View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_low_2 (Length: 845)
Name: NF1084_low_2
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 27083868 - 27083553
Alignment:
| Q |
1 |
ttcatatcacttcaattttcaacaataaccgcaaagaacaatcagttcagcgataaacttcatcaacactaagaaatcgaacacagaaaagagattaaga |
100 |
Q |
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| T |
27083868 |
ttcatatcacttcaattttcaacaacaaccgcaaagaacaatcagttcagcgataaacttcatcaacactaagaaatcgaacacagaaaagagattaaga |
27083769 |
T |
|
| Q |
101 |
gatgaacggatttcatttgaagctcatacgattcatgcaatctaaatactaaaacaattcaacttcgaacaaatcaaaaattaaagccaacaaaacgttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27083768 |
gatgaacggatttcatttgaagctcatacgattcatgcaatctaaatactaaaacaattcaacttcgaacaaatcaaaaattaaagtcaacaaaacgttc |
27083669 |
T |
|
| Q |
201 |
atatcactgcaattttcaaccgtaacagtttagagacaaatttcatcaacacgagaacttcatcaactgttgccgtcatttcaacttcaacaccattcaa |
300 |
Q |
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| T |
27083668 |
atatcactgcaattttcaaccgtaacagtttagagacaaatttcatcaacacgagaacttcatcaactgttgccgtcatttcaacttcaacaccattcaa |
27083569 |
T |
|
| Q |
301 |
cacaatcagaatgcgg |
316 |
Q |
| |
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|||||||||||||||| |
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| T |
27083568 |
cacaatcagaatgcgg |
27083553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 398 - 679
Target Start/End: Complemental strand, 27083471 - 27083190
Alignment:
| Q |
398 |
aaccgttaaataactatcaatttagctataaacttcatcaaacctatgaaccaaacacagaaaagagattaacaatttcatttgaagctcatatgattca |
497 |
Q |
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| T |
27083471 |
aaccgttaaataactatcaatttagttataaacttcatcaaacctatgaaccaaacacagaaaagagattaacaatttcatttgaagctcatacgattca |
27083372 |
T |
|
| Q |
498 |
tgcaatctaaatactaaaacgattcaacctctagcaaatcaaagtcaacaaaacgttcatatcacttcaattttcaactgaaacagtaacagaagtgtca |
597 |
Q |
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| T |
27083371 |
tgcaatctaaatactaaaacgattcaacctctaacaaatcaaagtcaacaaaacgttcatatcacttcaattttcaactgaaacagtaacagaagtgtca |
27083272 |
T |
|
| Q |
598 |
attcagaaatgaattacatcaacactgagaatttcatcaactactaccgtcatttcaacttcaacactattcaacacaatcg |
679 |
Q |
| |
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| T |
27083271 |
attcagaaatgaattacatcaacactgagaatttcatcaactactaccgtcatttcaacttcaacactattcaacacaatcg |
27083190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 110 - 229
Target Start/End: Complemental strand, 27083397 - 27083285
Alignment:
| Q |
110 |
atttcatttgaagctcatacgattcatgcaatctaaatactaaaacaattcaacttcgaacaaatcaaaaattaaagccaacaaaacgttcatatcactg |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||| |||| ||||||||||||||||||||| |
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| T |
27083397 |
atttcatttgaagctcatacgattcatgcaatctaaatactaaaacgattcaacctctaacaaatc-------aaagtcaacaaaacgttcatatcactt |
27083305 |
T |
|
| Q |
210 |
caattttcaaccgtaacagt |
229 |
Q |
| |
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||||||||||| | |||||| |
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| T |
27083304 |
caattttcaactgaaacagt |
27083285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 472 - 584
Target Start/End: Complemental strand, 27083759 - 27083640
Alignment:
| Q |
472 |
atttcatttgaagctcatatgattcatgcaatctaaatactaaaacgattcaacctctagcaaatc-------aaagtcaacaaaacgttcatatcactt |
564 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||| ||||||| || | |||||| |||||||||||||||||||||||||| |
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| T |
27083759 |
atttcatttgaagctcatacgattcatgcaatctaaatactaaaacaattcaacttcgaacaaatcaaaaattaaagtcaacaaaacgttcatatcactg |
27083660 |
T |
|
| Q |
565 |
caattttcaactgaaacagt |
584 |
Q |
| |
|
||||||||||| | |||||| |
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| T |
27083659 |
caattttcaaccgtaacagt |
27083640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 760 - 813
Target Start/End: Complemental strand, 27083109 - 27083057
Alignment:
| Q |
760 |
ttcaacaataaccgtaaaatactatcaaattaccgaaaattttcatcaaaaaac |
813 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27083109 |
ttcaacaataaccgtaaaatactatcaaattaccgaaaa-tttcatcaaaaaac |
27083057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 533 - 575
Target Start/End: Complemental strand, 27083888 - 27083846
Alignment:
| Q |
533 |
aaatcaaagtcaacaaaacgttcatatcacttcaattttcaac |
575 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27083888 |
aaatcaaagtcaacaaaatgttcatatcacttcaattttcaac |
27083846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 27083260 - 27083191
Alignment:
| Q |
239 |
aatttcatcaacac-gagaacttcatcaactgttgccgtcatttcaacttcaacaccattcaacacaatc |
307 |
Q |
| |
|
|||| ||||||||| ||||| |||||||||| | ||||||||||||||||||||| ||||||||||||| |
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| T |
27083260 |
aattacatcaacactgagaatttcatcaactactaccgtcatttcaacttcaacactattcaacacaatc |
27083191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 609 - 678
Target Start/End: Complemental strand, 27083630 - 27083562
Alignment:
| Q |
609 |
aattacatcaacactgagaatttcatcaactactaccgtcatttcaacttcaacactattcaacacaatc |
678 |
Q |
| |
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|||| ||||||||| ||||| |||||||||| | ||||||||||||||||||||| ||||||||||||| |
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| T |
27083630 |
aatttcatcaacac-gagaacttcatcaactgttgccgtcatttcaacttcaacaccattcaacacaatc |
27083562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 27083893 - 27083846
Alignment:
| Q |
173 |
atcaaaaattaaagccaacaaaacgttcatatcactgcaattttcaac |
220 |
Q |
| |
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||||||||| |||| |||||||| |||||||||||| ||||||||||| |
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| T |
27083893 |
atcaaaaatcaaagtcaacaaaatgttcatatcacttcaattttcaac |
27083846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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