View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_low_104 (Length: 251)
Name: NF1084_low_104
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_104 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 29022824 - 29022978
Alignment:
| Q |
19 |
agctttcagtttattcaataaggatgatagaaagaatggaatgaaattattgcgagatagaggaagaaattgcagctgagtattgagagatgaggaagtg |
118 |
Q |
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| T |
29022824 |
agctttcagtttattcaataaggatggtagaaagaatggaatgaaattattgcgagatagaggaagaaatagcagctgcgtattgagagatgaggaagtg |
29022923 |
T |
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| Q |
119 |
tgtagaaacagtgaagaaggttgtggaaaaatggaaggaatatgcagaaactgag |
173 |
Q |
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||||||||||||||||||||||||||| |||||||||| ||||| || ||||||| |
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| T |
29022924 |
tgtagaaacagtgaagaaggttgtggagaaatggaagggatatgtagcaactgag |
29022978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 23357839 - 23357993
Alignment:
| Q |
19 |
agctttcagtttattcaataaggatgatagaaagaatggaatgaaattattgcgagatagaggaagaaattgcagctgagtattgagagatgaggaagtg |
118 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| |
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| T |
23357839 |
agctttcagtttattcaataaggatggtagaaagaatggaatgaaattattgcgagatagaggaagaaattgcaattgtgtattaagagatgaggaagtg |
23357938 |
T |
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| Q |
119 |
tgtagaaacagtgaagaaggttgtggaaaaatggaaggaatatgcagaaactgag |
173 |
Q |
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| T |
23357939 |
tgtagaaacagtgaagaaggttgtggagaaatggaagggatatgccgaaactgag |
23357993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 41741116 - 41740967
Alignment:
| Q |
19 |
agctttcagtttattcaataaggatgatagaaagaatggaatgaaattattgcgagatagaggaagaaattgcagctgagtattgagagatgaggaagtg |
118 |
Q |
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| T |
41741116 |
agctttcagtttattcaataaggatggtagaaagaatggaatgaaattattgtgagatagaggaagaaattgcagttgtgtattgagagatgaggaagtg |
41741017 |
T |
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| Q |
119 |
tgtagaaacagtgaagaaggttgtggaaaaatggaaggaatatgcagaaa |
168 |
Q |
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||||||||| ||||||||||||||||| |||| ||||| ||||||||||| |
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| T |
41741016 |
tgtagaaaccgtgaagaaggttgtggagaaattgaagggatatgcagaaa |
41740967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 292243 - 292096
Alignment:
| Q |
19 |
agctttcagtttattcaataaggatgatagaaagaatggaatgaaattattgcgagatagaggaagaaattgcagctgagtattgagagatgaggaagtg |
118 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| |
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| T |
292243 |
agctttcagtttatttaataaggatggtagaaagaatggaatgaaattattgcgagatagaggaagaaattgcaactgtgtattgagagatgagaaagtg |
292144 |
T |
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| Q |
119 |
tgtagaaacagtgaagaaggttgtggaaaaatggaaggaatatgcaga |
166 |
Q |
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||||||||| ||||||||| ||||||| |||||||||| ||||||||| |
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| T |
292143 |
tgtagaaaccgtgaagaagtttgtggagaaatggaagggatatgcaga |
292096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 28987825 - 28987668
Alignment:
| Q |
19 |
agctttcagtttattcaataaggatgatagaaagaatggaatgaaattattgcgagatagagga---agaaattgcagctgagtattgagagatgaggaa |
115 |
Q |
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||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||| ||| ||||| |||||||||||| |
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| T |
28987825 |
agctttcagcttattcaataaggatggtagaaagaatggaatgaaattattgagagatagaggaagaagaaattgcaactgtgtattaagagatgaggaa |
28987726 |
T |
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| Q |
116 |
gtgtgtagaaacagtgaagaaggttgtggaaaaatggaaggaatatgcagaaactgag |
173 |
Q |
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| T |
28987725 |
gggtgtagaaacagtgaagaaagttgtggagaaatggaagggaaacacagaaactgag |
28987668 |
T |
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