View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_low_101 (Length: 251)
Name: NF1084_low_101
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_101 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 2835614 - 2835374
Alignment:
| Q |
11 |
cacagaggtacgaatcaaccaacttagcaaccttaaccaaagcagcaccacttttagcaccttcattatccaaactaacaaacctcttaacaagcctaat |
110 |
Q |
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| T |
2835614 |
cacaaaggtacgaatcaaccaacttagcaaccttaaccaaagcagcaccacttttagcaccttcattatccaaactaacaaacctcttaacaagcctaat |
2835515 |
T |
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| Q |
111 |
aacaagctcaaaatccaaaagtgtcccacaagtgtgactaaaagaaggaataacaagttctttcaaacaagcttgatctaactgccatgaaattctcttc |
210 |
Q |
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| T |
2835514 |
aacaagctcaaaatccaaaagtgtcccacaagtgtgactaaaagaaggaataacaagttctttcaaacaagcttgatctaactgccatgaaattctcttc |
2835415 |
T |
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| Q |
211 |
tctagctcttgtctatagcttccatcaacacctaccatgtt |
251 |
Q |
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| T |
2835414 |
tctagctcttgtctatagcttccatcaacacctaccatgtt |
2835374 |
T |
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Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 44265365 - 44265547
Alignment:
| Q |
23 |
aatcaaccaacttagcaaccttaaccaaagcagcaccacttttagcaccttcattatccaaactaacaaacctcttaacaagcctaataacaagctcaaa |
122 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||| | || |||| ||| ||||||| |||||||||||| | ||||||||||||||||| |
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| T |
44265365 |
aatcaaccaatttagcaaccttaaccaaagcagcaccagttttaactccatcatgatctaaactaataaacctcttaaccaacctaataacaagctcaac |
44265464 |
T |
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| Q |
123 |
atccaaaagtgtcccacaagtgtgactaaaagaaggaataacaagttctttcaaacaagcttgatctaactgccatgaaattc |
205 |
Q |
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| T |
44265465 |
atccaaaagggtcccacaagtatgactgaaagaaggtatcatgagttctttcaatgaagcttgatctaactgccatgaaattc |
44265547 |
T |
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