View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1084_high_48 (Length: 277)

Name: NF1084_high_48
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1084_high_48
NF1084_high_48
[»] chr2 (12 HSPs)
chr2 (28-277)||(43223886-43224134)
chr2 (28-211)||(41654905-41655090)
chr2 (28-125)||(41650635-41650732)
chr2 (28-119)||(43206087-43206178)
chr2 (28-126)||(43213022-43213120)
chr2 (28-125)||(43227419-43227516)
chr2 (224-277)||(43227882-43227935)
chr2 (226-277)||(43213348-43213399)
chr2 (226-277)||(41650224-41650275)
chr2 (226-277)||(41654764-41654815)
chr2 (222-277)||(43206370-43206425)
chr2 (28-77)||(31558552-31558601)
[»] chr8 (3 HSPs)
chr8 (28-123)||(5072713-5072808)
chr8 (240-274)||(31839458-31839492)
chr8 (240-277)||(26262851-26262888)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 28 - 277
Target Start/End: Original strand, 43223886 - 43224134
Alignment:
Q  28 caccaagaagcatagcaacatgagcatcatggccacatgcatgcatctttccaggcacttcactcttatgctcccactccaccaattcctaaggttaacc 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43223886 caccaagaagcatagcaacatgagcatcatggccacatgcatgcatctttccaggcactttactcttatgctcccactccaccaattcctaaggttaacc 43223985  T
Q  128 nnnnnnnntcatcaatgaaatatagatgaaacagtatcctaatataaaatccaagataatatatggttgaaaaccaaaacactcagnnnnnnntgtagac 227  Q
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||       |||||||    
T  43223986 aaaaaaaatcatcaatgaaatatagatgaaacagtatcctaataaaaaatccaagataatatatggttgaaaaccaaaacactcag-aaaaaatgtagac 43224084  T
Q  228 ctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaa 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43224085 ctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaa 43224134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 28 - 211
Target Start/End: Complemental strand, 41655090 - 41654905
Alignment:
Q  28 caccaagaagcatagcaacatgagcatcatggccacatgcatgcatctttccaggcacttcactcttatgctcccactccaccaattcctaaggttaacc 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41655090 caccaagaagcatagcaacatgagcatcatggccacatgcatgcatctttccaggcactttactcttatgctcccactccaccaattcctaaggttaacc 41654991  T
Q  128 -nnnnnnnntcatcaatgaaatatagatgaaacag--tatcctaatataaaatccaagataatatatggttgaaaaccaaaacactc 211  Q
             ||||||||||||||||||||||||||  ||||||||||||||||  | || ||||||| ||| |||||||||||||||    
T  41654990 aaaaaaaattcatcaatgaaatatagatgaaacagtatatcctaatataaaatatatgacaatatat-gtttaaaaccaaaacactc 41654905  T

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Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 41650732 - 41650635
Alignment:
Q  28 caccaagaagcatagcaacatgagcatcatggccacatgcatgcatctttccaggcacttcactcttatgctcccactccaccaattcctaaggttaa 125  Q
    |||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||    
T  41650732 caccaagaagcatagccacgtgagcatcatgaccacatgcatgcatctttccaggtactttactcttatgctcccactccaccaattcctaatgttaa 41650635  T

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Target: chr2; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 28 - 119
Target Start/End: Original strand, 43206087 - 43206178
Alignment:
Q  28 caccaagaagcatagcaacatgagcatcatggccacatgcatgcatctttccaggcacttcactcttatgctcccactccaccaattcctaa 119  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||||||| |||||||    
T  43206087 caccaagaagcatagcaacatgagcatcatgaccacatgcatgcatctttccaggtactttacttttatgctcccactccaccatttcctaa 43206178  T

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Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 43213022 - 43213120
Alignment:
Q  28 caccaagaagcatagcaacatgagcatcatggccacatgcatgcatctttccaggcacttcactcttatgctcccactccaccaattcctaaggttaac 126  Q
    |||| |||||||||||||||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||| | ||||||    
T  43213022 cacctagaagcatagcaacatgagcatcatgaccacatccatgcatctttccaggtactttactcttatgctcccactccaccaattcctgaagttaac 43213120  T

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Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 43227419 - 43227516
Alignment:
Q  28 caccaagaagcatagcaacatgagcatcatggccacatgcatgcatctttccaggcacttcactcttatgctcccactccaccaattcctaaggttaa 125  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||  || ||||||||||| |||| |||||||||| |||||    
T  43227419 caccaagaagcatagcaacatgagcatcatgaccacatgcatgcatctttccaggtactttgcttttatgctcccattccaacaattcctaatgttaa 43227516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 43227882 - 43227935
Alignment:
Q  224 agacctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaa 277  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43227882 agacctgcatgagaagagcatccatgtcagctctaagagcaacaaaaggaggaa 43227935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 226 - 277
Target Start/End: Original strand, 43213348 - 43213399
Alignment:
Q  226 acctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaa 277  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  43213348 acctgcataagaagagcatccatctcagctctaagagcgacaaaaggaggaa 43213399  T

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Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 41650275 - 41650224
Alignment:
Q  226 acctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaa 277  Q
    ||||||||||||||||||||||| |||||||| ||||| |||||||||||||    
T  41650275 acctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaa 41650224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 41654815 - 41654764
Alignment:
Q  226 acctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaa 277  Q
    |||||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  41654815 acctgcataagaagagcatccatttcagctctgagagcgacaaaaggaggaa 41654764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 43206370 - 43206425
Alignment:
Q  222 gtagacctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaa 277  Q
    ||||||||| || |||||||||||||| |||||||||||||| |||||||||||||    
T  43206370 gtagacctgaataagaagagcatccatatcagctctaagagcaacaaaaggaggaa 43206425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 31558601 - 31558552
Alignment:
Q  28 caccaagaagcatagcaacatgagcatcatggccacatgcatgcatcttt 77  Q
    ||||||| ||||| | ||||||||||||||| ||||| ||||||||||||    
T  31558601 caccaagtagcatggtaacatgagcatcatgaccacacgcatgcatcttt 31558552  T

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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 5072713 - 5072808
Alignment:
Q  28 caccaagaagcatagcaacatgagcatcatggccacatgcatgcatctttccaggcacttcactcttatgctcccactccaccaattcctaaggtt 123  Q
    ||||||| ||||| | ||||||||||||||| ||||| ||||||||||||||||| || | |||| | |||||||||||||||| |||||||||||    
T  5072713 caccaagtagcatggtaacatgagcatcatgaccacacgcatgcatctttccaggtaccttactcctgtgctcccactccaccatttcctaaggtt 5072808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 31839458 - 31839492
Alignment:
Q  240 agcatccatgtcagctctaagagcgacaaaaggag 274  Q
    |||||||||||||||||||||||| ||||||||||    
T  31839458 agcatccatgtcagctctaagagcaacaaaaggag 31839492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 26262888 - 26262851
Alignment:
Q  240 agcatccatgtcagctctaagagcgacaaaaggaggaa 277  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  26262888 agcatccatgtcagctctaagagcaacaaatggaggaa 26262851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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