||||||||||||||  ||||||||| |||||| |||||||||||||||||||| ||||||| |||||||| ||||    
T  30193642 tgaatattacttaaatatgtattatcccaattacatagctcaagaataatttcttttgattcgatttttccattgttgcaccatcaggttcgattttaat 30193741  T
Q  276 tcctttccatctc 288  Q
    |||||||||||||    
T  30193742 tcctttccatctc 30193754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 86 - 288
Target Start/End: Complemental strand, 6333832 - 6333625
Alignment:
Q  86 gatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaac-----cgcaagaataagaaat 180  Q
    |||||||||| |||||||||||| | ||||||| ||||||||| ||| |||| | ||||||||||||||||||||||||     |||||||||||  |||    
T  6333832 gatgacttttacactgaaccgcgcgattcggttcgatttgcggcttgcatcttagcaaccgaaccaaaccaaaccaaactaaaccgcaagaataatgaat 6333733  T
Q  181 attacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctt 280  Q
    ||||||||||  ||||||||||||||||||||||  |||||||||||||||| |||| |||||||||| |||| ||||||| ||||||||||||||| ||    
T  6333732 attacttaaatatgtactagcccaattacatagctcaagaataatctcttttgattcaatttttccatcgttgcaccatcaggttcgattctaattcatt 6333633  T
Q  281 tccatctc 288  Q
    ||||||||    
T  6333632 tccatctc 6333625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 87 - 288
Target Start/End: Original strand, 8176185 - 8176376
Alignment:
Q  87 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattact 186  Q
    ||||||||||||||||||||||  |||||||| ||||||||||||| |||||| |||||          ||||||||||||||||||||  || ||||||    
T  8176185 atgacttttgcactgaaccgcgtcgttcggttcgatttgcggtttgcatctcagcaacc----------aaaccaaaccgcaagaataatgaagattact 8176274  T
Q  187 taaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatc 286  Q
    ||||| ||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||| ||||||| ||||||| ||||||||||||||||    
T  8176275 taaacatgtactagcccaattacatagcccaaaaataatctcttttgattcgatttttccattgttgcaccatcaggttcgatcctaattcctttccatc 8176374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 85 - 288
Target Start/End: Original strand, 40806396 - 40806591
Alignment:
Q  85 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatatta 184  Q
    ||||||||||| |||||||||||      ||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||  |||||||    
T  40806396 ggatgacttttacactgaaccgca-----cggtttgatttgcggtttgcatctcagcaactgaaccaaaccaaaccaaaccgcaagaataatgaatatta 40806490  T
Q  185 cttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttcca 284  Q
    ||||||  ||||||||| ||||||||||||  |||||||||||||||| ||||||||||| ||||||||   || || ||||||||||||||||||||||    
T  40806491 cttaaatatgtactagctcaattacatagctcaagaataatctcttttgattcgattttttcattgttg---caacaggttcgattctaattcctttcca 40806587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 85 - 288
Target Start/End: Complemental strand, 10219185 - 10218992
Alignment:
Q  85 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatatta 184  Q
    ||||||||||| |||||||||||| ||||||||||| ||||||||||| |||||||  |||          ||||||||||||||||||||  |||||||    
T  10219185 ggatgacttttacactgaaccgcgcggttcggtttggtttgcggtttgcatctcaagtacc----------aaaccaaaccgcaagaataatgaatatta 10219096  T
Q  185 cttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttcca 284  Q
    ||||||| ||||||||||||||||||||||  |||||||||||| ||| ||| |||||||||||||||| ||||||  ||||||||||||||||||||||    
T  10219095 cttaaacatgtactagcccaattacatagctcaagaataatctcatttgattagatttttccattgttgcaccatctggttcgattctaattcctttcca 10218996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 122 - 288
Target Start/End: Original strand, 23937130 - 23937296
Alignment:
Q  122 tttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaa 221  Q
    |||| |||||| ||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||| | |||||| ||||||||||| |  |||||    
T  23937130 tttgtggtttgcatctcaacaactgaaccaaaccaaactaaaccgcaagaataataaatattacttaaacatatactagtccaattacataactcaagaa 23937229  T
Q  222 taatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctc 288  Q
    ||||||||||  ||| |||||||||||||||| ||||||| |||| |||||||||||||||||||||    
T  23937230 taatctctttagatttgatttttccattgttgcaccatcatgttctattctaattcctttccatctc 23937296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 88 - 274
Target Start/End: Complemental strand, 52345216 - 52345031
Alignment:
Q  88 tgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattactt 187  Q
    ||||||||||||||||||||  ||||||||| | ||||||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||    
T  52345216 tgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataatgaatattactt 52345117  T
Q  188 aaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaa 274  Q
    |||| |||||||| || ||| ||||||  ||||||| || ||||| ||| |||||||||||| ||| | ||||| ||||||||||||    
T  52345116 aaacatgtactagtccgattgcatagctcaagaatagtcgcttttgatttgatttttccattattgca-catcaggttcgattctaa 52345031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 152 - 290
Target Start/End: Complemental strand, 31301845 - 31301706
Alignment:
Q  152 aaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataa-tctcttttaattcgatttttccattg 250  Q
    |||| |||||||||||||||||||  ||||||||||||||||||| ||||||||||||||| |  |||||||| | | |||| |||||| |||| |||||    
T  31301845 aaccgaaccaaaccgcaagaataatcaatattacttaaacttgtattagcccaattacataactcaagaataattttttttttattcgactttttcattg 31301746  T
Q  251 ttgtaccatcacgttcgattctaattcctttccatctcct 290  Q
    ||| |||||||  |||||||||||||| ||||||||||||    
T  31301745 ttgcaccatcagtttcgattctaattcatttccatctcct 31301706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 76 - 190
Target Start/End: Original strand, 26477755 - 26477869
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| |||||||||||| ||| ||||| | ||||||||||| ||||||||||| |||||| |||||||||||||||||||||| || |||||||||    
T  26477755 gatgaattcggatgacttttgtactaaaccgtgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaatccacaagaataa 26477854  T
Q  176 gaaatattacttaaa 190  Q
      |||||||||||||    
T  26477855 tgaatattacttaaa 26477869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 29640092 - 29639994
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| || |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  29640092 gatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 29639994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 50570584 - 50570682
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| || |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  50570584 gatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 50570682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 175
Target Start/End: Original strand, 5261417 - 5261516
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    ||||||||  ||||||||||||||||||||||| ||||||||| | ||||||||||| ||||||  || ||||||||| |||||||||| ||||||||||    
T  5261417 gatgaattcagatgacttttgcactgaaccgcgcggttcggttcggtttgcggtttgcatctcagaaatcgaaccaaatcaaaccaaactgcaagaataa 5261516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 42558180 - 42558082
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| || |||||||||||  ||||||||| | ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  42558180 gatgagttcggatgacttttagactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 42558082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 214
Target Start/End: Complemental strand, 43630996 - 43630916
Alignment:
Q  134 atctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagc 214  Q
    |||||| |||||||||||||||||||||||||||||||||||  |||||||||||||  |||| |||||||| ||||||||    
T  43630996 atctcagcaaccgaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaaaatgtaatagcccaactacatagc 43630916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 29639828 - 29639762
Alignment:
Q  224 atctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctcct 290  Q
    ||||| |||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||    
T  29639828 atctcctttaattcgatttttccattgttgcatcatcaggttcgattctaattcctttccatctcct 29639762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 29643333 - 29643431
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| || |||||||||||  ||||||||||| ||||||||| | |||| || ||| |||||| ||||||||||||||||||||||||||||| ||||    
T  29643333 gatgagttcggatgacttttaaactgaaccgcgcggttcggttcggtttgtggcttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 29643431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 36078781 - 36078683
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| || |||||||||||  ||||||||||| |||||||||   ||||| ||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  36078781 gatgagttcggatgacttttagactgaaccgcgcggttcggttcagtttgcagtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 36078683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 232
Target Start/End: Complemental strand, 52345353 - 52345216
Alignment:
Q  85 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatatta 184  Q
    |||||||||||| |||||| |||  ||||||||| | |||| |||||| |||||| |||||||||||          ||||||||||||||  |||||||    
T  52345353 ggatgacttttgtactgaatcgcatggttcggttcggtttgtggtttgcatctcagcaaccgaacca----------aaccgcaagaataatgaatatta 52345264  T
Q  185 cttaaacttgtactagcccaattacatagcctaagaataatctctttt 232  Q
    ||||||| ||||||||||||||| ||||||  ||||||| || |||||    
T  52345263 cttaaacatgtactagcccaattgcatagctcaagaatagtcgctttt 52345216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 43630909 - 43630860
Alignment:
Q  239 atttttccattgttgtaccatcacgttcgattctaattcctttccatctc 288  Q
    |||||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  43630909 attttttcattgttgcaccattaagttcgattctaattcctttccatctc 43630860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 174
