View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1084_low_16 (Length: 469)

Name: NF1084_low_16
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1084_low_16
NF1084_low_16
[»] chr8 (10 HSPs)
chr8 (30-280)||(465645-465898)
chr8 (287-462)||(465419-465596)
chr8 (325-402)||(43384230-43384307)
chr8 (30-73)||(1204940-1204983)
chr8 (30-73)||(10555336-10555379)
chr8 (30-73)||(15009255-15009298)
chr8 (30-73)||(23854565-23854608)
chr8 (30-73)||(34894980-34895023)
chr8 (32-71)||(34952167-34952206)
chr8 (30-73)||(37970653-37970696)
[»] chr2 (9 HSPs)
chr2 (282-379)||(19952276-19952375)
chr2 (32-73)||(18494416-18494457)
chr2 (30-73)||(26357591-26357634)
chr2 (30-73)||(33660514-33660557)
chr2 (32-73)||(19313866-19313907)
chr2 (32-73)||(41465523-41465564)
chr2 (41-73)||(5881548-5881580)
chr2 (34-74)||(33902081-33902121)
chr2 (30-74)||(35958922-35958966)
[»] chr3 (9 HSPs)
chr3 (282-371)||(37382703-37382794)
chr3 (30-75)||(2613893-2613938)
chr3 (20-73)||(29163852-29163905)
chr3 (30-73)||(29099360-29099403)
chr3 (282-350)||(43136142-43136214)
chr3 (30-73)||(46297890-46297933)
chr3 (30-73)||(35844331-35844374)
chr3 (30-73)||(44891512-44891554)
chr3 (32-72)||(11357495-11357535)
[»] scaffold0311 (1 HSPs)
scaffold0311 (328-395)||(367-434)
[»] chr7 (10 HSPs)
chr7 (291-386)||(36906726-36906820)
chr7 (30-73)||(17842715-17842758)
chr7 (30-73)||(37109861-37109904)
chr7 (32-73)||(12165741-12165782)
chr7 (30-73)||(23111179-23111222)
chr7 (30-73)||(24211730-24211773)
chr7 (30-73)||(38258534-38258577)
chr7 (32-74)||(31520854-31520896)
chr7 (32-73)||(8299204-8299245)
chr7 (30-75)||(22687226-22687271)
[»] chr5 (13 HSPs)
chr5 (30-73)||(7693244-7693287)
chr5 (30-74)||(26317802-26317846)
chr5 (30-73)||(9200247-9200290)
chr5 (309-379)||(1280039-1280111)
chr5 (32-73)||(19119873-19119914)
chr5 (30-73)||(5112431-5112474)
chr5 (30-73)||(12910364-12910407)
chr5 (30-73)||(31705729-31705772)
chr5 (30-73)||(32563163-32563206)
chr5 (32-73)||(1429265-1429306)
chr5 (37-74)||(5748441-5748478)
chr5 (32-73)||(8742007-8742048)
chr5 (32-73)||(40133399-40133440)
[»] chr1 (9 HSPs)
chr1 (290-378)||(26273371-26273461)
chr1 (30-73)||(18422661-18422704)
chr1 (30-73)||(1547297-1547340)
chr1 (30-73)||(2959758-2959801)
chr1 (30-73)||(15752039-15752082)
chr1 (30-73)||(37451296-37451339)
chr1 (32-73)||(16415655-16415696)
chr1 (32-73)||(21289675-21289716)
chr1 (31-71)||(7079198-7079238)
[»] chr4 (14 HSPs)
chr4 (30-74)||(53124300-53124344)
chr4 (30-73)||(4598007-4598050)
chr4 (30-73)||(39397932-39397975)
chr4 (30-73)||(4396340-4396383)
chr4 (30-73)||(32912734-32912777)
chr4 (30-73)||(34361645-34361688)
chr4 (30-73)||(35021189-35021232)
chr4 (282-352)||(38819271-38819342)
chr4 (30-73)||(52516611-52516654)
chr4 (35-73)||(30002783-30002821)
chr4 (31-73)||(37775683-37775725)
chr4 (30-71)||(7703533-7703574)
chr4 (32-73)||(47253763-47253804)
chr4 (33-73)||(51204593-51204633)
[»] chr6 (3 HSPs)
chr6 (30-73)||(4318950-4318993)
chr6 (30-73)||(5627405-5627448)
chr6 (31-73)||(8513247-8513289)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 30 - 280
Target Start/End: Complemental strand, 465898 - 465645
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca---taaattttttctaataatccaaggtaggtctagtgcaaattaaggtagaatta 126  Q
    ||||| ||||||||||||||||||||||||||||||||||||||   |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  465898 gttatcgtgttaacttcaccacaaaagtcattttaatgacttcaccataaaatttttctaataatccaaggtaggtctagtgcaaattaaggtagaatta 465799  T
Q  127 ttaaattttacnnnnnnnnataaggaaattattaaatttcacttaaaaggtaagaactaaaaaatattacatctgttatcaattttctattatttaaaaa 226  Q
    |||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  465798 ttaaattttacttttttttataaggaaattattaaatttcacttaaaaggtaagaactaaaaaatattacatctgttatcaattttctattattaaaaaa 465699  T
Q  227 ggtaagagttcattttcgatcatttttaaaggtatgtattaaataagttctcac 280  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  465698 ggtaagagttcattttcgatcatttttaaaggtatgtattaaacaagttctcac 465645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 287 - 462
Target Start/End: Complemental strand, 465596 - 465419
