View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1084_low_112 (Length: 233)

Name: NF1084_low_112
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1084_low_112
NF1084_low_112
[»] chr4 (15 HSPs)
chr4 (5-196)||(5563241-5563432)
chr4 (7-182)||(5557470-5557645)
chr4 (8-196)||(5603939-5604127)
chr4 (6-198)||(5612055-5612247)
chr4 (5-198)||(3747436-3747629)
chr4 (5-182)||(5551705-5551882)
chr4 (5-198)||(5856590-5856783)
chr4 (5-198)||(5887763-5887956)
chr4 (5-196)||(5890823-5891014)
chr4 (5-182)||(5849541-5849718)
chr4 (5-182)||(5896614-5896791)
chr4 (55-182)||(5854566-5854693)
chr4 (59-176)||(5572752-5572869)
chr4 (59-176)||(5584959-5585076)
chr4 (36-175)||(253315-253452)
[»] chr8 (1 HSPs)
chr8 (7-196)||(1481681-1481870)
[»] chr2 (1 HSPs)
chr2 (61-121)||(43277546-43277606)


Alignment Details
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 5563432 - 5563241
Alignment:
Q  5 agccattgatttctcatccaattgctttgaaggaccaataccagaggtgttgatgaacttcaaagcactttatgttctcaacttttcaaacaacgatctc 104  Q
    |||||||||||| |||||||||   |||||||||||| ||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||| | ||||    
T  5563432 agccattgatttatcatccaatcattttgaaggaccactaccaaatgtgctgatggacttcaaagcactttatgttctcaacttttcaaacaatgctctc 5563333  T
Q  105 tctggtgaaattccatcgactattgggaacctgaaacagttggagtccttggacctttcatataactctttggttggtacaattcctatgca 196  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |||||||| |||||||||  |||||| ||||    
T  5563332 tctggtgaaattccatcaactatcgggaacctgaaacagttggagtccttggacctctcaaataactctctggttggtaagattcctgtgca 5563241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 7 - 182
Target Start/End: Complemental strand, 5557645 - 5557470
Alignment:
Q  7 ccattgatttctcatccaattgctttgaaggaccaataccagaggtgttgatgaacttcaaagcactttatgttctcaacttttcaaacaacgatctctc 106  Q
    ||||||| ||||||||||||   |||||||||||||||||||| ||| | ||| ||||||||||| |  |||||||||||||||||||||| | ||||||    
T  5557645 ccattgacttctcatccaatcattttgaaggaccaataccagatgtgctaatggacttcaaagcaatccatgttctcaacttttcaaacaatgctctctc 5557546  T
Q  107 tggtgaaattccatcgactattgggaacctgaaacagttggagtccttggacctttcatataactctttggttggt 182  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||    
T  5557545 tggtgaaatcccatcaactattgggaacctgaaacagttggagtccttggacctctcaaataactcattggttggt 5557470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 5604127 - 5603939
Alignment:
Q  8 cattgatttctcatccaattgctttgaaggaccaataccagaggtgttgatgaacttcaaagcactttatgttctcaacttttcaaacaacgatctctct 107  Q
    |||||||||||||||||| |  ||||||||||||||||||  |||| | ||| ||||||||||||||||||||||||||||||||||||| | ||||| |    
T  5604127 cattgatttctcatccaactcttttgaaggaccaataccaatggtggtaatggacttcaaagcactttatgttctcaacttttcaaacaatggtctctat 5604028  T
Q  108 ggtgaaattccatcgactattgggaacctgaaacagttggagtccttggacctttcatataactctttggttggtacaattcctatgca 196  Q
    |||||||| ||||| ||| ||||||||||||||||||||||||| |||||||| ||| |||||| | ||||||||  ||||||| ||||    
T  5604027 ggtgaaatcccatcaactgttgggaacctgaaacagttggagtctttggacctctcaaataactttctggttggtggaattcctgtgca 5603939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 6 - 198
Target Start/End: Complemental strand, 5612247 - 5612055
Alignment:
Q  6 gccattgatttctcatccaattgctttgaaggaccaataccagaggtgttgatgaacttcaaagcactttatgttctcaacttttcaaacaacgatctct 105  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| | ||||||| ||||||||| |  |||||||||||||||||||||| | | |||    
T  5612247 gccattgatttctcatccaatcactttgaaggaccaataccagaggggctgatgaaattcaaagcaatccatgttctcaacttttcaaacaatgctttct 5612148  T
Q  106 ctggtgaaattccatcgactattgggaacctgaaacagttggagtccttggacctttcatataactctttggttggtacaattcctatgcaac 198  Q
    || ||||||| ||||| ||||||||||||||||||||||| |||||||||||| | ||| | ||||| |||||||||  ||||||| ||||||    
T  5612147 cttgtgaaatcccatcaactattgggaacctgaaacagttagagtccttggacttctcaaacaactccttggttggtgaaattcctctgcaac 5612055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 3747629 - 3747436
Alignment:
Q  5 agccattgatttctcatccaattgctttgaaggaccaataccagaggtgttgatgaacttcaaagcactttatgttctcaacttttcaaacaacgatctc 104  Q
    |||||||||||||||||| |||   |||||||||||||| ||  ||||| | ||||| ||||||||| |  ||||||||||||||||||||||| |||||    
T  3747629 agccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaacaacaatctc 3747530  T
Q  105 tctggtgaaattccatcgactattgggaacctgaaacagttggagtccttggacctttcatataactctttggttggtacaattcctatgcaac 198  Q
    ||||||||||||||||| ||||| || ||| |||||||||| |||||||||||||| ||| ||||||| |||||||||  |||||| |||||||    
T  3747529 tctggtgaaattccatcaactataggaaacttgaaacagttagagtccttggacctctcaaataactcattggttggtgaaattcccatgcaac 3747436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 5 - 182
Target Start/End: Complemental strand, 5551882 - 5551705
Alignment:
Q  5 agccattgatttctcatccaattgctttgaaggaccaataccagaggtgttgatgaacttcaaagcactttatgttctcaacttttcaaacaacgatctc 104  Q
    ||||||||||||||||||||||   |||||||||||||||||| ||||  ||||| | ||||||||| |  |||||||||||||||| ||||| | | ||    
T  5551882 agccattgatttctcatccaatcattttgaaggaccaataccacaggttctgatggaattcaaagcaatccatgttctcaacttttcgaacaatggtatc 5551783  T
Q  105 tctggtgaaattccatcgactattgggaacctgaaacagttggagtccttggacctttcatataactctttggttggt 182  Q
    || |||||||| ||||| ||||||||||||||||||||||| ||||| || ||||| ||| ||||||| |||||||||    
T  5551782 tccggtgaaatcccatcaactattgggaacctgaaacagttagagtcattagacctctcaaataactccttggttggt 5551705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 5856783 - 5856590
Alignment:
Q  5 agccattgatttctcatccaattgctttgaaggaccaataccagaggtgttgatgaacttcaaagcactttatgttctcaacttttcaaacaacgatctc 104  Q
    |||||||||||| |||||||||   ||||||||   ||||||||| | |  ||||||||||||||||||| ||||||||||||||||||||||   ||||    
T  5856783 agccattgatttatcatccaatcattttgaaggtaaaataccagaagcgacgatgaacttcaaagcacttcatgttctcaacttttcaaacaattgtctc 5856684  T
Q  105 tctggtgaaattccatcgactattgggaacctgaaacagttggagtccttggacctttcatataactctttggttggtacaattcctatgcaac 198  Q
    || |||||||| |||||  ||||||| ||| |||||||||||||||| || ||||| ||| ||||||||||| |||||  |||||| |||||||    
T  5856683 tcaggtgaaatcccatcttctattggaaacttgaaacagttggagtcattagacctctcaaataactctttgattggtgaaattcccatgcaac 5856590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 5887763 - 5887956
Alignment:
Q  5 agccattgatttctcatccaattgctttgaaggaccaataccagaggtgttgatgaacttcaaagcactttatgttctcaacttttcaaacaacgatctc 104  Q
    ||||||||||||||||||||||   |||||||||| ||||||||| ||| | ||||| || ||||||||   |||| |||||||||||||||| ||| |     
