View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1084_low_108 (Length: 247)

Name: NF1084_low_108
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1084_low_108
NF1084_low_108
[»] chr1 (3 HSPs)
chr1 (174-242)||(48666398-48666466)
chr1 (174-242)||(48628155-48628223)
chr1 (186-242)||(48655834-48655890)
[»] chr5 (1 HSPs)
chr5 (2-66)||(9418134-9418198)
[»] chr7 (1 HSPs)
chr7 (2-59)||(12003384-12003441)


Alignment Details
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 48666398 - 48666466
Alignment:
Q  174 ccacaaaccgccactgcttcctccgccgcctttttcaacttggttgcatttttcttcaacgtctctgct 242  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48666398 ccaccaaccgccactgcttcctccgccgcctttttcaacttggttgcatttttcttcaacgtctctgct 48666466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 48628155 - 48628223
Alignment:
Q  174 ccacaaaccgccactgcttcctccgccgcctttttcaacttggttgcatttttcttcaacgtctctgct 242  Q
    |||| ||| |||||||||||||| ||| |||| ||| ||||  |||||||||||||||||  |||||||    
T  48628155 ccaccaacggccactgcttcctctgcctccttcttccacttcattgcatttttcttcaactcctctgct 48628223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 48655834 - 48655890
Alignment:
Q  186 actgcttcctccgccgcctttttcaacttggttgcatttttcttcaacgtctctgct 242  Q
    ||||| |||||||| ||||| ||| ||||| |||||||||||||||||  |||||||    
T  48655834 actgcatcctccgctgccttcttccacttgattgcatttttcttcaactcctctgct 48655890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 9418198 - 9418134
Alignment:
Q  2 atgatgctttggatgagcaactttagaaggttatcccactcagaggtatgaataattttaacatg 66  Q
    ||||||||||||| ||||||||||||||||| |||| |||||||||||  |||||||||||||||    
T  9418198 atgatgctttggaagagcaactttagaaggtcatccaactcagaggtaataataattttaacatg 9418134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 12003384 - 12003441
Alignment:
Q  2 atgatgctttggatgagcaactttagaaggttatcccactcagaggtatgaataattt 59  Q
    ||||||||||| | ||||||||||||||||| |||| |||||||||||  ||||||||    
T  12003384 atgatgctttgcaagagcaactttagaaggtcatccaactcagaggtaataataattt 12003441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University