Alignment:
Q  287 aaatcaattgattctccaatttttccttctttccttgctttagggttttaaaattgagaattgttaattgaaaatttggatgtgtaagttataggaataa 386  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  465596 aaatcaattgatttttcaatttttccttctttccttgctttagggttttaaaattgagaattgttaattgaaaaattggatgtgtaagttataggaataa 465497  T
Q  387 aacatgatat--tgtgaannnnnnnnncttcaagattttgttttagttttactattggttgtttatttgtctgtggtg 462  Q
    ||||||||||  |||||          ||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  465496 aacatgatattgtgtgattttttttttcttcaggattttgttttagttttactattggttgtttatttgtttgtggtg 465419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 325 - 402
Target Start/End: Original strand, 43384230 - 43384307
Alignment:
Q  325 tttagggttttaaaattgagaattgttaattgaaaatttggatgtgtaagttataggaataaaacatgatattgtgaa 402  Q
    ||||| |||||| ||||| ||||||||||||| ||| ||||||| |||| ||||||||||||||||| ||||||||||    
T  43384230 tttagagttttagaattgggaattgttaattggaaaattggatgcgtaaattataggaataaaacattatattgtgaa 43384307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 1204983 - 1204940
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||||||||| | |||||||||    
T  1204983 gttatagtgttaacttcaccagaaaagtcattctcatgacttca 1204940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 10555336 - 10555379
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||||||||| | |||||||||    
T  10555336 gttatagtgttaacttcaccaaaaaagtcattctcatgacttca 10555379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 15009298 - 15009255
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||||||||| | |||||||||    
T  15009298 gttatagtgttaacttcaccaaaaaagtcattcttatgacttca 15009255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 23854565 - 23854608
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||||||||| | |||||||||    
T  23854565 gttatagtgttaacttcaccaaaaaagtcattctcatgacttca 23854608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 34895023 - 34894980
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    |||||||||||||||||| || |||||||||||| |||||||||    
T  34895023 gttatagtgttaacttcatcagaaaagtcattttcatgacttca 34894980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 34952167 - 34952206
Alignment:
Q  32 tatagtgttaacttcaccacaaaagtcattttaatgactt 71  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  34952167 tatagtgttaacttgaccagaaaagtcattttaatgactt 34952206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 37970653 - 37970696
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||||||||| | |||||||||    
T  37970653 gttatagtgttaacttcaccaaaaaagtcattctcatgacttca 37970696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 282 - 379
Target Start/End: Complemental strand, 19952375 - 19952276
Alignment:
Q  282 aaggtaaatcaattgattctccaatttttccttctttccttgctttagggttttaaaattgagaat--tgttaattgaaaatttggatgtgtaagttata 379  Q
    ||||||| ||||||||||||||||||| | |||  ||||||  |||||||||||| ||||||||||  ||||||||||||| |||||||||||| |||||    
T  19952375 aaggtaagtcaattgattctccaatttcttctttcttcctttttttagggttttagaattgagaattgtgttaattgaaaaattggatgtgtaaattata 19952276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 18494416 - 18494457
Alignment:
Q  32 tatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  18494416 tatagtgttaacttcaccagaaaagtcattttcatgacttca 18494457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 26357634 - 26357591
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    |||||||||||||||||| || |||||||||||| |||||||||    
T  26357634 gttatagtgttaacttcatcagaaaagtcattttcatgacttca 26357591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 33660514 - 33660557
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    |||||||||||||||| || | ||||||||||||||||||||||    
T  33660514 gttatagtgttaacttaactagaaaagtcattttaatgacttca 33660557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 19313907 - 19313866
Alignment:
Q  32 tatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    |||| |||||||||||||| |||||||||| |||||||||||    
T  19313907 tataatgttaacttcaccagaaaagtcattctaatgacttca 19313866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 41465564 - 41465523
