View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_low_125 (Length: 201)
Name: NF1084_low_125
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_125 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 1e-64; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 29990825 - 29990697
Alignment:
| Q |
1 |
ggacccgacttctcaacttttgaagcactaagaagtttcaaagtgcacagtttctttacactacgccaataagggtcgtacttagaaaacgccaaccctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29990825 |
ggacccgacttctcaacttttgaagcactaagaagtttcaaagtgcagagtttctttacactacgccaataagggtcgtacttagaaaacgccaaccctt |
29990726 |
T |
|
| Q |
101 |
tgcaaccataagatatgatctctgctcct |
129 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
29990725 |
tgcaaccataagatatgatctctgctcct |
29990697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 29943984 - 29943866
Alignment:
| Q |
11 |
tctcaacttttgaagcactaagaagtttcaaagtgcacagtttctttacactacgccaataagggtcgtacttagaaaacgccaaccctttgcaaccata |
110 |
Q |
| |
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|||||||||| ||||||||||||||||| |||| || ||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29943984 |
tctcaactttcgaagcactaagaagttttgaagtacaaagttttctcacactacgccaataagagtcgtacttagaaaacgccaaccctttgcaaccata |
29943885 |
T |
|
| Q |
111 |
agatatgatctctgctcct |
129 |
Q |
| |
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||| ||||||| ||||||| |
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| T |
29943884 |
agacatgatctgtgctcct |
29943866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 29963210 - 29963110
Alignment:
| Q |
11 |
tctcaacttttgaagcactaagaagtttcaaagtgcacagtttctttacactacgccaataagggtcgtacttagaaaacgccaaccctttgcaaccata |
110 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| |||||| |||||||||||| ||||||| |
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| T |
29963210 |
tctcaacttttgaagcactaagaagtttcaaagtgcaaagtttctttacactacgccaataaggaccatactcagaaaaagccaaccctttggaaccata |
29963111 |
T |
|
| Q |
111 |
a |
111 |
Q |
| |
|
| |
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| T |
29963110 |
a |
29963110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 30011588 - 30011688
Alignment:
| Q |
11 |
tctcaacttttgaagcactaagaagtttcaaagtgcacagtttctttacactacgccaataagggtcgtacttagaaaacgccaaccctttgcaaccata |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| |||||| |||||||||||| ||||||| |
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| T |
30011588 |
tctcaacttttgaagcactaagaagtttcaaagtgcaaagtttctttacactacgccaataaggaccatactcagaaaaagccaaccctttggaaccata |
30011687 |
T |
|
| Q |
111 |
a |
111 |
Q |
| |
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| |
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|
| T |
30011688 |
a |
30011688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 29952105 - 29952006
Alignment:
| Q |
11 |
tctcaacttttgaagcactaagaagtttcaaagtgcacagtttctttacactacgccaataagggtcgtacttagaaaacgccaaccctttgcaaccata |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||| | ||||||||||||||||| | ||||||||||| |||||||||||| ||||||| |
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| T |
29952105 |
tctcaacttttgaagcactaagaagttttaaagtgcaaagtttcctcacactacgccaataaggaccatacttagaaaaagccaaccctttggaaccata |
29952006 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 30045187 - 30045304
Alignment:
| Q |
1 |
ggacccgacttctcaacttttgaagcactaagaagtttcaaagtgcacagtttctttacactacgccaataagggtcgtacttagaaaacgccaaccctt |
100 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||||||||| | |||| | |||| |||| ||||| |
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| T |
30045187 |
ggaccagacatctcaacttttgaagcactaagaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcacaaaaagccatccctt |
30045286 |
T |
|
| Q |
101 |
tgcaaccataagatatga |
118 |
Q |
| |
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|| |||||||||| |||| |
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|
| T |
30045287 |
tggaaccataagacatga |
30045304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 29999529 - 29999401
Alignment:
| Q |
1 |
ggacccgacttctcaacttttgaagcactaagaagtttcaaagtgcacagtttctttacactacgccaataagggtcgtacttagaaaacgccaaccctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | |||| | | ||| ||||||||||| | |||| |||||| | |||||||| |
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| T |
29999529 |
ggacccgacttctcaacttttgaagcactaagaagtttcaaagtgcaaaatttcctcatactgcgccaataaggaccatactcagaaaaaggcaaccctt |
29999430 |
T |
|
| Q |
101 |
tgcaaccataagatatgatctctgctcct |
129 |
Q |
| |
|
| ||||||| || |||| ||||| |||| |
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| T |
29999429 |
tagaaccataggacatgagctctgatcct |
29999401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 30005957 - 30005850
Alignment:
| Q |
11 |
tctcaacttttgaagcactaagaagtttcaaagtgcacagtttctttacactacgccaataagggtcgtacttagaaaacgccaaccctttgcaaccata |
110 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| | |||| | ||||||||||||||||| | |||| |||||| |||| ||||||| ||||||| |
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| T |
30005957 |
tctcaacttttgaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaaccata |
30005858 |
T |
|
| Q |
111 |
agatatga |
118 |
Q |
| |
|
||| |||| |
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|
| T |
30005857 |
agacatga |
30005850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 30071017 - 30071090
Alignment:
| Q |
1 |
ggacccgacttctcaacttttgaagcactaagaagtttcaaagtgcacagtttctttacactacgccaataagg |
74 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||||||||| |
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| T |
30071017 |
ggaccagacatctcaacttttgaagcactaagaagtttcaaagtgcaaaatttcctcacactacgccaataagg |
30071090 |
T |
|
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