View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_low_17 (Length: 468)
Name: NF1084_low_17
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 33 - 461
Target Start/End: Original strand, 28283479 - 28283907
Alignment:
| Q |
33 |
gcatgagaaaaattgagcgactccttcggtccacatggtccgctaccaaatattccactttcatatttcttgaagtcatcgttaatcgcgattgcaactg |
132 |
Q |
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| T |
28283479 |
gcatgagaaaaattgagcgactccttcggtccacatggtccgctaccaaatattccactttcatatttcttgaagtcatcgttaatcgcgattgcaactg |
28283578 |
T |
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| Q |
133 |
taaccggctgttctgccactgcttctaataggttttgttcgccgggtgatactattacataaccatcaatttttgcagcacggtcttttctgttgctaag |
232 |
Q |
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| T |
28283579 |
taaccggctgttgtgccactgcttctaataggttttgttcgccgggtgatactattacataaccatcaattttcgcagcacggtcttttttgttgctaag |
28283678 |
T |
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| Q |
233 |
gcatgtacccactttttctgtgtaaggataatccacatcttttgctattccattggtcttcatatactctaaagcttttcgtacgctacctccttcgcat |
332 |
Q |
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| T |
28283679 |
gcatgtacccactttttctgtgtaaggataatccacatcttttgctattccattggtcttcatatactctaaagcttttcgtacgctacctccttcgcat |
28283778 |
T |
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| Q |
333 |
ccaccattcgctttgtcacagtctaccaattcttgcatagatagcgacgtcaattccttatcggttttgattttcataattccttctaccgctgctgttg |
432 |
Q |
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| T |
28283779 |
ccaccattcgctttgtcacagtctaccaattcttgcatagatagtgacgtcaattccttatcggttttgattttcataattccttctaccgctgctgttg |
28283878 |
T |
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| Q |
433 |
tcgcaaatgcataacaacatcctatgata |
461 |
Q |
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| T |
28283879 |
tcgcaaatgcataacaacatcctatgata |
28283907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 442
Target Start/End: Complemental strand, 28004449 - 28004353
Alignment:
| Q |
343 |
ctttgtcacagtctaccaattcttgcatagatagcgacgtcaattccttatcggttttgattttcataattccttctaccgctgctgttgtcgcaaatgc |
442 |
Q |
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| T |
28004449 |
ctttgtcacagtccaccaattattgcgcagatagcgacaccaattccctgt---ttttgatttgcacaattccttctaccgctgccaatgtcgcaaatgc |
28004353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 457
Target Start/End: Complemental strand, 27349137 - 27349078
Alignment:
| Q |
398 |
tttgattttcataattccttctaccgctgctgttgtcgcaaatgcataacaacatcctat |
457 |
Q |
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| T |
27349137 |
tttgattttcataattccttctaccgttgcagttaccgcaaatgcccaacaacttcctat |
27349078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 88
Target Start/End: Complemental strand, 28004733 - 28004703
Alignment:
| Q |
58 |
tcggtccacatggtccgctaccaaatattcc |
88 |
Q |
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| T |
28004733 |
tcggtccacatggtccgctaccaaatattcc |
28004703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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