Alignment:
Q  32 tatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||| |||||||||| | |||||||||    
T  41465564 tatagtgttaacttcaccagaaaagtcattctcatgacttca 41465523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 5881580 - 5881548
Alignment:
Q  41 aacttcaccacaaaagtcattttaatgacttca 73  Q
    |||||||||| ||||||||||||||||||||||    
T  5881580 aacttcaccagaaaagtcattttaatgacttca 5881548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 33902121 - 33902081
Alignment:
Q  34 tagtgttaacttcaccacaaaagtcattttaatgacttcat 74  Q
    ||||||||||||||||| |||||||||| ||| ||||||||    
T  33902121 tagtgttaacttcaccagaaaagtcattctaacgacttcat 33902081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 35958966 - 35958922
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttcat 74  Q
    |||||||||  |||||||||| |||||||||||| ||||||||||    
T  35958966 gttatagtggcaacttcaccaaaaaagtcatttttatgacttcat 35958922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 371
Target Start/End: Complemental strand, 37382794 - 37382703
Alignment:
Q  282 aaggtaaatcaattgattctccaatttttccttctttccttgctttagggttttaaaattgagaat--tgttaattgaaaatttggatgtgt 371  Q
    ||||||| ||||||||||||| ||||| |||||| ||||||| |||||||||||| || |||||||  ||||||||||||| || |||||||    
T  37382794 aaggtaagtcaattgattctcgaatttctccttccttccttgttttagggttttagaactgagaattgtgttaattgaaaaattagatgtgt 37382703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 2613938 - 2613893
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttcata 75  Q
    |||||||||||||||||| || ||||||||||||||||||||||||    
T  2613938 gttatagtgttaacttcaacaaaaaagtcattttaatgacttcata 2613893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 29163905 - 29163852
Alignment:
Q  20 gacatcatcagttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    |||||||  |||||||||||||||||||||| |||| |||||||||||||||||    
T  29163905 gacatcaaaagttatagtgttaacttcaccagaaaaatcattttaatgacttca 29163852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 29099403 - 29099360
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||||||||| |||||||||||    
T  29099403 gttatagtgttaacttcaccagaaaagtcattctaatgacttca 29099360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 43136142 - 43136214
Alignment:
Q  282 aaggtaaatcaattgattctccaattt----ttccttctttccttgctttagggttttaaaattgagaattgt 350  Q
    ||||||| |||||||||||||||||||    ||||||| ||||||| |||||||||||| ||||| |||||||    
T  43136142 aaggtaagtcaattgattctccaatttcttcttccttccttccttgatttagggttttagaattgggaattgt 43136214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 46297890 - 46297933
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||||||||||| |||||||||    
T  46297890 gttatagtgttaacttcaccagaaaagtcattttcatgacttca 46297933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 35844374 - 35844331
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||||||||| | |||||||||    
T  35844374 gttatagtgttaacttcaccagaaaagtcattatcatgacttca 35844331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 44891554 - 44891512
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||||||||||| |||||||||    
T  44891554 gttatagtgttaacttcacca-aaaagtcattttcatgacttca 44891512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 11357495 - 11357535
Alignment:
Q  32 tatagtgttaacttcaccacaaaagtcattttaatgacttc 72  Q
    ||||||||||||||||||| |||||||||| | ||||||||    
T  11357495 tatagtgttaacttcaccagaaaagtcattctcatgacttc 11357535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 328 - 395
Target Start/End: Original strand, 367 - 434
Alignment:
Q  328 agggttttaaaattgagaattgttaattgaaaatttggatgtgtaagttataggaataaaacatgata 395  Q
    ||||||||| ||||| ||||||||||||  ||| |||||||||||| |||||||||||||||||||||    
T  367 agggttttagaattgggaattgttaatttgaaaattggatgtgtaaattataggaataaaacatgata 434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 386
Target Start/End: Complemental strand, 36906820 - 36906726
Alignment:
Q  291 caattgattctccaatttttccttctttccttgctttagggttttaaaattgagaattgttaattgaaaatttggatgtgtaagttataggaataa 386  Q
