View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_low_11 (Length: 526)
Name: NF1084_low_11
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 99 - 514
Target Start/End: Complemental strand, 45349697 - 45349287
Alignment:
| Q |
99 |
ttatctctctgtgttttcctgtaatgtaattgatttatctctgtttcgtaactttcagtagcaaaaaactcgtataccatataatcgtac--tatcagat |
196 |
Q |
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| T |
45349697 |
ttatctctctgtgttttcctgtaatgtaattgatttatctctgtttcgtaactttcagtagcaaaaaactcgtataccatataatcgtactatatcagac |
45349598 |
T |
|
| Q |
197 |
gagcatttcaataggtgcagtccaccaaaccaacaataatcataaaatgttcattgctcctctnnnnnnntataaaattgtcattggtttttaggttcat |
296 |
Q |
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| T |
45349597 |
gagcatttcaataggtgcagtccaccaaaccaacaataatcataaaatgttcattgctcctctaaaaaaatataaaattgtcattgctttttaggttcat |
45349498 |
T |
|
| Q |
297 |
gtgagtattttcacattcgatttacaagtgggatattattaattacacattgcatacttacaaaacaagtcacttaatactattgatattgcattttcaa |
396 |
Q |
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| T |
45349497 |
gtgagtattttcacattcgatttacaagtggga---tattaattacacattgcaaacatacaaaacaagtcacttaatactattgatattgcattttcaa |
45349401 |
T |
|
| Q |
397 |
atcaatatatagctcctactcatgagtgtggtttcgaagaacnnnnnnntgaaaacccaataaccttcttaaagcttctacaagtacaattatcaatgtt |
496 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45349400 |
atca----atagctcctactcatgagtgtggtttcgaagaacaaaaaaatgaaaaccccataaccttcttaaagcttctacaagtacaattatcaatgtt |
45349305 |
T |
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| Q |
497 |
ataatcttcttcaatatt |
514 |
Q |
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| T |
45349304 |
ataatcttcttcaatatt |
45349287 |
T |
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