Target Start/End: Complemental strand, 51395282 - 51395253
Alignment:
Q  145 cgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||||||||||||||||||||||||||||    
T  51395282 cgaaccaaaccaaaccaaaccgcaagaata 51395253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 169
Target Start/End: Complemental strand, 41325890 - 41325862
Alignment:
Q  141 caaccgaaccaaaccaaaccaaaccgcaa 169  Q
    |||||||||||||||||||||||||||||    
T  41325890 caaccgaaccaaaccaaaccaaaccgcaa 41325862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 76 - 288
Target Start/End: Original strand, 6003955 - 6004167
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| ||||||||||||||||||||||||||||| |||| | ||||||||||| |||||| | |||||||||||||||||||||||||||||||||    
T  6003955 gatgaattcggatgacttttgcactgaaccgcgaggtttggttcggtttgcggtttgcatctcagctaccgaaccaaaccaaaccaaaccgcaagaataa 6004054  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      ||| |||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||| |||| ||||||||    
T  6004055 tgaatgttacttaaacatgtactagcccaattacatagcccaagaataatctcttttgattcgatttttccattgttgcaccatcaggttcaattctaat 6004154  T
Q  276 tcctttccatctc 288  Q
    |||||||||||||    
T  6004155 tcctttccatctc 6004167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 76 - 288
Target Start/End: Original strand, 21586414 - 21586620
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||     | ||||| |||||| ||||||||||||||||| ||||| |||||||||||    
T  21586414 gatgaatttggatgacttttgcactaaaccgcgcggttcggtttg-----cagtttgcatctcagcaaccgaaccaaaccaa-ccaaatcgcaagaataa 21586507  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      |||||||||||||| |||||||||| ||||||||||   ||||||||| |||||  |||||||||||||||||||| ||||| | |||||||||||||    
T  21586508 tgaatattacttaaacatgtactagccaaattacatagttcaagaataatatctttcgattcgatttttccattgttgcaccatgaggttcgattctaat 21586607  T
Q  276 tcctttccatctc 288  Q
    |||||||||||||    
T  21586608 tcctttccatctc 21586620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 88 - 288
Target Start/End: Original strand, 35531736 - 35531931
Alignment:
Q  88 tgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattactt 187  Q
    ||||||||||||||||||||  ||||| ||| ||||||| ||||| |||||| ||||||||||     ||||||||||||||||||||  ||||||||||    
T  35531736 tgacttttgcactgaaccgcacggttcagttcgatttgcagtttgcatctcagcaaccgaacc-----aaaccaaaccgcaagaataatgaatattactt 35531830  T
Q  188 aaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatct 287  Q
    |||| ||||||||||||||| ||||||  ||||||||||  |||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  35531831 aaacatgtactagcccaattgcatagctcaagaataatcgttttttattcgatttttccattgttgcaccatcatgttcgattctaattcctttccatct 35531930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 85 - 288
Target Start/End: Complemental strand, 32880813 - 32880615
Alignment:
Q  85 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatatta 184  Q
    ||||||||||||||||||||||||  |||||||||| ||| ||||||| |||||| ||||||||||||||||||||     ||||||| ||  |||||||    
T  32880813 ggatgacttttgcactgaaccgcgcagttcggtttggtttacggtttgcatctcagcaaccgaaccaaaccaaacc-----gcaagaaaaatgaatatta 32880719  T
Q  185 cttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttcca 284  Q
    ||||||| |||||||| |||||||||||||  |||  ||||||||||  ||| |||||||||||||||| ||||||| ||| ||||||||||||||||||    
T  32880718 cttaaacatgtactagtccaattacatagctcaagtttaatctctttcgatttgatttttccattgttgcaccatcaggtttgattctaattcctttcca 32880619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 156 - 288
Target Start/End: Original strand, 50562223 - 50562355
Alignment:
Q  156 aaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgta 255  Q
    |||||||||| |||||||||  |||||||||||||| ||||||||||||||||||||||  |||||||||||||||  |||||||||||||||||||| |    
T  50562223 aaaccaaaccccaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctctttcgattcgatttttccattgttgca 50562322  T
Q  256 ccatcacgttcgattctaattcctttccatctc 288  Q
    |||||| ||||||||||||||||||||||||||    
T  50562323 ccatcaggttcgattctaattcctttccatctc 50562355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 70 - 209
Target Start/End: Original strand, 48032697 - 48032836
Alignment:
Q  70 ggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaa 169  Q
    |||| ||||||||| |||||||||||||| ||||||||| ||||||||||| ||||||||||| |||||| || ||||||||||||||||||||||||||    
T  48032697 ggttcagatgaattcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcagcagccgaaccaaaccaaaccaaaccgcaa 48032796  T
Q  170 gaataagaaatattacttaaacttgtactagcccaattac 209  Q
    |||| |  |||||||||||||| |||||||||||||||||    
T  48032797 gaatcatgaatattacttaaacatgtactagcccaattac 48032836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 145 - 288
Target Start/End: Complemental strand, 33002969 - 33002826
Alignment:
Q  145 cgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgattttt 244  Q
    |||||||||| ||||||||||||||||||||  |||||| ||||||  ||||| || |||||||||||||  || ||||||||||||| |||||||||||    
T  33002969 cgaaccaaactaaaccaaaccgcaagaataatgaatatttcttaaatatgtaccagtccaattacatagctcaataataatctcttttgattcgattttt 33002870  T
Q  245 ccattgttgtaccatcacgttcgattctaattcctttccatctc 288  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||    
T  33002869 ccattgttgcaccatcaggttcgattctaactcctttccatctc 33002826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 10369708 - 10369610
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    |||||||| |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  10369708 gatgaattcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 10369610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 288
Target Start/End: Complemental strand, 43030919 - 43030735
Alignment:
Q  85 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaa-ccgcaagaataagaaatatt 183  Q
    |||||||||||||||| |||  || |||||||||||     ||||||| |||||| ||||||||||||||||||||||| ||||||||||||  ||||      
T  43030919 ggatgacttttgcacttaactacgcggttcggtttg-----cggtttgcatctcagcaaccgaaccaaaccaaaccaaaaccgcaagaataatgaata-- 43030827  T
Q  184 acttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttcc 283  Q
                 |||||| |||||||||||  ||||||||||| |||  |||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  43030826 -------------ctagccaaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaagttcgattctaattcctttcc 43030740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 157 - 288
Target Start/End: Complemental strand, 39098378 - 39098247
Alignment:
Q  157 aaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtac 256  Q
    |||| ||||||||||||||  |||||||||||||| ||||||| | |||||| |||||  ||||||||||| |||| | ||||||||| |||||||| ||    
T  39098378 aaccgaaccgcaagaataatgaatattacttaaacatgtactaacacaattaaatagctcaagaataatcttttttgaatcgattttttcattgttgcac 39098279  T
Q  257 catcacgttcgattctaattcctttccatctc 288  Q
    ||||| | | |||||||||| |||||||||||    
T  39098278 catcaggattgattctaatttctttccatctc 39098247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 35401796 - 35401894
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| || |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||| ||||||||||||||||||||||||| ||||    
T  35401796 gatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 35401894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 34795012 - 34794923
Alignment:
Q  85 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    |||||||||||  ||||||||| | ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  34795012 ggatgacttttagactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 34794923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 51149294 - 51149392
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| || |||||||||||  ||||||||||| ||||||||| | ||| ||||||| |||||| ||||| ||||||||||||||||||||||| ||||    
T  51149294 gatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttacggtttgcatctcagcaacctaaccaaaccaaaccaaaccgcaaaaata 51149392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 27641871 - 27641942
Alignment:
Q  217 aagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctc 288  Q
    |||||||||||||||| |||||||||||||||||| | ||||||| |||||| |||||||||| ||||||||    
T  27641871 aagaataatctcttttgattcgatttttccattgtagcaccatcaggttcgaatctaattcctctccatctc 27641942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 4669219 - 4669317
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| || |||||||||||  ||||||||||| ||||||||| | |||||| |||| |||||| ||||| ||||||||||||| ||||||||| ||||    
T  4669219 gatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcgatttgcatctcagcaaccaaaccaaaccaaactaaaccgcaaaaata 4669317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 33361410 - 33361312
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| || |||||||||||  ||||||||||| ||||  |||   ||||||||||| |||||| |||||||||| |||||||||||||||||| ||||    
T  33361410 gatgagttcggatgacttttagactgaaccgcgcggtttagttcagtttgcggtttgcatctcagcaaccgaaccgaaccaaaccaaaccgcaaaaata 33361312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 160
Target Start/End: Original strand, 27641784 - 27641868
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaacc 160  Q
    ||||||||  ||||||||||||||||||||||| |||| | |||| ||||||||||| |||||| | ||  ||||||||||||||    
T  27641784 gatgaattcagatgacttttgcactgaaccgcgtggtttgatttggtttgcggtttgcatctcagccactaaaccaaaccaaacc 27641868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 10481178 - 10481226
Alignment:
Q  117 tttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaacc 165  Q
    ||||||||||||||| ||| | | |||||||||||||||||||||||||    
