View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_low_124 (Length: 202)
Name: NF1084_low_124
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_124 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 7e-51; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 29990801 - 29990906
Alignment:
| Q |
1 |
cttcaaaagttgagaagtcgggtcctattagaacagaggagttgggtattttggttaacactttgaaaaaagcttctttggtaggtgaggttgtgaatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29990801 |
cttcaaaagttgagaagtcgggtcctattagaacagaggagttgggtattttggttaacactttgaaaaaagcttctttggtaggtgaggttgtgaatgt |
29990900 |
T |
|
| Q |
101 |
tagtga |
106 |
Q |
| |
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||||| |
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| T |
29990901 |
cagtga |
29990906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 29999505 - 29999610
Alignment:
| Q |
1 |
cttcaaaagttgagaagtcgggtcctattagaacagaggagttgggtattttggttaacactttgaaaaaagcttctttggtaggtgaggttgtgaatgt |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29999505 |
cttcaaaagttgagaagtcgggtcctattagaaaagaggagttgggtgttttggttaacactttgaagaaagcttctttggtaggtgaggttgtgaatgt |
29999604 |
T |
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| Q |
101 |
tagtga |
106 |
Q |
| |
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|||||| |
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| T |
29999605 |
tagtga |
29999610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 30045211 - 30045106
Alignment:
| Q |
1 |
cttcaaaagttgagaagtcgggtcctattagaacagaggagttgggtattttggttaacactttgaaaaaagcttctttggtaggtgaggttgtgaatgt |
100 |
Q |
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||||||||||||||| ||| ||||||||||||| |||||||||| |||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| |
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| T |
30045211 |
cttcaaaagttgagatgtctggtcctattagaaaagaggagttgagtattttggttaacactttgaagaaagctgctttggttggtgaggttgtgaatgt |
30045112 |
T |
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| Q |
101 |
tagtga |
106 |
Q |
| |
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|||||| |
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| T |
30045111 |
tagtga |
30045106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 30071041 - 30070936
Alignment:
| Q |
1 |
cttcaaaagttgagaagtcgggtcctattagaacagaggagttgggtattttggttaacactttgaaaaaagcttctttggtaggtgaggttgtgaatgt |
100 |
Q |
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|
||||||||||||||| ||| ||||||||||||| |||||||||| |||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| |
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| T |
30071041 |
cttcaaaagttgagatgtctggtcctattagaaaagaggagttgagtattttggttaacactttgaagaaagctgctttggttggtgaggttgtgaatgt |
30070942 |
T |
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| Q |
101 |
tagtga |
106 |
Q |
| |
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|||||| |
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| T |
30070941 |
tagtga |
30070936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 29943970 - 29944075
Alignment:
| Q |
1 |
cttcaaaagttgagaagtcgggtcctattagaacagaggagttgggtattttggttaacactttgaaaaaagcttctttggtaggtgaggttgtgaatgt |
100 |
Q |
| |
|
|||| |||||||||| || ||||||||||| | ||| |||||| | |||||||||| ||||| | |||||| || ||| ||||||||||||||||| |
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| T |
29943970 |
cttcgaaagttgagatgtttggtcctattaggaaggagaagttggatgttttggttaaatctttggagaaagctgctctggagggtgaggttgtgaatgt |
29944069 |
T |
|
| Q |
101 |
tagtga |
106 |
Q |
| |
|
|||||| |
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|
| T |
29944070 |
tagtga |
29944075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 29963196 - 29963301
Alignment:
| Q |
1 |
cttcaaaagttgagaagtcgggtcctattagaacagaggagttgggtattttggttaacactttgaaaaaagcttctttggtaggtgaggttgtgaatgt |
100 |
Q |
| |
|
||||||||||||||| || ||||||||||| | ||||||||| | |||||||||| | || | |||| | |||||||||||||||||||||||| |
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| T |
29963196 |
cttcaaaagttgagatgtttggtcctattaggaagaaggagttggatgttttggttaagtcattagagaaagttgttttggtaggtgaggttgtgaatgt |
29963295 |
T |
|
| Q |
101 |
tagtga |
106 |
Q |
| |
|
|||||| |
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|
| T |
29963296 |
tagtga |
29963301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 30005943 - 30006048
Alignment:
| Q |
1 |
cttcaaaagttgagaagtcgggtcctattagaacagaggagttgggtattttggttaacactttgaaaaaagcttctttggtaggtgaggttgtgaatgt |
100 |
Q |
| |
|
||||||||||||||| || ||||||||||| | ||| |||||| | ||||||||| ||||| | |||||| | |||| ||||||||||||||||| |
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| T |
30005943 |
cttcaaaagttgagatgtttggtcctattaggaaggagaagttggatgttttggttatatctttggagaaagctgccttggagggtgaggttgtgaatgt |
30006042 |
T |
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| Q |
101 |
tagtga |
106 |
Q |
| |
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|||||| |
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| T |
30006043 |
tagtga |
30006048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 30011602 - 30011497
Alignment:
| Q |
1 |
cttcaaaagttgagaagtcgggtcctattagaacagaggagttgggtattttggttaacactttgaaaaaagcttctttggtaggtgaggttgtgaatgt |
100 |
Q |
| |
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||||||||||||||| || ||||||||||| | ||||||||| | |||||||||| | || | |||| | |||||||||||||||||||||||| |
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| T |
30011602 |
cttcaaaagttgagatgtttggtcctattaggaagaaggagttggatgttttggttaagtcattagagaaagttgttttggtaggtgaggttgtgaatgt |
30011503 |
T |
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| Q |
101 |
tagtga |
106 |
Q |
| |
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|||||| |
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|
| T |
30011502 |
tagtga |
30011497 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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