    ||||||||||||||||||||  | ||| |||||||||||||||||| ||||  ||||||||||||| ||  |||||||||||| |  |||||||||    
T  36906820 caattgattctccaattttttatcctt-ccttgctttagggttttagaattaggaattgttaattggaacattggatgtgtaattcgtaggaataa 36906726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 17842715 - 17842758
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||||||||||| |||||||||    
T  17842715 gttatagtgttaacttcaccaaaaaagtcatttttatgacttca 17842758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 37109904 - 37109861
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||||||||||| |||||||||    
T  37109904 gttatagtgttaacttcaccaaaaaagtcatttttatgacttca 37109861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 12165782 - 12165741
Alignment:
Q  32 tatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||| |||||||||||||| |||||||    
T  12165782 tatagtgttaacttcaccagaaaagtcattttaacgacttca 12165741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 23111222 - 23111179
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||| ||||||| |||||||||    
T  23111222 gttatagtgttaacttcaccagaaaaatcattttcatgacttca 23111179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 24211773 - 24211730
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||||||||| | |||||||||    
T  24211773 gttatagtgttaacttcaccaaaaaagtcattcttatgacttca 24211730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 38258577 - 38258534
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||| ||||||| |||||||||    
T  38258577 gttatagtgttaacttcaccaaaaaaatcatttttatgacttca 38258534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 74
Target Start/End: Original strand, 31520854 - 31520896
Alignment:
Q  32 tatagtgttaacttcaccacaaaagtcattttaatgacttcat 74  Q
    |||||| |||||||||||| |||||||||||| ||||||||||    
T  31520854 tatagtattaacttcaccaaaaaagtcattttcatgacttcat 31520896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 8299245 - 8299204
Alignment:
Q  32 tatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||| ||||||||||||  ||||||||    
T  8299245 tatagtgttaacttcaccagaaaagtcattttcgtgacttca 8299204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 22687271 - 22687226
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttcata 75  Q
    |||||||||||||||||| || |||||||||| | |||||||||||    
T  22687271 gttatagtgttaacttcatcagaaaagtcattctcatgacttcata 22687226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 7693287 - 7693244
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  7693287 gttatagtgttaacttcaccagaaaagtcattttaatgacttca 7693244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 26317802 - 26317846
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttcat 74  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||    
T  26317802 gttatagtgttaacttcaccaaaaaagtcattttcatgacttcat 26317846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 9200290 - 9200247
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||||| |||||||||||||||    
T  9200290 gttatagtgttaacttcaccagaaaagttattttaatgacttca 9200247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 379
Target Start/End: Original strand, 1280039 - 1280111
Alignment:
Q  309 ttccttctttccttgctttagggttttaaaattgagaa--ttgttaattgaaaatttggatgtgtaagttata 379  Q
    ||||||| ||||||| |||||||||||| ||||| |||  |||| ||||||||| |||||||||||| |||||    
T  1280039 ttccttccttccttgttttagggttttagaattgggaattttgtgaattgaaaaattggatgtgtaaattata 1280111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 19119914 - 19119873
Alignment:
Q  32 tatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    |||||||||||||||||||||||||||||| | |||||||||    
T  19119914 tatagtgttaacttcaccacaaaagtcattctcatgacttca 19119873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 5112431 - 5112474
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    |||||||| |||||||||||| |||||||||||| |||||||||    
T  5112431 gttatagtattaacttcaccaaaaaagtcattttcatgacttca 5112474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 12910407 - 12910364
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    |||||||| |||||||||||| |||||||||||| |||||||||    
