View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1084_low_18 (Length: 467)

Name: NF1084_low_18
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1084_low_18
NF1084_low_18
[»] chr5 (3 HSPs)
chr5 (19-439)||(8939570-8939990)
chr5 (83-173)||(33155589-33155679)
chr5 (97-141)||(2818988-2819032)
[»] chr8 (7 HSPs)
chr8 (24-184)||(33474216-33474378)
chr8 (89-173)||(6863048-6863132)
chr8 (91-197)||(7664008-7664114)
chr8 (136-187)||(13921204-13921255)
chr8 (69-187)||(3795343-3795460)
chr8 (59-197)||(29264536-29264674)
chr8 (83-173)||(34018225-34018315)
[»] chr1 (3 HSPs)
chr1 (26-197)||(41625470-41625643)
chr1 (94-173)||(7890387-7890466)
chr1 (91-145)||(27925360-27925414)
[»] chr4 (4 HSPs)
chr4 (115-187)||(51079059-51079131)
chr4 (99-144)||(8482372-8482417)
chr4 (51-140)||(15835312-15835400)
chr4 (131-203)||(56127355-56127427)
[»] chr6 (4 HSPs)
chr6 (81-175)||(27598160-27598254)
chr6 (99-170)||(13587603-13587674)
chr6 (91-141)||(12329717-12329767)
chr6 (138-202)||(11620257-11620321)
[»] chr3 (2 HSPs)
chr3 (53-171)||(52416382-52416500)
chr3 (112-169)||(40285439-40285496)
[»] chr7 (1 HSPs)
chr7 (106-144)||(46981398-46981436)
[»] chr2 (1 HSPs)
chr2 (102-171)||(42206094-42206163)


Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 19 - 439
Target Start/End: Complemental strand, 8939990 - 8939570
Alignment:
Q  19 atggttttgtctaacatgcacaagtaaattatttgcactatgcacaagtttactttctatcgttggatccaaaaatcacatcatatttcaattaatttaa 118  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8939990 atggttttgtctaacatgcacaagtaaattacttgcacaatgcacaagtttactttctatcgttggatccaaaaatcacatcatatttcaattaatttaa 8939891  T
Q  119 tggtgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaagacttaacttccttgtgcagaatagacttagccttactctatatatgaag 218  Q
     |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8939890 cggtgaaacttattgatccaatggtggaaacaactttgtgcatggtgcaagacttaacttccttgtgcagaatagacttagctttactctatatatgaag 8939791  T
Q  219 atgcaaatgaatttgaattgatctaataactagtaaatgttttccttttatttatgtgaaaagtttcttatacaccaacttcttatactttgtggtgaat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8939790 atgcaaatgaatttgaattgatctaataactagtaaatgttttccttttatttatgtgaaaagtttcttatacaccaacttcttatactttgtggtgaat 8939691  T
Q  319 atcatttactgtctataggcatctaaatgttcacaaatgtatagtataactgtccaataatatgtataatgaggtaaaaatgacaatacttgcgtttgat 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8939690 atcatttactgtctataggcatctaaatgttcacaaatgtatagtataactgtccaataatatgtataatgaggtaaaaatgacaatacttgcttttgat 8939591  T
Q  419 taccgtattttgcagggtttt 439  Q
    |||||||||||||||||||||    
T  8939590 taccgtattttgcagggtttt 8939570  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 33155589 - 33155679
Alignment:
Q  83 ggatccaaaaatcacatcatatttcaattaatttaatggtgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaagactt 173  Q
    ||||| |||| ||| ||||| | ||| ||||||||||||||  | |||||||||||||||||  ||| |  ||||||||| ||||||||||    
T  33155589 ggatcaaaaagtcaaatcatttctcatttaatttaatggtgggatttattgatccaatggtgaaaactagcttgtgcatgatgcaagactt 33155679  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 2819032 - 2818988
Alignment:
Q  97 catcatatttcaattaatttaatggtgaaacttattgatccaatg 141  Q
    |||||||||||| ||||| ||||||||| | ||||||||||||||    
T  2819032 catcatatttcatttaatctaatggtgagatttattgatccaatg 2818988  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 33474378 - 33474216
Alignment:
Q  24 tttgtctaacatgcacaagtaaatta--tttgcactatgcacaagtttactttctatcgttggatccaaaaatcacatcatatttcaattaatttaatgg 121  Q
    ||||||||||||||| |||| |||||  ||||||| ||||||||||  || || || | ||||||  | |||| |||| |||||| | ||||||||||||    
T  33474378 tttgtctaacatgcataagttaattacttttgcaccatgcacaagtcgacattttagcattggatttataaattacattatattttatttaatttaatgg 33474279  T
Q  122 tgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaagacttaacttccttgt 184  Q
    ||||||||||||||| |||||||  |||||| |||| |||| ||||||||||| |||||||||    
T  33474278 tgaaacttattgatcaaatggtgaaaacaaccttgtacatgatgcaagacttatcttccttgt 33474216  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 6863132 - 6863048
Alignment:
Q  89 aaaaatcacatcatatttcaattaatttaatggtgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaagactt 173  Q
    |||| ||||||||||||||| ||||||||||||||| | |||||||||||||||||| ||| |  ||||| ||| ||||||||||    
