View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_high_65 (Length: 251)
Name: NF1084_high_65
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_high_65 |
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| [»] chr5 (10 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 29990573 - 29990811
Alignment:
| Q |
13 |
aatatggtccaattatgtctttacaacttggtcaagttccaacaattgtcatttcatcttcaaaagcagcagaatcattcctcaaaacccatgacatcgt |
112 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29990573 |
aatatggtccaattatgtctttacaacttggacaagttccaacaattgtcatttcatcttcaaaagcagcagaatcattcctcaaaacccatgacatcgt |
29990672 |
T |
|
| Q |
113 |
tttcgcaaaccgaccgaaacttataggagcacagatcatatcttatggttgcaaagggttggcgttttctaagtacgacccttattggcgtagtgtaaag |
212 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29990673 |
tttcgcaaaccgaccgaaacttataggagcagagatcatatcttatggttgcaaagggttggcgttttctaagtacgacccttattggcgtagtgtaaag |
29990772 |
T |
|
| Q |
213 |
aaactgtgcactttgaaacttcttagtgcttcaaaagtt |
251 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| |
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| T |
29990773 |
aaactctgcactttgaaacttcttagtgcttcaaaagtt |
29990811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 29943742 - 29943980
Alignment:
| Q |
13 |
aatatggtccaattatgtctttacaacttggtcaagttccaacaattgtcatttcatcttcaaaagcagcagaatcattcctcaaaacccatgacatcgt |
112 |
Q |
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||||||||||||| ||||| |||||||| |||||||| ||| | ||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| |
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| T |
29943742 |
aatatggtccaatcatgtccttacaactaggtcaagtcccagctattgtcatttcatcttcaaaagccgcagagtcattcgtcaaaacccatgacatcgt |
29943841 |
T |
|
| Q |
113 |
tttcgcaaaccgaccgaaacttataggagcacagatcatatcttatggttgcaaagggttggcgttttctaagtacgacccttattggcgtagtgtaaag |
212 |
Q |
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|||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
29943842 |
tttcgcaaaccgaccggaacttgtaggagcacagatcatgtcttatggttgcaaagggttggcgttttctaagtacgactcttattggcgtagtgtgaga |
29943941 |
T |
|
| Q |
213 |
aaactgtgcactttgaaacttcttagtgcttcaaaagtt |
251 |
Q |
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||||| || |||| ||||||||||||||||| |||||| |
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| T |
29943942 |
aaactttgtacttcaaaacttcttagtgcttcgaaagtt |
29943980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 29999278 - 29999515
Alignment:
| Q |
14 |
atatggtccaattatgtctttacaacttggtcaagttccaacaattgtcatttcatcttcaaaagcagcagaatcattcctcaaaacccatgacatcgtt |
113 |
Q |
| |
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|||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29999278 |
atatggtccaatcatgtccttacaacttggtcaagttccaacaattgttatttcatcttcaaaaggagcagaatcattcctcaaaacccatgacatcgtt |
29999377 |
T |
|
| Q |
114 |
ttcgcaaaccgaccgaaacttataggagcacagatcatatcttatggttgcaaagggttggcgttttctaagtacgacccttattggcgtagtgtaaaga |
213 |
Q |
| |
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||||||| ||||||||| || |||| || || |||| || ||||||| ||||||||| | |||||| |||| | ||||||||||| ||| | | || |
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| T |
29999378 |
ttcgcaagccgaccgaagattcaaggatcagagctcatgtcctatggttctaaagggttgcctttttctgagtatggtccttattggcgcagtatgagga |
29999477 |
T |
|
| Q |
214 |
aactgtgcactttgaaacttcttagtgcttcaaaagtt |
251 |
Q |
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|| | ||||||||||||||||||||||||||||||||| |