T  12910407 gttatagttttaacttcaccaaaaaagtcattttcatgacttca 12910364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 31705729 - 31705772
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||| ||||||| |||||||||    
T  31705729 gttatagtgttaacttcaccaaaaaaatcatttttatgacttca 31705772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 32563206 - 32563163
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    |||||||||||||||||| || |||| |||||||||||||||||    
T  32563206 gttatagtgttaacttcatcagaaaaatcattttaatgacttca 32563163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 1429265 - 1429306
Alignment:
Q  32 tatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||| || ||||||||| |||||||||    
T  1429265 tatagtgttaacttcaccaaaagagtcattttcatgacttca 1429306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 5748478 - 5748441
Alignment:
Q  37 tgttaacttcaccacaaaagtcattttaatgacttcat 74  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  5748478 tgttaacttcaccaaaaaagtcattttcatgacttcat 5748441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 8742007 - 8742048
Alignment:
Q  32 tatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||| |||||||||| | |||||||||    
T  8742007 tatagtgttaacttcaccagaaaagtcattctcatgacttca 8742048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 40133440 - 40133399
Alignment:
Q  32 tatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    |||| |||||||||||||||||||||||||||  ||||||||    
T  40133440 tataatgttaacttcaccacaaaagtcattttcgtgacttca 40133399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 378
Target Start/End: Complemental strand, 26273461 - 26273371
Alignment:
Q  290 tcaattgattctccaatttttccttctttccttgctttagggttttaaaattgagaat--tgttaattgaaaatttggatgtgtaagttat 378  Q
    ||||||||||||||||||| || ||| ||| ||  |||||||||||| ||||| ||||  ||||||||||||| |||||||||||| ||||    
T  26273461 tcaattgattctccaatttctcattccttctttattttagggttttagaattgggaattgtgttaattgaaaaattggatgtgtaaattat 26273371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 18422704 - 18422661
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||||||||||| |||||||||    
T  18422704 gttatagtgttaacttcaccaaaaaagtcatttttatgacttca 18422661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 1547340 - 1547297
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||||||||| | |||||||||    
T  1547340 gttatagtgttaacttcaccagaaaagtcattctcatgacttca 1547297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 2959801 - 2959758
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    |||||||||||||||||| || |||||||||||| |||||||||    
T  2959801 gttatagtgttaacttcatcagaaaagtcattttcatgacttca 2959758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 15752082 - 15752039
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||||||||| | |||||||||    
T  15752082 gttatagtgttaacttcaccaaaaaagtcattctcatgacttca 15752039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 37451339 - 37451296
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    |||||||||||||||| |||| |||||||||||| |||||||||    
T  37451339 gttatagtgttaactttaccaaaaaagtcatttttatgacttca 37451296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 16415696 - 16415655
Alignment:
Q  32 tatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||| |||||||||| | |||||||||    
T  16415696 tatagtgttaacttcaccagaaaagtcattctcatgacttca 16415655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 21289716 - 21289675
Alignment:
Q  32 tatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||| |||||||||| | |||||||||    
T  21289716 tatagtgttaacttcaccagaaaagtcattctcatgacttca 21289675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 7079198 - 7079238
Alignment:
Q  31 ttatagtgttaacttcaccacaaaagtcattttaatgactt 71  Q
    |||||||||||||||||||| |||||||||| | |||||||    
T  7079198 ttatagtgttaacttcaccaaaaaagtcattatcatgactt 7079238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 53124344 - 53124300
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttcat 74  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||    