T  6863132 aaaagtcacatcatatttcatttaatttaatggtgagatttattgatccaatggtggaaactagcttgtgtatgatgcaagactt 6863048  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 7664008 - 7664114
Alignment:
Q  91 aaatcacatcatatttcaattaatttaatggtgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaagacttaacttccttgtgcagaa 190  Q
    |||| ||||||||||||| |||||||||||| || | || |||||| |||||| | || | |||  |||||||||||||||||  ||| ||||||||  |    
T  7664008 aaattacatcatatttcatttaatttaatggggagattttttgatctaatggttgaaatagcttgatgcatggtgcaagactttcctttcttgtgcatca 7664107  T
Q  191 tagactt 197  Q
    |||||||    
T  7664108 tagactt 7664114  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 13921204 - 13921255
Alignment:
Q  136 ccaatggtggcaacaactttgtgcatggtgcaagacttaacttccttgtgca 187  Q
    |||||||||| |||||| |||| |||||||||||||||| | ||||||||||    
T  13921204 ccaatggtggaaacaaccttgtacatggtgcaagacttatcatccttgtgca 13921255  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 187
Target Start/End: Complemental strand, 3795460 - 3795343
Alignment:
Q  69 tactttctatcgttggatccaaaaatcacatcatatttcaattaatttaatggtgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaa 168  Q
    ||||||||||  || |||| | ||||||||  |||||| | |||| ||| | |||||||||||| |||||||| ||| |||||| ||||||||| ||||     
T  3795460 tactttctatgattcgatcaataaatcacaatatatttaatttaacttacttgtgaaacttatt-atccaatgttggaaacaacattgtgcatgttgcat 3795362  T
Q  169 gacttaacttccttgtgca 187  Q
    |||||  | ||||||||||    
T  3795361 gacttctcatccttgtgca 3795343  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 197
Target Start/End: Complemental strand, 29264674 - 29264536
Alignment:
Q  59 tgcacaagtttactttctatcgttggatccaaaaatcacatcatatttcaattaatttaatggtgaaacttattgatccaatggtggcaacaactttgtg 158  Q
    |||||||||||| || | | | ||||||| | ||||| || ||||||| | ||||||||||  |||  |||||||||||| ||||   ||| || |||||    
T  29264674 tgcacaagtttatttgccaccattggatcaataaatctcaccatatttaatttaatttaatattgagccttattgatccagtggtaaaaaccacattgtg 29264575  T
Q  159 catggtgcaagacttaacttccttgtgcagaatagactt 197  Q
    ||||||||||||| ||| | || ||||||  ||||||||    
T  29264574 catggtgcaagacgtaagtcccgtgtgcaccatagactt 29264536  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 34018225 - 34018315
Alignment:
Q  83 ggatccaaaaatcacatcatatttcaattaatttaatggtgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaagactt 173  Q
    ||||| |||| ||| ||||| | ||| |||||||||||||| || ||||||||||||||||   ||| |  ||||||||| ||||||||||    
T  34018225 ggatcaaaaagtcaaatcatttctcatttaatttaatggtggaatttattgatccaatggtaaaaactagcttgtgcatgatgcaagactt 34018315  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 41625643 - 41625470
Alignment:
Q  26 tgtctaacatgcacaagtaaatta--tttgcactatgcacaagtttactttctatcgttggatccaaaaatcacatcatatttcaattaatttaatggtg 123  Q
    ||||||||||||| ||| ||||||  ||||||| ||  |||||| || |||||| | ||||||| |  |||| |||||||||| | |||||||||| |||    
T  41625643 tgtctaacatgcataagcaaattacttttgcaccatatacaagtctattttctaccattggatcaatgaatctcatcatattttatttaatttaatagtg 41625544  T
Q  124 aaacttattgatccaatggtggcaacaactttgtgcatggtgcaagacttaacttccttgtgcagaatagactt 197  Q
    ||| ||||||||| |||||||| || ||  ||||||||||||||||||||| ||| | ||||||  ||||||||    
T  41625543 aaatttattgatctaatggtggaaagaatcttgtgcatggtgcaagacttatcttgcatgtgcaccatagactt 41625470  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 7890466 - 7890387
Alignment:
Q  94 tcacatcatatttcaattaatttaatggtgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaagactt 173  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||| |||  ||| |||||||||||| ||||| ||||    
T  7890466 tcacatcatatttcatttaatttaatggtgaaatttattgatccaatagtgaaaactactttgtgcatgatgcaatactt 7890387  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 27925360 - 27925414
Alignment:
Q  91 aaatcacatcatatttcaattaatttaatggtgaaacttattgatccaatggtgg 145  Q
    |||||||||||||| ||| || |||||||  ||||| ||||||||||||||||||    
T  27925360 aaatcacatcatatctcattttatttaatcatgaaatttattgatccaatggtgg 27925414  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 51079131 - 51079059
Alignment:
Q  115 ttaatggtgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaagacttaacttccttgtgca 187  Q
    ||||| ||| || ||||||||||||| |||| |||||| ||||||||||||||||||||| ||| ||||||||    