T  5887763 agccattgatttctcatccaatcattttgaaggacaaataccagacgtgctaatgaaatttaaagcactccttgttttcaacttttcaaacaatgatttt 5887862  T
Q  105 tctggtgaaattccatcgactattgggaacctgaaacagttggagtccttggacctttcatataactctttggttggtacaattcctatgcaac 198  Q
    ||||||||||| ||||  |||||||  |||||||||||||| |||||||||||||| ||| | ||||| |||||||||  ||||||| ||||||    
T  5887863 tctggtgaaatcccattaactattgcaaacctgaaacagttagagtccttggacctctcaaacaactccttggttggtgaaattcctctgcaac 5887956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 196
Target Start/End: Original strand, 5890823 - 5891014
Alignment:
Q  5 agccattgatttctcatccaattgctttgaaggaccaataccagaggtgttgatgaacttcaaagcactttatgttctcaacttttcaaacaacgatctc 104  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||  | ||||| || |||||| |  |||||||||||||||||||||| | | |     
T  5890823 agccattgatttctcatccaattattttgaaggaccaataccagaggtcctaatgaaatttaaagcagtccatgttctcaacttttcaaacaatgctttt 5890922  T
Q  105 tctggtgaaattccatcgactattgggaacctgaaacagttggagtccttggacctttcatataactctttggttggtacaattcctatgca 196  Q
    ||||||||||| || || |||||||  | |||  ||||| | |||||||||||||| ||| |||||||||||||||||  ||||||| ||||    
T  5890923 tctggtgaaatcccctccactattgcaagcctagaacagatagagtccttggacctctcaaataactctttggttggtgaaattcctgtgca 5891014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 182
Target Start/End: Original strand, 5849541 - 5849718
Alignment:
Q  5 agccattgatttctcatccaattgctttgaaggaccaataccagaggtgttgatgaacttcaaagcactttatgttctcaacttttcaaacaacgatctc 104  Q
    ||||||||||||||||||||||   || |||||||||||||||||| || | ||||| || || ||| |  |||||||||||||||||||||| | | |     
T  5849541 agccattgatttctcatccaatcatttcgaaggaccaataccagagttgctaatgaaatttaaggcaatccatgttctcaacttttcaaacaatgttttt 5849640  T
Q  105 tctggtgaaattccatcgactattgggaacctgaaacagttggagtccttggacctttcatataactctttggttggt 182  Q
    ||||||||||| ||||| |||||||  ||| |||||||| | |||||||||||||| ||| |||||||||||||||||    
T  5849641 tctggtgaaatcccatcaactattgaaaacttgaaacagctagagtccttggacctctcaaataactctttggttggt 5849718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 182
Target Start/End: Original strand, 5896614 - 5896791
Alignment:
Q  5 agccattgatttctcatccaattgctttgaaggaccaataccagaggtgttgatgaacttcaaagcactttatgttctcaacttttcaaacaacgatctc 104  Q
    |||||||||||||||||| |||   || ||||||||||||||| | ||||||||| | ||||||||| |  || ||||||||||||| ||||| | | ||    
T  5896614 agccattgatttctcatcaaatcatttcgaaggaccaataccacatgtgttgatggaattcaaagcaatccattttctcaacttttcgaacaatggtttc 5896713  T
Q  105 tctggtgaaattccatcgactattgggaacctgaaacagttggagtccttggacctttcatataactctttggttggt 182  Q
    | ||||||||||||||| |||||||  |||||||||||  | |||||||||||||| ||| |||||||||||||||||    
T  5896714 tatggtgaaattccatcaactattgcaaacctgaaacaactagagtccttggacctctcaaataactctttggttggt 5896791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 55 - 182
Target Start/End: Original strand, 5854566 - 5854693
Alignment:
Q  55 tgatgaacttcaaagcactttatgttctcaacttttcaaacaacgatctctctggtgaaattccatcgactattgggaacctgaaacagttggagtcctt 154  Q
    ||||||| ||||||||| |  |||||||||||||||||||||| | | ||||||||||||| ||||| ||||| ||||||||||||||||| ||||| ||    