T  10481178 tttgatttgcggtttttattttatcaaccgaaccaaaccaaaccaaacc 10481226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 55130221 - 55130150
Alignment:
Q  120 gatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaac 191  Q
    |||||||||||| ||||| ||||||||||||||  ||||| ||||||||| |  || |||||||| ||||||    
T  55130221 gatttgcggtttttatcttaacaaccgaaccaattcaaactaaaccgcaacataaaaaaatattaattaaac 55130150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 76 - 288
Target Start/End: Complemental strand, 106556 - 106344
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| |||||||||||||| ||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||||| ||||||||||||    
T  106556 gatgaattcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcaacaaccgaaccaaacccaaccaacccgcaagaataa 106457  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      |||||||||||||| |||||||||| ||||||||||||||| |||||| |||||| |||||||||||||||||||| |||||||  ||||||||||||    
T  106456 tgaatattacttaaacatgtactagcctaattacatagcctaataataatttctttttattcgatttttccattgttgcaccatcaaattcgattctaat 106357  T
Q  276 tcctttccatctc 288  Q
    |||||||||||||    
T  106356 tcctttccatctc 106344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 147 - 288
Target Start/End: Complemental strand, 129092 - 128951
Alignment:
Q  147 aaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttcc 246  Q
    |||||||||||||||| ||||||||||||  |||||||||||||| |||||||||| |||||||||||| || ||||||||||||  |||||||||||||    
T  129092 aaccaaaccaaaccaacccgcaagaataatgaatattacttaaacatgtactagcctaattacatagcccaataataatctctttatattcgatttttcc 128993  T
Q  247 attgttgtaccatcacgttcgattctaattcctttccatctc 288  Q
    ||||||| |||||||  |||||||||||||||||||||||||    
T  128992 attgttgcaccatcaaattcgattctaattcctttccatctc 128951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 70 - 288
Target Start/End: Original strand, 69091 - 69309
Alignment:
Q  70 ggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaa 169  Q
    ||||| |||||||| |||||||||||||| ||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||||| ||| ||||||    
T  69091 ggtttggatgaattcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaacaacccgcaa 69190  T
Q  170 gaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgat 269  Q
    ||||||  |||||||||||||| |||||||||| |||||||||||| || ||||||||||||| |||||||||||||||||||| |||||||  ||||||    
T  69191 gaataatgaatattacttaaacatgtactagcctaattacatagcccaataataatctcttttgattcgatttttccattgttgcaccatcaaattcgat 69290  T
Q  270 tctaattcctttccatctc 288  Q
    |||||||||||||||||||    
T  69291 tctaattcctttccatctc 69309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 70 - 272
Target Start/End: Original strand, 77197 - 77399
Alignment:
Q  70 ggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaa 169  Q
    ||||| |||||||| |||||||||||||| ||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||||| ||| ||||||    
T  77197 ggtttggatgaattcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaacaacccgcaa 77296  T
Q  170 gaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgat 269  Q
    ||||||  |||||||||||||| |||||||||| |||||||||||| || ||||||| ||||| |||||||||||||||||||| |||||||  ||||||    
T  77297 gaataatgaatattacttaaacatgtactagcctaattacatagcccaataataatcacttttgattcgatttttccattgttgcaccatcaaattcgat 77396  T
Q  270 tct 272  Q
    |||    
T  77397 tct 77399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 141; Significance: 6e-74; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 76 - 288
Target Start/End: Original strand, 35039500 - 35039712
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| ||||||||||||| |||||||||| |||| |||| | ||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  35039500 gatgaattcggatgacttttgcgctgaaccgcgcggtttggttcggtttgcggtttgcatctcaacaaccaaaccaaaccaaaccaaaccgcaagaataa 35039599  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      ||| |||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||  ||| ||||||||    
T  35039600 tgaatgttacttaaacatgtactagcccaattacatagcccaagaataatctcttttgattcgatttttccattgttgcaccatcaaattcaattctaat 35039699  T
Q  276 tcctttccatctc 288  Q
    |||||||||||||    
T  35039700 tcctttccatctc 35039712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 90 - 288
Target Start/End: Complemental strand, 33550830 - 33550632
Alignment:
Q  90 acttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaa 189  Q
    ||||||||||||||||||| |||| |||| | ||||||||||| |||||| |||||||||| ||||||||||||||||||||||||  ||||||||||||    
T  33550830 acttttgcactgaaccgcgcggtttggttcggtttgcggtttgcatctcagcaaccgaaccgaaccaaaccaaaccgcaagaataatgaatattacttaa 33550731  T
Q  190 acttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctc 288  Q
    || ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| |||||    
T  33550730 acatgtactagcccaattacatagcccaagaataatctcttttgattcgatttttccattgttgcaccatcaggttcgattctaattcctttcgatctc 33550632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 85 - 288
Target Start/End: Complemental strand, 10591350 - 10591147
Alignment:
Q  85 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatatta 184  Q
    |||||||||||||||||||||||| |||||| || | |||||||||||  |||||||||| ||||||||||||||  ||||||||||||||  |||||||    
T  10591350 ggatgacttttgcactgaaccgcgcggttcgattcggtttgcggtttgcgtctcaacaacagaaccaaaccaaactgaaccgcaagaataatgaatatta 10591251  T
Q  185 cttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttcca 284  Q
    ||||||| |||| |||||||||||||||||  ||||||||| |||||  ||||||||||| |||||||||||||||| ||||||||||||||| ||||||    
T  10591250 cttaaacatgtaatagcccaattacatagctcaagaataatgtctttcgattcgattttttcattgttgtaccatcaggttcgattctaattcatttcca 10591151  T
Q  285 tctc 288  Q
    ||||    
T  10591150 tctc 10591147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 76 - 288
Target Start/End: Original strand, 13801544 - 13801751
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| |||||||||||| | ||||||||  |||||||||||     ||||||| |||||| |||| ||||||||||||||||||||||||||||||    
T  13801544 gatgaattcggatgacttttgtattgaaccgcatggttcggtttg-----cggtttgcatctcatcaactgaaccaaaccaaaccaaaccgcaagaataa 13801638  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      |||||||||||||  ||||||||||||||||||||||  |||||||||||||||| |||| ||||||||||||||| ||||||| |||||||||||||    
T  13801639 tgaatattacttaaatatgtactagcccaattacatagctcaagaataatctcttttgattcaatttttccattgttgcaccatcaggttcgattctaat 13801738  T
Q  276 tcctttccatctc 288  Q
    |||||| ||||||    
T  13801739 tccttttcatctc 13801751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 76 - 288
Target Start/End: Complemental strand, 25137664 - 25137453
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| |||||||||||||||||||||||| |||| |||||| || ||||| || |||||| ||||||||||||||  ||||||||| ||| |||||    
T  25137664 gatgaattcggatgacttttgcactgaaccgcgcggtttggtttggtt-gcggtatgcatctcatcaaccgaaccaaactgaaccaaaccacaataataa 25137566  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      |||||||||||||| ||||||| ||||||||||||||| |||||||||||||||| ||||||||||| || | ||| ||||||| |||| ||||||||    
T  25137565 tgaatattacttaaacatgtactatcccaattacatagcccaagaataatctcttttgattcgattttttcaatattgcaccatcaggttcaattctaat 25137466  T
Q  276 tcctttccatctc 288  Q
    || ||||| ||||    
T  25137465 tcatttccttctc 25137453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 85 - 288
Target Start/End: Complemental strand, 15860239 - 15860037
Alignment:
Q  85 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatatta 184  Q
    ||||||||||| |||||||||| | |||||| |||| ||||| ||||| | |||| |||||||||||||||||||||||| ||||||||||  |||||||    
T  15860239 ggatgacttttacactgaaccgtgcggttcgatttggtttgcagtttgcacctcaccaaccgaaccaaaccaaaccaaactgcaagaataatgaatatta 15860140  T
Q  185 cttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttcca 284  Q
     |||||| ||||||||||||||||||||||  |||||||||||||||| ||| || ||||||||||||| |||||||  | |||||||||||| |||| |    
T  15860139 attaaacatgtactagcccaattacatagctcaagaataatctcttttgattaga-ttttccattgttgcaccatcagttccgattctaattcttttcta 15860041  T
Q  285 tctc 288  Q
    ||||    
T  15860040 tctc 15860037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 87 - 288
Target Start/End: Original strand, 10390613 - 10390800
Alignment:
Q  87 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattact 186  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||  |||| ||      
T  10390613 atgacttttgcactgaaccgcgcggttcggttcgatttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataatgaatagta-- 10390710  T
Q  187 taaacttgtactagcccaattacatagc-ctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccat 285  Q
                 ||| |||||| |||| | ||||||||||| |||  |||| ||||||||||||||| |||||||  ||||||| ||||||||||||||    
T  10390711 -------------gccaaattacgtagctcaaagaataatctttttcgattcaatttttccattgttgcaccatcagattcgattttaattcctttccat 10390797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 12271003 - 12270905
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| || |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  12271003 gatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 12270905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 5866644 - 5866742
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| || ||||| |||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  5866644 gatgagttcggatgtcttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 5866742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 80 - 202
Target Start/End: Original strand, 10493957 - 10494079
Alignment:
Q  80 aatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaa 179  Q