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| T |
29999478 |
aattttgcactttgaaacttcttagtgcttcaaaagtt |
29999515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 30045439 - 30045201
Alignment:
| Q |
13 |
aatatggtccaattatgtctttacaacttggtcaagttccaacaattgtcatttcatcttcaaaagcagcagaatcattcctcaaaacccatgacatcgt |
112 |
Q |
| |
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||||||||||||| ||||| ||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30045439 |
aatatggtccaatcatgtccttacaacttggtcaagtcccagctattgtcatttcatcttcaaaagcagcagaatcattcctcaaaacccacgacatcgt |
30045340 |
T |
|
| Q |
113 |
tttcgcaaaccgaccgaaacttataggagcacagatcatatcttatggttgcaaagggttggcgttttctaagtacgacccttattggcgtagtgtaaag |
212 |
Q |
| |
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|||||||| |||||| || || |||| | || |||| |||||||||| ||||||| |||| |||| | |||| | ||||||||||||||||| | | |
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| T |
30045339 |
tttcgcaagccgaccaaagattcaaggatctgagctcatgtcttatggttccaaagggatggctttttgtgagtatggtccttattggcgtagtgtgagg |
30045240 |
T |
|
| Q |
213 |
aaactgtgcactttgaaacttcttagtgcttcaaaagtt |
251 |
Q |
| |
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||| | ||||||||||||||||||||||||||||||||| |
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| T |
30045239 |
aaattttgcactttgaaacttcttagtgcttcaaaagtt |
30045201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 29962968 - 29963206
Alignment:
| Q |
13 |
aatatggtccaattatgtctttacaacttggtcaagttccaacaattgtcatttcatcttcaaaagcagcagaatcattcctcaaaacccatgacatcgt |
112 |
Q |
| |
|
|||||||| |||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
29962968 |
aatatggttcaatcatgtccttacaacttggtcaagttccaacaattgttatttcatcttcaaaagctgcagaatcattcctcaaaactcatgacatcaa |
29963067 |
T |
|
| Q |
113 |
tttcgcaaaccgaccgaa-acttataggagcacagatcatatcttatggttgcaaagggttggcgttttctaagtacgacccttattggcgtagtgtaaa |
211 |
Q |
| |
|
||| |||| || || || ||| | || | | ||| |||| | |||||||| |||||||||||| |||||| |||| | |||||||||||||||||||| |
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| T |
29963068 |
ttttgcaagtcggccaaagactca-agcatctcagctcattttttatggttccaaagggttggctttttctgagtatggtccttattggcgtagtgtaaa |
29963166 |
T |
|
| Q |
212 |
gaaactgtgcactttgaaacttcttagtgcttcaaaagtt |
251 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |
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| T |
29963167 |
gaaactttgcactttgaaacttcttagtgcttcaaaagtt |
29963206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 30011830 - 30011592
Alignment:
| Q |
13 |
aatatggtccaattatgtctttacaacttggtcaagttccaacaattgtcatttcatcttcaaaagcagcagaatcattcctcaaaacccatgacatcgt |
112 |
Q |
| |
|
|||||||| |||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
30011830 |
aatatggttcaatcatgtccttacaacttggtcaagttccaacaattgttatttcatcttcaaaagctgcagaatcattcctcaaaactcatgacatcaa |
30011731 |
T |
|
| Q |
113 |
tttcgcaaaccgaccgaa-acttataggagcacagatcatatcttatggttgcaaagggttggcgttttctaagtacgacccttattggcgtagtgtaaa |
211 |
Q |
| |
|
||| |||| || || || ||| | || | | ||| |||| | |||||||| |||||||||||| |||||| |||| | |||||||||||||||||||| |
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| T |
30011730 |
ttttgcaagtcggccaaagactca-agcatctcagctcattttttatggttccaaagggttggctttttctgagtatggtccttattggcgtagtgtaaa |
30011632 |
T |
|
| Q |
212 |
gaaactgtgcactttgaaacttcttagtgcttcaaaagtt |
251 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |
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| T |
30011631 |
gaaactttgcactttgaaacttcttagtgcttcaaaagtt |
30011592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 30005715 - 30005953
Alignment:
| Q |
13 |
aatatggtccaattatgtctttacaacttggtcaagttccaacaattgtcatttcatcttcaaaagcagcagaatcattcctcaaaacccatgacatcgt |
112 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
30005715 |
aatatggtccaatcatgtccttacaacttggtcaagttccaactattatcatttcatcttcaaaagctgcagaatcattcctcaaaactcatgacatcgt |
30005814 |
T |
|
| Q |
113 |
tttcgcaaaccgaccgaaacttataggagcacagatcatatcttatggttgcaaagggttggcgttttctaagtacgacccttattggcgtagtgtaaag |
212 |
Q |
| |
|
||| |||| ||||| || || |||| || | |||| |||||||||| ||||||| |||| |||||| |||| | ||||||||||||||||| | | |
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| T |
30005815 |
ttttgcaagtcgaccaaaggttcaaggatcagatctcatgtcttatggttccaaagggatggctttttctgagtatggtccttattggcgtagtgtgagg |
30005914 |
T |
|
| Q |
213 |
aaactgtgcactttgaaacttcttagtgcttcaaaagtt |
251 |
Q |
| |
|
||| | ||||||||||||||| ||||||||||||||||| |
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|
| T |
30005915 |
aaattttgcactttgaaactttttagtgcttcaaaagtt |
30005953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 30071269 - 30071031
Alignment:
| Q |
13 |
aatatggtccaattatgtctttacaacttggtcaagttccaacaattgtcatttcatcttcaaaagcagcagaatcattcctcaaaacccatgacatcgt |
112 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
30071269 |
aatatggtccaatcatgtccttacaacttggtcaagttccaactattatcatttcatcttcaaaagctgcagaatcatttctcaaaacccatgacatcgt |
30071170 |
T |
|
| Q |
113 |
tttcgcaaaccgaccgaaacttataggagcacagatcatatcttatggttgcaaagggttggcgttttctaagtacgacccttattggcgtagtgtaaag |
212 |
Q |
| |
|
||| |||| |||||| || | |||| | || |||| | ||||||| ||||||| | | |||||| | || | ||||||||||||||||| | | |
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|
| T |
30071169 |
ttttgcaagccgaccaaagagtcaaggatctgagctcatgttatatggttccaaagggatagttttttctgactatggtccttattggcgtagtgtgagg |
30071070 |
T |
|
| Q |
213 |
aaactgtgcactttgaaacttcttagtgcttcaaaagtt |
251 |
Q |
| |
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||| | ||||||||||||||||||||||||||||||||| |
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| T |
30071069 |
aaattttgcactttgaaacttcttagtgcttcaaaagtt |
30071031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 29949410 - 29949507
Alignment:
| Q |
13 |
aatatggtccaattatgtctttacaacttggtcaagttccaacaattgtcatttcatcttcaaaagcagcagaatcattcctcaaaacccatgacatc |
110 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||| | ||||| ||||||||||| |||||||||||||||||||| || |||||| |
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|
| T |
29949410 |
aatatggtccaatcatgtccttacaacttggtcaagttccaacaattataatttcttcttcaaaagctgcagaatcattcctcaaaactcacgacatc |
29949507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 29952006 - 29952101
Alignment:
| Q |
156 |
tatggttgcaaagggttggcgttttctaagtacgacccttattggcgtagtgtaaagaaactgtgcactttgaaacttcttagtgcttcaaaagtt |
251 |
Q |
| |
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||||||| |||||||||||| ||||||||||| | ||||||||||||||||| | |||||| |||||||| |||||||||||||||||||||||| |
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| T |
29952006 |
tatggttccaaagggttggctttttctaagtatggtccttattggcgtagtgtgaggaaactttgcactttaaaacttcttagtgcttcaaaagtt |
29952101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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