T  53124344 gttatagtgttaacttcaccaaaaaaatcattttaatgacttcat 53124300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 4598050 - 4598007
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||||||||| |||||||||||    
T  4598050 gttatagtgttaacttcaccagaaaagtcattctaatgacttca 4598007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 39397975 - 39397932
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||||||||| |||||||||||    
T  39397975 gttatagtgttaacttcaccataaaagtcattctaatgacttca 39397932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 4396383 - 4396340
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||| | |||||||||||| |||||||||    
T  4396383 gttatagtgttaacttcactaaaaaagtcatttttatgacttca 4396340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 32912734 - 32912777
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||||||||| | |||||||||    
T  32912734 gttatagtgttaacttcaccaaaaaagtcattcttatgacttca 32912777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 34361645 - 34361688
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||||||||| | |||||||||    
T  34361645 gttatagtgttaacttcaccaaaaaagtcattcttatgacttca 34361688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 35021189 - 35021232
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    |||||| |||||||||||||| |||||||||||| |||||||||    
T  35021189 gttataatgttaacttcaccagaaaagtcattttcatgacttca 35021232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 38819271 - 38819342
Alignment:
Q  282 aaggtaaatcaattgattctccaatt-tttccttctttccttgctttagggttttaaaattgagaattgtta 352  Q
    ||||||| |||||| ||||||||||| |||| ||||||| ||  |||||||||| ||||||| |||||||||    
T  38819271 aaggtaagtcaattcattctccaattgtttctttctttctttattttagggtttcaaaattgggaattgtta 38819342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 52516654 - 52516611
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||||||||| | |||||||||    
T  52516654 gttatagtgttaacttcaccataaaagtcattctcatgacttca 52516611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 30002783 - 30002821
Alignment:
Q  35 agtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  30002783 agtgttaacttcaccagaaaaatcattttaatgacttca 30002821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 37775725 - 37775683
Alignment:
Q  31 ttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    |||||||| ||||||||||| |||| |||||||||||||||||    
T  37775725 ttatagtgctaacttcaccaaaaaaatcattttaatgacttca 37775683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 7703574 - 7703533
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgactt 71  Q
    ||||||||||||||||||||| |||||||||| | |||||||    
T  7703574 gttatagtgttaacttcaccagaaaagtcattctcatgactt 7703533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 47253804 - 47253763
Alignment:
Q  32 tatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||| |||||||||| | |||||||||    
T  47253804 tatagtgttaacttcaccaaaaaagtcattctcatgacttca 47253763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 51204633 - 51204593
Alignment:
Q  33 atagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    |||| ||||||||||||| |||||||||||| |||||||||    
T  51204633 atagggttaacttcaccagaaaagtcatttttatgacttca 51204593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 4318950 - 4318993
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||||||||| | |||||||||    
T  4318950 gttatagtgttaacttcaccaaaaaagtcattctcatgacttca 4318993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 5627448 - 5627405
Alignment:
Q  30 gttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    ||||||||||||||||||||| |||||||||| | |||||||||    
T  5627448 gttatagtgttaacttcaccaaaaaagtcattcttatgacttca 5627405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 8513289 - 8513247
Alignment:
Q  31 ttatagtgttaacttcaccacaaaagtcattttaatgacttca 73  Q
    |||||||||||||||||||| |||||||||| | |||||||||    
T  8513289 ttatagtgttaacttcaccagaaaagtcattctcatgacttca 8513247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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