    |||||| |||||||||||||||||||| |  ||||| || | ||||| ||||| |||||| ||||  |||||||||||||||||| ||||||||||        
T  10493957 aatttgaatgacttttgcactgaaccgtgtagttcgattcggtttgcagtttgcatctcagcaactaaaccaaaccaaaccaaactgcaagaataatcgt 10494056  T
Q  180 tattacttaaacttgtactagcc 202  Q
    | |||||||||||||||||||||    
T  10494057 tgttacttaaacttgtactagcc 10494079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 6e-74; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 76 - 288
Target Start/End: Original strand, 33910338 - 33910550
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||  || | |||||||||||||||||||||||||||||    
T  33910338 gatgaatttggatgacttttgcactgaaccgcgcggttcggtttggtttgcggtttgcatctcagtaatcaaaccaaaccaaaccaaaccgcaagaataa 33910437  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      |||||||||||||  |||||||||||||||||||| | ||||||||||||||||| |||||||||||||| ||||| ||||||| |||||||||||||    
T  33910438 tgaatattacttaaatatgtactagcccaattacataacttaagaataatctcttttgattcgatttttccaatgttgcaccatcaggttcgattctaat 33910537  T
Q  276 tcctttccatctc 288  Q
    || ||||||||||    
T  33910538 tcttttccatctc 33910550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 76 - 288
Target Start/End: Original strand, 39256197 - 39256409
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    ||||||||||||||||||||||||||||| ||| |||| |||| | ||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  39256197 gatgaatttggatgacttttgcactgaactgcgcggtttggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataa 39256296  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      |||||||||||||| |||||||||| |||||||||||  | ||||||||| |||  |||||||||||||||||||| ||||||| |||||||||||||    
T  39256297 tgaatattacttaaacatgtactagccaaattacatagctcacgaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaat 39256396  T
Q  276 tcctttccatctc 288  Q
    |||||||||||||    
T  39256397 tcctttccatctc 39256409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 77 - 288
Target Start/End: Original strand, 16529054 - 16529265
Alignment:
Q  77 atgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataag 176  Q
    ||||||| ||||| |||||||||||||| |||  |||||||||  | ||||||||| |||||| ||||| ||||||||||||||||||||||||||||      
T  16529054 atgaattcggatggcttttgcactgaacagcgcagttcggtttagtatgcggtttgcatctcagcaaccaaaccaaaccaaaccaaaccgcaagaatagt 16529153  T
Q  177 aaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaatt 276  Q
     |||||||||||||| |||| |||||||||||||||||| |||||||||||||||| |||||| |||| |||||||| ||||||| ||||||||||||||    
T  16529154 gaatattacttaaacatgtaatagcccaattacatagcccaagaataatctcttttgattcgaatttttcattgttgcaccatcaggttcgattctaatt 16529253  T
Q  277 cctttccatctc 288  Q
    ||||||||||||    
T  16529254 cctttccatctc 16529265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 76 - 288
Target Start/End: Original strand, 24910615 - 24910827
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| |||||||||||||| ||||||| |  ||||||||   |||| |||||| |||||| |||||||||||||||||||||||||| ||||||||    
T  24910615 gatgaattcggatgacttttgcattgaaccgtgcagttcggttcagtttgtggtttgcatctcagcaaccgaaccaaaccaaaccaaaccggaagaataa 24910714  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      |||||||||||||| ||||||||||||||||||||||  |||||||||||||||  |||||||||||| ||||||| ||||||| |||||||||||||    
T  24910715 tgaatattacttaaacatgtactagcccaattacatagctcaagaataatctctttcgattcgatttttcaattgttgcaccatcaggttcgattctaat 24910814  T
Q  276 tcctttccatctc 288  Q
    | |||||||||||    
T  24910815 ttctttccatctc 24910827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 85 - 288
Target Start/End: Complemental strand, 33474953 - 33474750
Alignment:
Q  85 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatatta 184  Q
    |||||||||||||||||||||||| ||||||||| | |||| | |||| |||||| |||||||||||||||||||||||| ||||||||||  |||||||    
T  33474953 ggatgacttttgcactgaaccgcgcggttcggttcggtttgtgatttgcatctcatcaaccgaaccaaaccaaaccaaactgcaagaataacgaatatta 33474854  T
Q  185 cttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttcca 284  Q
    ||||||  ||||||||||||||||||||||  |||||||||||||||| ||| ||||||| ||||||||   ||||| ||||||||||||||||||||||    
T  33474853 cttaaatatgtactagcccaattacatagctcaagaataatctcttttgatttgattttttcattgttgcgtcatcaggttcgattctaattcctttcca 33474754  T
Q  285 tctc 288  Q
    ||||    
T  33474753 tctc 33474750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 76 - 288
Target Start/End: Complemental strand, 45692312 - 45692105
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    ||||||||||||||||||||||||||||||||  ||||||||| | ||||||||||| |||||| ||||||||||||| ||||||     ||||||||||    
T  45692312 gatgaatttggatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaacaaacc-----gcaagaataa 45692218  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
     ||||||||||||||  |||||||| ||||||||||| |  |||||||||||||||| |||| |||||| |||||||| ||||| | |||||||||||||    
T  45692217 taaatattacttaaatatgtactagtccaattacataactcaagaataatctcttttgattcaattttttcattgttgcaccattaggttcgattctaat 45692118  T
Q  276 tcctttccatctc 288  Q
    |||||||||||||    
T  45692117 tcctttccatctc 45692105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 76 - 288
Target Start/End: Original strand, 51251992 - 51252194
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| |||||||||||||| |||||||||  |||||||||| ||||||||||| |||||| |||||          ||||||| ||||||||||||    
T  51251992 gatgaattcggatgacttttgcaatgaaccgcgcagttcggtttggtttgcggtttgcatctcagcaacc----------aaaccaacccgcaagaataa 51252081  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      |||||||||||||| |||||||||| |||||||||||| || ||||||||||||| |||||||||||||||||||| |||||||  ||||||||||||    
T  51252082 tgaatattacttaaacatgtactagcctaattacatagccaaataataatctcttttgattcgatttttccattgttgcaccatcaaattcgattctaat 51252181  T
Q  276 tcctttccatctc 288  Q
    |||||||||||||    
T  51252182 tcctttccatctc 51252194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 115 - 269
Target Start/End: Complemental strand, 11899521 - 11899367
Alignment:
Q  115 ggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagc 214  Q
    |||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||  |||||||||||||  ||||||||| ||||||||||||    
T  11899521 ggtttgatttgcggtttgcatctcagcaaccgaatcaaaccaaaccaaaccgcaagaataatgaatattacttaaatatgtactagctcaattacatagc 11899422  T
Q  215 ctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgat 269  Q
      ||||||||||| |||| ||| |||||||||||||||| ||||||| |||||||    
T  11899421 tcaagaataatcttttttgatttgatttttccattgttgcaccatcatgttcgat 11899367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 85 - 284
Target Start/End: Complemental strand, 32954586 - 32954392
Alignment:
Q  85 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatatta 184  Q
    |||||||||||||||| ||||||  ||||| ||| | || |||||||| |||||| ||||||||||||||||||||| |     |||||||  |||||||    
T  32954586 ggatgacttttgcactaaaccgcacggttccgttcggttcgcggtttgcatctcagcaaccgaaccaaaccaaaccata-----agaataatgaatatta 32954492  T
Q  185 cttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttcca 284  Q
    ||||||| ||||| ||||||||||||||||  ||||||||| |||||  |||||||||||||||||||| ||||||| |||| ||||||||| |||||||    
T  32954491 cttaaacatgtacaagcccaattacatagctcaagaataatttctttcgattcgatttttccattgttgcaccatcaggttcaattctaattactttcca 32954392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 157 - 288
Target Start/End: Complemental strand, 44918981 - 44918850
Alignment:
Q  157 aaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtac 256  Q
    ||||| |||||||||||||  |||||||||||||| |||||||| |||||||||||||  ||||||||||| |||| ||| ||||||||||||||||  |    
T  44918981 aaccagaccgcaagaataatgaatattacttaaacatgtactagtccaattacatagctcaagaataatcttttttgatttgatttttccattgttgctc 44918882  T
Q  257 catcacgttcgattctaattcctttccatctc 288  Q
    ||||| ||||||||||||||| ||||||||||    
T  44918881 catcaagttcgattctaattcttttccatctc 44918850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 70 - 288
Target Start/End: Original strand, 1160589 - 1160791
Alignment:
Q  70 ggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaa 169  Q
    |||| |||||||||  ||||||||||||||||||||||  | ||||||| ||||||||||| | |||||| |||||||||||||||||||||||||||||    
T  1160589 ggttcagatgaattcagatgacttttgcactgaaccgcacgattcggttcgatttgcggtt-gcatctcagcaaccgaaccaaaccaaaccaaaccgcaa 1160687  T
Q  170 gaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgat 269  Q
    ||||||  ||               |||||||| |||||||||||  ||||||||||| |||  |||| ||||||||||||||| | ||||| || ||||    
T  1160688 gaataatgaa---------------tactagccaaattacatagctcaagaataatctttttcgattcaatttttccattgttgcaacatcaggtacgat 1160772  T
Q  270 tctaattcctttccatctc 288  Q
    |||||||||||||||||||    
T  1160773 tctaattcctttccatctc 1160791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 72 - 227
Target Start/End: Original strand, 6722380 - 6722529
Alignment:
Q  72 tttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaaga 171  Q
    ||||||||||||||||||||||||||| |||||   | |||||| || ||||||||||||| |||||| ||||||||||||||||||||     ||||||    
T  6722380 tttagatgaatttggatgacttttgcattgaactttgcggttcgattcgatttgcggtttgcatctcagcaaccgaaccaaaccaaacc-----gcaaga 6722474  T
Q  172 ataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatct 227  Q
     |||  |||||||||||||| ||||||  ||||||||||||||  |||||||||||    
T  6722475 -taatgaatattacttaaacatgtactgacccaattacatagctcaagaataatct 6722529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 29389412 - 29389341
Alignment:
Q  217 aagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctc 288  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||    