T  5854566 tgatgaaattcaaagcagtccatgttctcaacttttcaaacaatgctttctctggtgaaatcccatcaactatcgggaacctgaaacagttagagtcatt 5854665  T
Q  155 ggacctttcatataactctttggttggt 182  Q
     ||||| ||| ||||||| |||||||||    
T  5854666 agacctctcaaataactccttggttggt 5854693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 176
Target Start/End: Original strand, 5572752 - 5572869
Alignment:
Q  59 gaacttcaaagcactttatgttctcaacttttcaaacaacgatctctctggtgaaattccatcgactattgggaacctgaaacagttggagtccttggac 158  Q
    ||||||||||||||||||  |||||||| |||||||||||  |||||| ||| |||| |||||  | || |||||| ||||||| ||||||||||| |||    
T  5572752 gaacttcaaagcactttacattctcaacatttcaaacaaccgtctctcaggtaaaatcccatcttccatagggaacttgaaacaattggagtccttagac 5572851  T
Q  159 ctttcatataactctttg 176  Q
    || ||| ||||| |||||    
T  5572852 ctctcaaataacactttg 5572869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 176
Target Start/End: Original strand, 5584959 - 5585076
Alignment:
Q  59 gaacttcaaagcactttatgttctcaacttttcaaacaacgatctctctggtgaaattccatcgactattgggaacctgaaacagttggagtccttggac 158  Q
    ||||||||||||||||||  |||||||| |||||||||||  |||||| ||| |||| |||||  | || |||||| ||||||| ||||||||||| |||    
T  5584959 gaacttcaaagcactttacattctcaacatttcaaacaaccgtctctcaggtaaaatcccatcttccatagggaacttgaaacaattggagtccttagac 5585058  T
Q  159 ctttcatataactctttg 176  Q
    || ||| ||||| |||||    
T  5585059 ctctcaaataacactttg 5585076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 175
Target Start/End: Original strand, 253315 - 253452
Alignment:
Q  36 ggaccaataccagaggtgttgatgaacttcaaagcactttatgttctcaacttttcaaacaacgatctctctggtgaaattccatcgactattgggaacc 135  Q
    ||||| ||||||||| || | ||| ||||||||| |||||||| |||||||||||||||||| |   |||| || ||||| || ||  |||| ||||||     
T  253315 ggaccgataccagagatgctaatggacttcaaagaactttatgctctcaacttttcaaacaatg--gtctcaggcgaaatcccgtcttctatagggaact 253412  T
Q  136 tgaaacagttggagtccttggacctttcatataactcttt 175  Q
    ||||||| || |||||||| ||||| ||| ||||||||||    
T  253413 tgaaacaattagagtccttagacctctcaaataactcttt 253452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 1481870 - 1481681
Alignment:
Q  7 ccattgatttctcatccaattgctttgaaggaccaataccagaggtgttgatgaacttcaaagcactttatgttctcaacttttcaaacaacgatctctc 106  Q
    ||||||||||||||||||||  ||||||||||   ||||||||||   | ||| |  | ||||||||  |||||||||||||||||||||| | | ||||    
T  1481870 ccattgatttctcatccaatcactttgaaggattgataccagaggatctaatggatctgaaagcactccatgttctcaacttttcaaacaatgctttctc 1481771  T
Q  107 tggtgaaattccatcgactattgggaacctgaaacagttggagtccttggacctttcatataactctttggttggtacaattcctatgca 196  Q
     |||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||| ||||||||||| | |||| ||||||| ||||    
T  1481770 cggtgaaatcccatcgactattgggaacctgaaacagttagagtccttagacctctcaaataactctttgttcggtaaaattcctgtgca 1481681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 43277606 - 43277546
Alignment:
Q  61 acttcaaagcactttatgttctcaacttttcaaacaacgatctctctggtgaaattccatc 121  Q
    ||||||||||||| |||||||||||||||||||||||  || |||| |||||||| |||||    
T  43277606 acttcaaagcactatatgttctcaacttttcaaacaatcatttctcaggtgaaatcccatc 43277546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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