View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_high_46 (Length: 292)
Name: NF1084_high_46
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_high_46 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 54 - 267
Target Start/End: Complemental strand, 53090359 - 53090149
Alignment:
| Q |
54 |
cttgcttgtatttgtgtcttttgctttcttcaccgtctaattgaataaaggaagtgaagggnnnnnnnnnnttctgcttttaatttttacttttgtctgt |
153 |
Q |
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| T |
53090359 |
cttgcttgtatttgtgtcttttgctttcttcaccgtctaattgaataaaggaagtgaag---aaaaaaaaattctgcttttaatttttacttttgtctgt |
53090263 |
T |
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| Q |
154 |
gcacaatatataagtaaattcatttgtgttttcaatatagcgtgacaagagaaatgctagcaacacacattgttggaaaatgtatgttagaatgtgtgtt |
253 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| ||| | |||||||||| ||||||| |
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| T |
53090262 |
gcactatatataagtaaattcatttgtgctttcaatatagtgtgacaagagaaatgctagcaacacacattattgaaaagtatatgttagaacgtgtgtt |
53090163 |
T |
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| Q |
254 |
gataacatttctca |
267 |
Q |
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| T |
53090162 |
gataacatttctca |
53090149 |
T |
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