T  29389412 aagaataatctcttttaattcgatttttccattgttgcaccatcaggttcgattctaattcctctccatctc 29389341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 8211728 - 8211639
Alignment:
Q  85 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  8211728 ggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 8211639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 20494183 - 20494094
Alignment:
Q  85 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    |||||||||||  ||||||||||| ||||||||| ||||||| ||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  20494183 ggatgacttttagactgaaccgcgcggttcggttcgatttgctgtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 20494094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 5154968 - 5155057
Alignment:
Q  85 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    |||||||||||  ||||||||||  ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  5154968 ggatgacttttagactgaaccgcacggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 5155057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 29390191 - 29390133
Alignment:
Q  85 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaa 143  Q
    |||||||||||||||||||||||| ||||||||| | ||||||||||| ||||||||||    
T  29390191 ggatgacttttgcactgaaccgcgcggttcggttcggtttgcggtttgcatctcaacaa 29390133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 29707708 - 29707801
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| || |||||||||||  ||||||||||  |||||||||||     ||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  29707708 gatgagttcggatgacttttagactgaaccgcacggttcggtttg-----cggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 29707801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 44919047 - 44918985
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctc 138  Q
    |||||||| |||| ||||||||||||||| ||| |||| |||||| ||||||||||| |||||    
T  44919047 gatgaattcggataacttttgcactgaactgcgcggtttggtttggtttgcggtttgcatctc 44918985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 45949097 - 45949151
Alignment:
Q  115 ggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaa 169  Q
    ||||||||||||||||| ||| | | ||||||||||||||||||| |||||||||    
T  45949097 ggtttgatttgcggtttttattttaccaaccgaaccaaaccaaacaaaaccgcaa 45949151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 169
Target Start/End: Complemental strand, 12974064 - 12974036
Alignment:
Q  141 caaccgaaccaaaccaaaccaaaccgcaa 169  Q
    |||||||||||||||||||||||||||||    
T  12974064 caaccgaaccaaaccaaaccaaaccgcaa 12974036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 76 - 288
Target Start/End: Original strand, 25297818 - 25298030
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| |||||||||||||  ||||||||  ||||||||||| |||| |||||| |||||| |||||||||||||||||||||||||||||||||||    
T  25297818 gatgaattcggatgacttttgctttgaaccgcacggttcggtttggtttgtggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataa 25297917  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      |||||||||||||| ||||||||||||||||||||||  |||||||||| ||||| |||||||||||||||||||| ||||||| |||||||||||||    
T  25297918 tgaatattacttaaacatgtactagcccaattacatagctcaagaataatcgcttttgattcgatttttccattgttgcaccatcaggttcgattctaat 25298017  T
Q  276 tcctttccatctc 288  Q
    | |||||||||||    
T  25298018 ttctttccatctc 25298030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 76 - 288
Target Start/End: Original strand, 44979337 - 44979549
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| |||||| ||||||||||||||||| |||| | |||| ||||||||||| |||||| | |||||||||||||||||||||||||||||||||    
T  44979337 gatgaattcggatgaattttgcactgaaccgcgcggtttgatttggtttgcggtttgcatctcagctaccgaaccaaaccaaaccaaaccgcaagaataa 44979436  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      ||| |||||||||| ||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||| ||||| | |||| ||||||||    
T  44979437 tgaatgttacttaaacatgtactagcccaattacatagcccaggaataatctcttttgattcgatttttccattgttgcaccatgaggttcaattctaat 44979536  T
Q  276 tcctttccatctc 288  Q
    |||||||||||||    
T  44979537 tcctttccatctc 44979549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 87 - 282
Target Start/End: Complemental strand, 18360310 - 18360115
Alignment:
Q  87 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattact 186  Q
    |||||||||||| |||||| || ||||||||||| ||| | ||||| |||||| |||||||||||||||||||||||||||||||||||  |||||||||    
T  18360310 atgacttttgcattgaaccacgcggttcggtttggtttacagtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataatcaatattact 18360211  T
Q  187 taaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttc 282  Q
    |||||||||||||||||||||||||||||  | ||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| |||||    
T  18360210 taaacttgtactagcccaattacatagcccgaaaataatctcttttgattcgatttttccattgttgcaccatcatgttcgattctaatttctttc 18360115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 85 - 288
Target Start/End: Complemental strand, 44035821 - 44035618
Alignment:
Q  85 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatatta 184  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||||||||| |||||  |||||||    
T  44035821 ggatgacttttgcactgaaccgcgcggttcggtttggtttacggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaataatgaatatta 44035722  T
Q  185 cttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttcca 284  Q
    ||||||| ||||||||| || ||||||| |  |||||||||||||||| ||||||||||| |||||||| || |||| ||||||||||||||||||||||    
T  44035721 cttaaacatgtactagctcagttacataactcaagaataatctcttttgattcgattttttcattgttgcacgatcaagttcgattctaattcctttcca 44035622  T
Q  285 tctc 288  Q
    ||||    
T  44035621 tctc 44035618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 76 - 288
Target Start/End: Complemental strand, 11376402 - 11376195
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    ||||||||  ||||||||||||||||||||||| ||||||||| | ||||| ||||| |||||| |||| |||||||||||     |||||||||||||     
T  11376402 gatgaattcagatgacttttgcactgaaccgcgcggttcggttcggtttgcagtttgcatctcagcaactgaaccaaacca-----aaccgcaagaatac 11376308  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      |||||||||||||| ||||||||| ||||| ||||||| |||||||||| ||||| |||||||||||||||||||| ||||||| |||||||||||||    
T  11376307 tgaatattacttaaacatgtactagctcaattgcatagcccaagaataatcgcttttgattcgatttttccattgttgcaccatcaggttcgattctaat 11376208  T
Q  276 tcctttccatctc 288  Q
    |||||||||||||    
T  11376207 tcctttccatctc 11376195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 110 - 288
Target Start/End: Original strand, 17916454 - 17916634
Alignment:
Q  110 ggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattac 209  Q
    ||||||||||| |||| |||||| |||||| ||||||| |||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||    
T  17916454 ggttcggtttggtttgtggtttgcatctcagcaaccgagccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattac 17916553  T
Q  210 atagcctaagaataatctcttttaattcgatttttccattgttgtaccatc--acgttcgattctaattcctttccatctc 288  Q
    |||||  |||||||||||||||| ||||  |||||||||| ||| ||||||  | |||||||| |||||||||||||||||    
T  17916554 atagctcaagaataatctcttttgattcattttttccattattgcaccatcagaggttcgattataattcctttccatctc 17916634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 76 - 288
Target Start/End: Original strand, 19936687 - 19936894
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    ||||||||  |||| ||||| |||||||| ||| ||||||||| | ||||| |||||||||||| |     |||||||||||||||||||||||||||||    
T  19936687 gatgaattcagatgtctttttcactgaactgcgcggttcggttcggtttgcagtttgtatctcagc-----aaccaaaccaaaccaaaccgcaagaataa 19936781  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      ||||||||||| || ||||||||| ||| ||||||||  ||||||||| | |||| ||||||||||| |||||||| ||||||| |||||||||||||    
T  19936782 tgaatattacttatacatgtactagctcaaatacatagctcaagaataatatattttgattcgattttttcattgttgcaccatcatgttcgattctaat 19936881  T
Q  276 tcctttccatctc 288  Q
    | |||||||||||    
T  19936882 ttctttccatctc 19936894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 110 - 277
Target Start/End: Complemental strand, 34910791 - 34910629
Alignment:
Q  110 ggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattac 209  Q
    ||||||||||| ||| ||||||| |||| | |||||||| |||||||     ||||||||||||||  |||||||||||||| ||||||| |||||||||    
T  34910791 ggttcggtttggtttacggtttgaatctgagcaaccgaaacaaacca-----aaccgcaagaataatgaatattacttaaacatgtactaacccaattac 34910697  T
Q  210 atagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattc 277  Q
    |||||| ||||||||| |||||| |||||||||||||||||||| ||||||| |||||||||||||||    
T  34910696 atagcccaagaataatatcttttgattcgatttttccattgttgcaccatcaagttcgattctaattc 34910629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 9811837 - 9811739
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| || |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  9811837 gatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 9811739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 85 - 175
Target Start/End: Original strand, 42785101 - 42785191
Alignment:
Q  85 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||||||||| |||||| || ||||||||||| ||||||||||| ||||||  ||||||||||||||||||||||||| ||||||||    
T  42785101 ggatgacttttgcattgaaccacgcggttcggtttggtttgcggtttgcatctcagaaaccgaaccaaaccaaaccaaaccgtaagaataa 42785191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 20420875 - 20420777
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| || |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||| ||||||||||||||||||||||||| ||||    
