View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_low_19 (Length: 466)
Name: NF1084_low_19
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 126 - 465
Target Start/End: Original strand, 21049586 - 21049928
Alignment:
| Q |
126 |
ttatttaaactttttaaatcacccaaaaataactctcacctttaacacaattcatgaattacttttttggccgttggttgtttacttaatcgataaggga |
225 |
Q |
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| T |
21049586 |
ttatttaaactttttaaatcacccaaaaataagtctcacctttaacacaattcatgaattacttttttggccgttggttgtttacttaatcgataaggga |
21049685 |
T |
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| Q |
226 |
aaaagaattgtcatgtaaagatcaatagaagnnnnnnn---ttgaaaagaacaaaactttttcacgatataatgttgttgtaaaagtttttacacataaa |
322 |
Q |
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| T |
21049686 |
aaaagaattgtcatgtaaagatcaatagaagaagaaaaaaattgaaaagaacaaaactttttcacgatataatgttgttgtaaaagtttttacacataaa |
21049785 |
T |
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| Q |
323 |
ctactcaaacttaacatttgtataatttatttttagttttaatcctccacttttcgagaaaagggttgctaattagttgtcgaatgaaatataaataaaa |
422 |
Q |
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| T |
21049786 |
ctactcaaacttaacatttgtataatttatttttagttttaatcctccacttttcgagaaaagggttggtaattagttgtcgaatgaaatgtaagtaaaa |
21049885 |
T |
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| Q |
423 |
tttgatcaaaagatttacatttataaatgaaattcagattctt |
465 |
Q |
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| T |
21049886 |
tttgatcaaaagatttacatttataaataaaattcagattctt |
21049928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 21049521 - 21049588
Alignment:
| Q |
102 |
aaataacttttaatttatggtcacttatttaaactttttaaatcacccaaaaataactctcaccttta |
169 |
Q |
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| T |
21049521 |
aaataacttttaatttatggtcacttatttaaactttttaaatcacccaaaaataactctcaccttta |
21049588 |
T |
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