T  51079131 ttaatagtggaatttattgatccaatagtggaaacaaccttgtgcatggtgcaagacttatcttgcttgtgca 51079059  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 8482417 - 8482372
Alignment:
Q  99 tcatatttcaattaatttaatggtgaaacttattgatccaatggtg 144  Q
    |||||||||| ||||||||||||||||| ||||||| |||||||||    
T  8482417 tcatatttcatttaatttaatggtgaaatttattgaaccaatggtg 8482372  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 140
Target Start/End: Original strand, 15835312 - 15835400
Alignment:
Q  51 ttgcactatgcacaagtttactttctatcgttggatccaaaaatcacatcatatttcaattaatttaatggtgaaacttattgatccaat 140  Q
    |||||| ||||||||||||| ||| |||| || |||| |||| || |||||||||| | || | ||||| |||||| |||||||||||||    
T  15835312 ttgcaccatgcacaagtttatttt-tatcattagatcaaaaagtcgcatcatattttatttcacttaatcgtgaaatttattgatccaat 15835400  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 203
Target Start/End: Complemental strand, 56127427 - 56127355
Alignment:
Q  131 ttgatccaatggtggcaacaactttgtgcatggtgcaagacttaacttccttgtgcagaatagacttagcctt 203  Q
    |||| |||||||||  ||||| |||||||||||||||||||||  ||  ||||||||  |||||||| |||||    
T  56127427 ttgaaccaatggtgaaaacaagtttgtgcatggtgcaagacttgtctcacttgtgcaccatagacttggcctt 56127355  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 81 - 175
Target Start/End: Complemental strand, 27598254 - 27598160
Alignment:
Q  81 ttggatccaaaaatcacatcatatttcaattaatttaatggtgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaagacttaa 175  Q
    ||||||| | ||||| || ||||||||| ||||||||||  |||  |||||||||||||||||   ||| || ||||||||||||||||||||||    
T  27598254 ttggatcaataaatctcaccatatttcatttaatttaatactgagccttattgatccaatggtaaaaaccacgttgtgcatggtgcaagacttaa 27598160  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 170
Target Start/End: Complemental strand, 13587674 - 13587603
Alignment:
Q  99 tcatatttcaattaatttaatggtgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaaga 170  Q
    |||||||||| | |||||||| |||| | |||||||||||||||| | |||||| || ||||||||||||||    
T  13587674 tcatatttcattcaatttaatagtgagatttattgatccaatggtagaaacaaccttatgcatggtgcaaga 13587603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 12329767 - 12329717
Alignment:
Q  91 aaatcacatcatatttcaattaatttaatggtgaaacttattgatccaatg 141  Q
    ||||||||| |||| ||||||||||||||||||||| |||||||| |||||    
T  12329767 aaatcacataatatctcaattaatttaatggtgaaatttattgattcaatg 12329717  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 11620257 - 11620321
Alignment:
Q  138 aatggtggcaacaactttgtgcatggtgcaagacttaacttccttgtgcagaatagacttagcct 202  Q
    |||||||  ||| ||||||||||||| |||||||||| |||||||||| |  |||||||| ||||    
T  11620257 aatggtgaaaacgactttgtgcatggcgcaagacttatcttccttgtgaaccatagacttggcct 11620321  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 171
Target Start/End: Complemental strand, 52416500 - 52416382
Alignment:
Q  53 gcactatgcacaagtttactttctatcgttggatccaaaaatcacatcatatttcaattaatttaatggtgaaacttattgatccaatggtggcaacaac 152  Q
    |||| ||||||||||||  |||||| ||||| ||| | || |||||||| ||  ||||| ||  || |||   |||||||||||||||||||| |||||     
T  52416500 gcaccatgcacaagtttgttttctaccgttgaatcaacaagtcacatcaaatcacaattgatccaagggtacgacttattgatccaatggtggaaacaag 52416401  T
Q  153 tttgtgcatggtgcaagac 171  Q
    | |||||||||||||||||    
T  52416400 tatgtgcatggtgcaagac 52416382  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 40285439 - 40285496
Alignment:
Q  112 aatttaatggtgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaag 169  Q
    |||||||| |||| ||||||||||| ||| ||   |||||||||||||||||||||||    
T  40285439 aatttaatagtgagacttattgatcaaattgtataaacaactttgtgcatggtgcaag 40285496  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 46981398 - 46981436
Alignment:
Q  106 tcaattaatttaatggtgaaacttattgatccaatggtg 144  Q
    |||||||||||||||||| || |||||||||||||||||    
T  46981398 tcaattaatttaatggtgtaaattattgatccaatggtg 46981436  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 42206163 - 42206094
Alignment:
Q  102 tatttcaattaatttaatggtgaaacttattgatccaatggtggcaacaactttgtgcatggtgcaagac 171  Q
    ||||||| ||||||||| ||||  ||||||||||| | |||| | || ||| ||||||||||||||||||    
T  42206163 tatttcatttaatttaacggtgcgacttattgatctattggtagaaaaaaccttgtgcatggtgcaagac 42206094  T

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