T  20420875 gatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 20420777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 36412923 - 36413021
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| || |||||||||||  ||||||||| | ||||||||| | ||||||||||| |||||| ||| ||||||||||||||||||||||||| ||||    
T  36412923 gatgagttcggatgacttttagactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 36413021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 20420572 - 20420506
Alignment:
Q  224 atctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccatctcct 290  Q
    ||||| |||||||||||||||||||||||| | ||||| ||| ||||||||||||||||||||||||    
T  20420572 atctcctttaattcgatttttccattgttgcatcatcaggtttgattctaattcctttccatctcct 20420506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 16579087 - 16579002
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaacca 161  Q
    ||||| || |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| |||| ||||||||||||||||    
T  16579087 gatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaactgaaccaaaccaaacca 16579002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 44086026 - 44085956
Alignment:
Q  99 ctgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaa 169  Q
    |||||||||  |||| |||||| |||| |||||  || ||| |||||||||||||||||||||||||||||    
T  44086026 ctgaaccgcatggtttggtttggtttgtggttttcatttcaccaaccgaaccaaaccaaaccaaaccgcaa 44085956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 70 - 288
Target Start/End: Complemental strand, 30392606 - 30392388
Alignment:
Q  70 ggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaa 169  Q
    ||||| |||||||| |||||||||||  ||||||||||| |||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30392606 ggtttggatgaattcggatgacttttttactgaaccgcgcggtttggttcagtttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaa 30392507  T
Q  170 gaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgat 269  Q
    ||||||  |||||||||||||| ||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||| || || || | ||| |||    
T  30392506 gaataatgaatattacttaaacatgtactagcccaattacatagcccaacaataatctcttttgattcgatttttccattgctgcactatgaggtttgat 30392407  T
Q  270 tctaattcctttccatctc 288  Q
    |||||||||||||||||||    
T  30392406 tctaattcctttccatctc 30392388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 76 - 288
Target Start/End: Complemental strand, 14549744 - 14549537
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||| |||||| || |||||||||||||||||     | ||||||||    
T  14549744 gatgaattcggatgacttttgcactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcatccgaaccaaaccaaacc-----gtaagaataa 14549650  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      |||||||||||||| ||||||||||||||||||||||  |||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||| |    
T  14549649 tgaatattacttaaacatgtactagcccaattacatagctcaagaataatctcttttgattcgaattttccattgttgtaccatcaggttcgattctatt 14549550  T
Q  276 tcctttccatctc 288  Q
    |||||||||||||    
T  14549549 tcctttccatctc 14549537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 78 - 288
Target Start/End: Original strand, 36827356 - 36827566
Alignment:
Q  78 tgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataaga 177  Q
    |||||| | ||||||||||||||||||| |  |||| |||| | ||||||||||| |||||| || ||||||||||||||||||||||||||||||||      
T  36827356 tgaattcgaatgacttttgcactgaaccacacggtttggttcggtttgcggtttgcatctcagcagccgaaccaaaccaaaccaaaccgcaagaataatg 36827455  T
Q  178 aatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattc 277  Q
    |||||||||||||| ||||||||||||||||||||||  |||| ||||||||||  |||| ||||||||||||||| ||||||| ||||||||||||||     
T  36827456 aatattacttaaacatgtactagcccaattacatagctcaagattaatctctttcgattcaatttttccattgttgcaccatcaggttcgattctaattt 36827555  T
Q  278 ctttccatctc 288  Q
    |||||||||||    
T  36827556 ctttccatctc 36827566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 70 - 290
Target Start/End: Complemental strand, 33069114 - 33068899
Alignment:
Q  70 ggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaa 169  Q
    ||||| ||||| || ||||||||||||||||||||| ||     ||||||||||||||||||| |||| | |||||||||||||| |||||||||| |||    
T  33069114 ggtttggatgatttcggatgacttttgcactgaaccacg-----cggtttgatttgcggtttgcatcttagcaaccgaaccaaacgaaaccaaaccacaa 33069020  T
Q  170 gaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgat 269  Q
     |||||  ||||||||||||| |||||| |||||||||||||| |  |||||||||||||||| ||| |||||||||||||||| |||||||  ||||||    
T  33069019 aaataatcaatattacttaaatttgtaccagcccaattacataactcaagaataatctcttttgatttgatttttccattgttgcaccatcaaattcgat 33068920  T
Q  270 tctaattcctttccatctcct 290  Q
    |||||||||||| ||| ||||    
T  33068919 tctaattccttttcatttcct 33068899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 85 - 287
Target Start/End: Complemental strand, 3682425 - 3682228
Alignment:
Q  85 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatatta 184  Q
    ||||||||||| |||||||||||| |||| |||||| ||||||||||| |||||| ||||||||||||||||||||     ||||||||||  |||||||    
T  3682425 ggatgacttttccactgaaccgcgcggtttggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaacc-----gcaagaataatgaatatta 3682331  T
Q  185 cttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttcca 284  Q
    | ||||| |||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||| ||  ||||||| |||| ||||||||| ||| |||    
T  3682330 cctaaacatgtactagcccaattacataacctaagaataatctcttttgattcaatttttccatttttccaccatcaggttcaattctaatttcttacca 3682231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 76 - 212
Target Start/End: Complemental strand, 44673245 - 44673109
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||||||||||| ||||||||||    
T  44673245 gatgaattcggatgacttttgcactgaaccgcgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaactgcaagaataa 44673146  T
Q  176 gaaatattacttaaacttgtactagcccaattacata 212  Q
      |||||||||||||| ||||||||||||||||||||    
T  44673145 tgaatattacttaaacatgtactagcccaattacata 44673109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 86 - 284
Target Start/End: Complemental strand, 10661658 - 10661461
Alignment:
Q  86 gatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatattac 185  Q
    |||||||||||||||||||| || |||| |||||| |||||| |||| |||||| ||||| ||| |||||||||||||||||||| ||||  |||||  |    
T  10661658 gatgacttttgcactgaaccacgcggtttggtttggtttgcg-tttgcatctcagcaaccaaactaaaccaaaccaaaccgcaaggataatgaatatatc 10661560  T
Q  186 ttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttcca 284  Q
    |||||| ||||||||||| ||||||||||  |||||| |||| |||| ||||||||||| |||||||||||||||| ||||||||||||||| ||||||    
T  10661559 ttaaacatgtactagcccgattacatagctcaagaattatcttttttgattcgattttttcattgttgtaccatcatgttcgattctaattcatttcca 10661461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 85 - 288
Target Start/End: Original strand, 18169602 - 18169800
Alignment:
Q  85 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatatta 184  Q
    |||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||  || |||||||||| |||||      ||||||||||  |||||||    
T  18169602 ggattacttttgcactgaaccgcgtggttcggtttggtttgcggtttgcatctcggcagccgaaccaaatcaaact-----gcaagaataatgaatatta 18169696  T
Q  185 cttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttcca 284  Q
    ||||||| |||||||||||||||||||| |  ||||||||||||| |  |||||||||||||||| ||| ||||||| ||| ||||||||||||||||||    
T  18169697 cttaaacatgtactagcccaattacatacctcaagaataatctctatcgattcgatttttccattattgcaccatcaggtttgattctaattcctttcca 18169796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 85 - 288
Target Start/End: Original strand, 18633168 - 18633366
Alignment:
Q  85 ggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaatatta 184  Q
    |||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||  || |||||||||| |||||      ||||||||||  |||||||    
T  18633168 ggattacttttgcactgaaccgcgtggttcggtttggtttgcggtttgcatctcggcagccgaaccaaatcaaact-----gcaagaataatgaatatta 18633262  T
Q  185 cttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttcca 284  Q
    ||||||| |||||||||||||||||||| |  ||||||||||||| |  |||||||||||||||| ||| ||||||| ||| ||||||||||||||||||    
T  18633263 cttaaacatgtactagcccaattacatacctcaagaataatctctatcgattcgatttttccattattgcaccatcaggtttgattctaattcctttcca 18633362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 76 - 253
Target Start/End: Original strand, 6200498 - 6200675
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| ||||||||||||||||||| || | ||||  ||| | |||  |||||| |||| | ||||| |||||||||||||||||||||||||||||    
T  6200498 gatgaattcggatgacttttgcactgaatcgtgcggtttcgttcggtttttggtttgcatcttagcaaccaaaccaaaccaaaccaaaccgcaagaataa 6200597  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttg 253  Q
      ||||||||| |||| |||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||    
T  6200598 tgaatattactgaaacatgtactagcccaattacataacccaagaataatctcttttgattcgatttttccattgttg 6200675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 76 - 288
Target Start/End: Original strand, 36909910 - 36910106
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    ||||||||| || |||||||||| ||||| ||| ||||||||| | ||||||||||| ||||||  |||||||||| ||||||||     ||||||||||    
T  36909910 gatgaatttagacgacttttgcattgaactgcgcggttcggttcggtttgcggtttgcatctcaggaaccgaaccataccaaacc-----gcaagaataa 36910004  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      |||||          ||||||||||||||||||| ||  ||||||||||| |||| |||| ||||||||||||||| ||||||| ||| |||||||||    
T  36910005 tgaatata---------tgtactagcccaattacat-gctcaagaataatct-ttttgattccatttttccattgttgcaccatcaggtttgattctaat 36910093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 5802528 - 5802602
