View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_low_13 (Length: 512)
Name: NF1084_low_13
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 45 - 502
Target Start/End: Original strand, 28506853 - 28507308
Alignment:
| Q |
45 |
aaaggagaaaggtacacttataaggtggtagcatcaatcatagtcgacatcacaatcagtgtttcaaaagacttgtcaggtggctcaacaagtcattaac |
144 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
28506853 |
aaaggagaaaggtac--ttataaggtggtagcatcaatcatagtcgacatcacaatcagtgtttcaaaagacttgtaaggtggctcaacaagttattaac |
28506950 |
T |
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| Q |
145 |
atatttatcttgtctttccatattgacaaacaagtccttcatgttcttaatattttctctatagatcattccctcttcttcaaccacaatcagcctaatt |
244 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28506951 |
atatttatcttgtctttcaatattgacaaacaagtccttcatgttcttaatattttctctatagatcattccctcttcttcaaccacaatcagcctaatt |
28507050 |
T |
|
| Q |
245 |
gagtgagcaactgaatcacttgtgaaagacccatctctctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcatttattcctt |
344 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28507051 |
gagtgagcaaccgaatcacttgtgaaagacccatctctctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcatttattcctt |
28507150 |
T |
|
| Q |
345 |
gatctgcaagatacgtcaacaacacaagtggcttctcattctgaacggcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactgctat |
444 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28507151 |
gatctgaaagatacgtcaacaacacaagtggcttctcatgttgaactgcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactgccat |
28507250 |
T |
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| Q |
445 |
gtgacctaatatcttcatttgtgggacccaatcagtgcataccactccacgtcctttg |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28507251 |
gtgacctaatatcttcatttgtgggacccaatcagtgcataccactccacgtcctttg |
28507308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 141 - 502
Target Start/End: Original strand, 28494401 - 28494762
Alignment:
| Q |
141 |
taacatatttatcttgtctttccatattgacaaacaagtccttcatgttcttaatattttctctatagatcattccctcttcttcaaccacaatcagcct |
240 |
Q |
| |
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|||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| || ||||||||| |||||||||||||||||| || | ||| |
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| T |
28494401 |
taacatatctatcttgtctttcaggattgacaaacaaatccttcatgttcttaatattatccctatagatccttccctcttcttcaaccataactaacct |
28494500 |
T |
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| Q |
241 |
aattgagtgagcaactgaatcacttgtgaaagacccatctctctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcatttatt |
340 |
Q |
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||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| |
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| T |
28494501 |
aatcgagtgagccaccatatcacttgtgaaagacccatctctctcatctctaggcactgagtatcccatcttcttttcttccaacattcttgcatttatt |
28494600 |
T |
|
| Q |
341 |
ccttgatctgcaagatacgtcaacaacacaagtggcttctcattctgaacggcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactg |
440 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28494601 |
ccttgatctgcaagacacgttaacaacacaagtggcttctcatgttgaactgcttctaccaccgatgtccaccctgcatgagtcaagaatccaccaactg |
28494700 |
T |
|
| Q |
441 |
ctatgtgacctaatatcttcatttgtgggacccaatcagtgcataccactccacgtcctttg |
502 |
Q |
| |
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| | ||| | ||||||||||||||||||| |||| ||||||||||||||||||||| ||||| |
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| T |
28494701 |
ccacgtggcttaatatcttcatttgtggggcccattcagtgcataccactccacgtactttg |
28494762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 145 - 502
Target Start/End: Original strand, 28491086 - 28491443
Alignment:
| Q |
145 |
atatttatcttgtctttccatattgacaaacaagtccttcatgttcttaatattttctctatagatcattccctcttcttcaaccacaatcagcctaatt |
244 |
Q |
| |
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|||| ||||||||||||| |||||||||||||||||||||| | ||||||||||| ||||| ||| | || |||||||||| || || || |||||| |
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| T |
28491086 |
atatctatcttgtctttcaatattgacaaacaagtccttcacctctttaatattttccctatatatcctcccttcttcttcaagcataactagtctaatt |
28491185 |
T |
|
| Q |
245 |
gagtgagcaactgaatcacttgtgaaagacccatctctctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcatttattcctt |
344 |
Q |
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| | |||| ||||| ||||||||||| ||||||||| ||||||||||||||| | ||| ||||||||||||| |||||||| | ||||||||||| | |
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| T |
28491186 |
gtgcgagccactgagtcacttgtgaatgacccatcttgctcatctctaggcaccgtgtatgccatcttcttttcttccaacaccttcgcatttattccct |
28491285 |
T |
|
| Q |
345 |
gatctgcaagatacgtcaacaacacaagtggcttctcattctgaacggcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactgctat |
444 |
Q |
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| ||| ||||| | |||| |||||||||||||||||| || ||||| || || ||||| |||||||| ||||| |||| ||||| |||||| ||| || |
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| T |
28491286 |
ggtctacaagaaatgtcatcaacacaagtggcttctcgttttgaactgcttccaccactgatgtccaacctgcgtgagaaaagaacacaccaattgccat |
28491385 |
T |
|
| Q |
445 |
gtgacctaatatcttcatttgtgggacccaatcagtgcataccactccacgtcctttg |
502 |
Q |
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||| ||||||||||||||||| || |||||||||||||||| ||||| || |||||| |
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| T |
28491386 |
gtgccctaatatcttcatttgcggagcccaatcagtgcatacaactccgcgccctttg |
28491443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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