Alignment:
Q  86 gatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaacc 160  Q
    ||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||| ||||||||||||||    
T  5802528 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccaaaccaaaccaaacc 5802602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 160
Target Start/End: Original strand, 42496462 - 42496546
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaacc 160  Q
    |||||||||| |||| ||||||||||||||||  ||||||||| |||||| | ||| ||||| ||||| ||||||||| ||||||    
T  42496462 gatgaatttgaatgatttttgcactgaaccgcacggttcggttcgatttgtgatttatatcttaacaatcgaaccaaatcaaacc 42496546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 3006199 - 3006283
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaacc 165  Q
    ||||| || |||| ||||||  ||||||||||| |||||||||||     ||||||| |||||| |||||||||||||||||||||||||    
T  3006199 gatgagttcggattacttttagactgaaccgcgcggttcggtttg-----cggtttgcatctcagcaaccgaaccaaaccaaaccaaacc 3006283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 19539729 - 19539686
Alignment:
Q  122 tttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaacc 165  Q
    |||||||||| ||||| | |||||||||||||||||||||||||    
T  19539729 tttgcggtttttatcttatcaaccgaaccaaaccaaaccaaacc 19539686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 169
Target Start/End: Complemental strand, 1271628 - 1271600
Alignment:
Q  141 caaccgaaccaaaccaaaccaaaccgcaa 169  Q
    |||||||||||||||||||||||||||||    
T  1271628 caaccgaaccaaaccaaaccaaaccgcaa 1271600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 8e-67; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 76 - 288
Target Start/End: Complemental strand, 43429689 - 43429477
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| |||||||||||||||| ||||||  ||||||||| | ||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  43429689 gatgaattcggatgacttttgcactaaaccgcatggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataa 43429590  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      | |||||||||||| |||||| | |||||||||||||  ||||| |||||||||| |||||||||||||||||||| ||||||| |||| ||||||||    
T  43429589 tgactattacttaaacgtgtactcgtccaattacatagctcaagaaaaatctcttttgattcgatttttccattgttgcaccatcaggttcaattctaat 43429490  T
Q  276 tcctttccatctc 288  Q
    |||||||||||||    
T  43429489 tcctttccatctc 43429477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 76 - 288
Target Start/End: Original strand, 42910243 - 42910450
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| |||||||||||||||||||||| | ||||||||| | ||||||||||| |||||| ||||||||||     ||||||||||||||||||||    
T  42910243 gatgaattcggatgacttttgcactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaaccgaacc-----aaaccaaaccgcaagaataa 42910337  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      |||||||||||||| ||||||||||||||||||||||  |||||||||||||||| ||| |||||||||||||||| ||||||| || ||||||||||    
T  42910338 tgaatattacttaaacatgtactagcccaattacatagctcaagaataatctcttttgatttgatttttccattgttgcaccatcaggtccgattctaat 42910437  T
Q  276 tcctttccatctc 288  Q
    |||||||||||||    
T  42910438 tcctttccatctc 42910450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 76 - 288
Target Start/End: Original strand, 31876208 - 31876415
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| |||||||||||||| ||||||| | |||||| |||| ||||||||||| |||||| |     ||||||||||||||||||||||| |||||    
T  31876208 gatgaattcggatgacttttgcaatgaaccgtgcggttcgatttggtttgcggtttgcatctcagc-----aaccaaaccaaaccaaaccgcaaaaataa 31876302  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      |||||||||||||| |||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||    
T  31876303 tgaatattacttaaacatgtactagcccagttacatagctcaagaataatctcttttaattcgatttttccattgttgcaccatcagattcgattctaat 31876402  T
Q  276 tcctttccatctc 288  Q
    || ||||||||||    
T  31876403 tcttttccatctc 31876415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 76 - 288
Target Start/End: Complemental strand, 13852827 - 13852617
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| |||||||||||||||||||||| | |||||||||   ||||||||||| |||||| |||| ||||||||||||||||||| ||||||||||    
T  13852827 gatgaattcggatgacttttgcactgaaccgagtggttcggttctgtttgcggtttgcatctcagcaactgaaccaaaccaaaccaaactgcaagaataa 13852728  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      ||||||| |||||  ||||||| | ||||||||||||  |||||||||||||||| ||||||||||| ||||||  |||||||| |||||||| ||||    
T  13852727 tgaatattatttaaatatgtactaactcaattacatagctcaagaataatctcttttgattcgattttttcattgt--taccatcaggttcgattataat 13852630  T
Q  276 tcctttccatctc 288  Q
    |||||||||||||    
T  13852629 tcctttccatctc 13852617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 70 - 287
Target Start/End: Complemental strand, 32824113 - 32823906
Alignment:
Q  70 ggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaa 169  Q
    ||||| |||||||| ||||| |||||||||||||||||  ||||||||| | ||||||||||| |||||| |||||          |||||||||||||     
T  32824113 ggtttggatgaattcggatggcttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcaacc----------aaaccaaaccgcat 32824024  T
Q  170 gaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgat 269  Q
    ||||||  |||||||||||||| ||||||||||||||||||||||  |||||||||||| ||| |||||||||||||||||||| ||||||| |||||||    
T  32824023 gaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctcctttgattcgatttttccattgttgcaccatcaggttcgat 32823924  T
Q  270 tctaattcctttccatct 287  Q
    ||||||||||||||||||    
T  32823923 tctaattcctttccatct 32823906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 70 - 285
Target Start/End: Original strand, 24360851 - 24361064
Alignment:
Q  70 ggtttagatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaa 169  Q
    ||||| |||||||| ||||||||||||||| ||||| |   |||||||| | ||  |||||||  ||||| |||||||||||||||||||||||||||||    
T  24360851 ggtttggatgaattcggatgacttttgcacagaaccacacagttcggttcggtt--cggtttgcgtctcagcaaccgaaccaaaccaaaccaaaccgcaa 24360948  T
Q  170 gaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgat 269  Q
    ||||||  | |||||||||||  ||||||||||||||||||||||  |||||||||| ||||| ||||||||||| |||||||| ||||||| |||| ||    
T  24360949 gaataatgactattacttaaatatgtactagcccaattacatagctcaagaataatcccttttgattcgattttttcattgttgcaccatcaagttcaat 24361048  T
Q  270 tctaattcctttccat 285  Q
    ||||||||||||||||    
T  24361049 tctaattcctttccat 24361064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 75 - 260
Target Start/End: Original strand, 18672781 - 18672966
Alignment:
Q  75 agatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||||||| |||||| ||||||| || ||||||  |||||||| | |||| |||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  18672781 agatgaattcggatgatttttgcattggaccgcgcagttcggttcggtttgtggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaataata 18672880  T
Q  175 agaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatc 260  Q
    |  |||||||||||||||||||||||||||||||||||||  | |||||||||||||| ||| |||||||| ||||||| ||||||    
T  18672881 atcaatattacttaaacttgtactagcccaattacatagcacaggaataatctcttttgattagatttttctattgttgcaccatc 18672966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 76 - 288
Target Start/End: Original strand, 36921118 - 36921327
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| |||| ||||||||| |||||| || ||||||||||| ||||| ||||| |||||| ||||||||||||||||||||     ||||||||||    
T  36921118 gatgaattcggattacttttgcattgaaccacgcggttcggtttggtttgcagtttgcatctcagcaaccgaaccaaaccaaacc-----gcaagaataa 36921212  T
Q  176 gaaatattacttaaacttgtactagccc--aattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattcta 273  Q
      |||||||||||||| ||||||| |||  |||||||||||  |||||||||| ||||| ||||||||||| |||||||| ||||||| |||||||||||    
T  36921213 tgaatattacttaaacatgtactaacccccaattacatagctcaagaataatcgcttttgattcgattttttcattgttgcaccatcaggttcgattcta 36921312  T
Q  274 attcctttccatctc 288  Q
    |||| ||||||||||    
T  36921313 attcttttccatctc 36921327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 76 - 269
Target Start/End: Original strand, 27054290 - 27054483
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    ||||||||  ||||||||||||||| ||||| | | || |||||| ||||||||||| || ||| ||| ||||||||||||||||||||| |||||||||    
T  27054290 gatgaattcagatgacttttgcactaaaccgtgcgatttggtttggtttgcggtttgcatatcagcaatcgaaccaaaccaaaccaaaccacaagaataa 27054389  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgat 269  Q
      |||||||||||||  |||||||||||||||||||| |  |||||||||||||||| ||||||||||| |||||||| ||||||| |||||||    
T  27054390 tgaatattacttaaatatgtactagcccaattacataactcaagaataatctcttttgattcgattttttcattgttgcaccatcatgttcgat 27054483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 152 - 288
Target Start/End: Complemental strand, 22366895 - 22366759
Alignment:
Q  152 aaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgt 251  Q
    ||||||||||||||||||||||||  ||||||||| |||| ||||||||||||||||||||||  ||||||||||||||| |||||| ||||||||||||    
T  22366895 aaccaaaccaaaccgcaagaataatgaatattactcaaacatgtactagcccaattacatagctcaagaataatctctttcaattcggtttttccattgt 22366796  T
Q  252 tgtaccatcacgttcgattctaattcctttccatctc 288  Q
    || ||||||| ||||||||||||||||||||||||||    
T  22366795 tgcaccatcaggttcgattctaattcctttccatctc 22366759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 76 - 290
Target Start/End: Complemental strand, 10070074 - 10069870
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| |||||||||||||||||||||||   |||| ||| | |||||| |||| |||||| |||||          ||||||||||||||||||||    
T  10070074 gatgaattcggatgacttttgcactgaaccgcacagttcagttcggtttgcgatttgcatctcagcaacc----------aaaccaaaccgcaagaataa 10069985  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      ||||||||||||||||||||  |||||||||||||||| ||||||||||| |||| ||| |||||||||||||||| ||||||| ||| |||||||||    
T  10069984 tcaatattacttaaacttgtaccggcccaattacatagcccaagaataatcttttttgatttgatttttccattgttgcaccatcaggtttgattctaat 10069885  T
Q  276 tcctttccatctcct 290  Q
    |||||||||||||||    
T  10069884 tcctttccatctcct 10069870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 76 - 281
Target Start/End: Original strand, 31982233 - 31982428
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    ||||||||  ||||||||||||||||||| ||| |||| |||||||||||||||||| |||| | |||||          |||||||||||||| |||||    
T  31982233 gatgaattcagatgacttttgcactgaactgcgcggtttggtttgatttgcggtttgcatcttagcaacc----------aaaccaaaccgcaaaaataa 31982322  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      ||||||||||||| |||||| ||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| |||||||  ||||||||||||    
T  31982323 tcaatattacttaaatttgtaccagcccaattacatagcccaagaataatctcttttgatttgatttttccattgttgcaccatcaaattcgattctaat 31982422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 277
Target Start/End: Complemental strand, 5933129 - 5932944
Alignment:
Q  86 gatgacttttgcactgaaccgcgaggttcggtttgatt-----tgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataagaaat 180  Q
    ||||||||||||||||||||||| ||||||||| | ||     |||||||||||||||| ||||||||||||||||||||||| || ||||||||         
T  5933129 gatgacttttgcactgaaccgcgcggttcggttcggttcggtttgcggtttgtatctcagcaaccgaaccaaaccaaaccaaatcgtaagaataa----- 5933035  T
Q  181 attacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattc 277  Q
     | |||||||| ||||||||||||||||||||||  |||||||||||||     ||||||||||||||||||| |||||||  || |||||||||||    
T  5933034 -tgacttaaacatgtactagcccaattacatagctcaagaataatctct-----ttcgatttttccattgttgcaccatcagatttgattctaattc 5932944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 141 - 288
Target Start/End: Complemental strand, 48675568 - 48675421
Alignment:
Q  141 caaccgaaccaaaccaaaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgat 240  Q
    |||| ||||||||| ||| ||||||| |||||||| ||||||||||||||| |||| ||||| |||||||||||  || ||||| |||||||  || |||    
T  48675568 caactgaaccaaacaaaatcaaaccgtaagaataataaatattacttaaacatgtattagcctaattacatagctaaaaaataacctcttttggtttgat 48675469  T
Q  241 ttttccattgttgtaccatcacgttcgattctaattcctttccatctc 288  Q
    | ||||||||||| ||||||| ||| ||||||||||| ||||||||||    
T  48675468 tattccattgttgcaccatcaggtttgattctaattcatttccatctc 48675421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 3211768 - 3211866
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| || |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  3211768 gatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 3211866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 47070125 - 47070027
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| || |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  47070125 gatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 47070027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 47204093 - 47204181
Alignment:
Q  86 gatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  47204093 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 47204181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 175
Target Start/End: Complemental strand, 47903740 - 47903641
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| ||||||||||||||||||||||||  ||||| || | ||||||||||| |||||| ||||||||||||| ||| ||||||| |||||||||    
T  47903740 gatgaattcggatgacttttgcactgaaccgcgcagttcgtttcggtttgcggtttgcatctcagcaaccgaaccaaaacaacccaaaccacaagaataa 47903641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 10672276 - 10672178
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| || |||||||||||  ||||||||| | ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  10672276 gatgagttcggatgacttttagactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 10672178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 12118057 - 12117959
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    ||||| || |||||||||||  ||||||||||| ||||||||| | |||||| |||| |||||| ||||| ||||||||||||| ||||||||| ||||    
T  12118057 gatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcgatttgcatctcagcaaccaaaccaaaccaaactaaaccgcaaaaata 12117959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 160
Target Start/End: Original strand, 8768292 - 8768376
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaacc 160  Q
    ||||| || |||||||||||  ||||||||||| ||||||||| | |||| |||||| |||||| ||||||||||||||||||||    
T  8768292 gatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgtggtttgcatctcagcaaccgaaccaaaccaaacc 8768376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 155
Target Start/End: Original strand, 11206004 - 11206083
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaacc 155  Q
    ||||| || |||||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| |||||||||||||||    
T  11206004 gatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaacc 11206083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 36509086 - 36509028
Alignment:
Q  157 aaccaaaccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcc 215  Q
    |||||||||||||||||||  ||||||||||||| |||||| |||||||||||||||||    
T  36509086 aaccaaaccgcaagaataatcaatattacttaaatttgtacgagcccaattacatagcc 36509028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 285
Target Start/End: Complemental strand, 47903636 - 47903546
Alignment:
Q  195 tactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaattcctttccat 285  Q
    |||||||| |||||||||||  ||||||| | | |||  ||||||||||| |||||||| ||||||| |||||||| |||||| |||||||    
T  47903636 tactagccaaattacatagctcaagaatactatttttcgattcgattttttcattgttgcaccatcaggttcgattataattcatttccat 47903546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 40849418 - 40849325
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaa 169  Q
    |||| ||| |||| ||||||  ||| ||||||  |||| |||||| ||||||||||  || | | |||||||||||||||||||||||||||||    
T  40849418 gatgtattcggatcacttttttactcaaccgcatggtttggtttggtttgcggttttcattttaccaaccgaaccaaaccaaaccaaaccgcaa 40849325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 524425 - 524484
Alignment:
Q  110 ggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaa 169  Q
    |||| |||||| ||||||||||  || | | |||||||||||||||||||||||||||||    
T  524425 ggtttggtttggtttgcggttttcattttaccaaccgaaccaaaccaaaccaaaccgcaa 524484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 36509142 - 36509096
Alignment:
Q  87 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgt 133  Q
    |||||||||||| ||||||| | ||||||||||| ||||||||||||    
T  36509142 atgacttttgcattgaaccgtgcggttcggtttggtttgcggtttgt 36509096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 169
Target Start/End: Complemental strand, 29628708 - 29628680
Alignment:
Q  141 caaccgaaccaaaccaaaccaaaccgcaa 169  Q
    |||||||||||||||||||||||||||||    
T  29628708 caaccgaaccaaaccaaaccaaaccgcaa 29628680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 169
Target Start/End: Original strand, 30079179 - 30079207
Alignment:
Q  141 caaccgaaccaaaccaaaccaaaccgcaa 169  Q
    |||||||||||||||||||||||||||||    
T  30079179 caaccgaaccaaaccaaaccaaaccgcaa 30079207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 76 - 288
Target Start/End: Original strand, 40136 - 40348
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| |||||||||||||||||||||||| || |||||||| |||| |||||  |||||||||||||||||||||||||||||||| |||||||||    
T  40136 gatgaattcggatgacttttgcactgaaccgcgtggctcggtttggtttgtggttttcatctcaacaaccgaaccaaaccaaaccaaaccacaagaataa 40235  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      |||||||||||||| | ||||||||||||||||||||  ||||||||| |||||| |||| |||| |||||||||| | ||||| |||| ||||||||    
T  40236 tgaatattacttaaacatctactagcccaattacatagctcaagaataatttcttttgattcaatttgtccattgttgcaacatcaggttccattctaat 40335  T
Q  276 tcctttccatctc 288  Q
    |  ||||||||||    
T  40336 ttatttccatctc 40348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 76 - 288
Target Start/End: Original strand, 47332 - 47544
Alignment:
Q  76 gatgaatttggatgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 175  Q
    |||||||| |||||||||||||||||||||||  || |||||||| |||| |||||  |||||||||||||||||||||||||||||||| |||||||||    
T  47332 gatgaattcggatgacttttgcactgaaccgcatggctcggtttggtttgtggttttcatctcaacaaccgaaccaaaccaaaccaaaccacaagaataa 47431  T
Q  176 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgtaccatcacgttcgattctaat 275  Q
      |||||||||||||| | ||||||||||||||||||||  ||||||||| |||||| ||||||||| |||||||||| | ||||| |||| ||||||||    
T  47432 tgaatattacttaaacatctactagcccaattacatagctcaagaataatttcttttgattcgatttgtccattgttgcaacatcaggttccattctaat 47531  T
Q  276 tcctttccatctc 288  Q
    |  ||||||||||    
T  47532 ttatttccatctc 47544  T

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Target: scaffold0308 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 87 - 174
Target Start/End: Original strand, 5490 - 5577
Alignment:
Q  87 atgacttttgcactgaaccgcgaggttcggtttgatttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 174  Q
    |||||||||  ||||||||||| ||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  5490 atgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 5577  T

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