View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1084_low_20 (Length: 459)

Name: NF1084_low_20
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1084_low_20
NF1084_low_20
[»] chr6 (1 HSPs)
chr6 (16-449)||(24254523-24254956)
[»] chr7 (10 HSPs)
chr7 (20-449)||(19326082-19326502)
chr7 (239-449)||(19374530-19374740)
chr7 (239-449)||(19344672-19344882)
chr7 (152-197)||(19779275-19779320)
chr7 (81-127)||(22080470-22080516)
chr7 (310-370)||(12820092-12820152)
chr7 (82-126)||(12820321-12820365)
chr7 (244-284)||(18997860-18997900)
chr7 (146-194)||(19351400-19351448)
chr7 (82-126)||(19721618-19721662)
[»] chr5 (7 HSPs)
chr5 (91-194)||(29647304-29647407)
chr5 (86-202)||(29641981-29642097)
chr5 (91-202)||(29597881-29597992)
chr5 (310-370)||(29597734-29597794)
chr5 (238-279)||(29642139-29642180)
chr5 (238-279)||(29647456-29647497)
chr5 (336-372)||(29642213-29642249)
[»] chr4 (2 HSPs)
chr4 (87-209)||(53790143-53790265)
chr4 (323-377)||(53790391-53790445)
[»] chr2 (2 HSPs)
chr2 (146-198)||(18909160-18909212)
chr2 (85-179)||(18921106-18921200)
[»] chr1 (1 HSPs)
chr1 (308-376)||(4366665-4366733)


Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 16 - 449
Target Start/End: Complemental strand, 24254956 - 24254523
Alignment:
Q  16 ggtataatatctgaaaaattaggatcttttaaagagcctcgcaacggttcatattgctggcgtagcttcacatttgggtatgataattcaactggaactt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  24254956 ggtataatatctgaaaaattaggatcttttaaagagcctcgcaacggttcatattgcagtcgtagcttcacatttgggtatgataattcaactggaactt 24254857  T
Q  116 ataaggtggtgttcttgtgttctagtaaactgaaagttttcagtttgagtgataatatttggagaaaaatttcaagttttcctccttttgaccatgctat 215  Q
    |||||||||||||| | |||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  24254856 ataaggtggtgttcatatgttatagtaaactgaaagttttcagtttgaaggataatatttggagaaaaatttcaaggtttcctccttttgaccatgccat 24254757  T
Q  216 tattcttacctttagtaacaaccaaggagtgtatttgagtggcacagttaattggtttgccattcgaaataaggccatttataattcttataataaggat 315  Q
    |  ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24254756 tcctcttacctttagtaacaatgaaggagtgtatttgagtggcacagttaattggtttgccattcgaaataaggccatttataattcttataataaggat 24254657  T
Q  316 attaccgttgagcaattcatgattatctcccttgatcttggtactgagacatacaagcaatttcagacccctcggggtattgatgaagtgccagatattg 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24254656 attaccgttgagcaattcatgattatctcccttgatcttggtactgagacatacaagcaatttcagacccctcggggtgttgatgaagtgccagatattg 24254557  T
Q  416 aaccgactattgctgtgttgatggactgcctttg 449  Q
    ||||||||||||||||||||||||||||||||||    
T  24254556 aaccgactattgctgtgttgatggactgcctttg 24254523  T

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Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 449
Target Start/End: Complemental strand, 19326502 - 19326082
Alignment:
Q  20 taatatctgaaaaattaggatcttttaaagagcctcgcaacggttcatattgctggcgtagcttcacatttgggtatgataattcaactggaacttataa 119  Q
    ||||||||||||||||| ||||||||||  |  ||||||  |||  ||||||| |||  || ||||||||||||||||||||||||||||||||||||||    
T  19326502 taatatctgaaaaattaagatcttttaacaaaactcgcattggtgtatattgcaggctcaggttcacatttgggtatgataattcaactggaacttataa 19326403  T
Q  120 ggtggtgttcttgtgttctagtaaactgaaagttttcagtttgagtgataatatttggagaaaaatttcaagttttcctccttttgaccatgctattatt 219  Q
    ||||||| ||||| |||||||| |  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |    
T  19326402 ggtggtgctcttgagttctagtgaggtgaaagttttcagtttgagtgataatatttggagaaaaatttcaagctttcctccttttgaccatgctgttact 19326303  T
Q  220 cttacctttagtaacaaccaaggagtgtatttgagtggcacagttaattggtttgccattcgaaataaggccatttataattcttataataaggatatta 319  Q
    |||  ||||||||| ||| |||||||||||||||||||||||||||| ||||||||| |||||| |||| |         |  |||||||||||||||||    
T  19326302 cttggctttagtaagaacgaaggagtgtatttgagtggcacagttaactggtttgcccttcgaagtaagtc---------tagttataataaggatatta 19326212  T
Q  320 ccgttgagcaattcatgattatctcccttgatcttggtactgagacatacaagcaatttcagacccctcggggtattgatgaagtgccagatattgaacc 419  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| || ||| |||    
T  19326211 ccgtcgagcaatttatgattatctcccttgatcttggtactgagacatacaagcaatttcagacccctcgtggtgttgatgaagtgccatatgttgcacc 19326112  T
Q  420 gactattgctgtgttgatggactgcctttg 449  Q
    |||||||||||||||||||||| |||||||    
T  19326111 gactattgctgtgttgatggaccgcctttg 19326082  T

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Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 239 - 449
Target Start/End: Original strand, 19374530 - 19374740
Alignment:
Q  239 aaggagtgtatttgagtggcacagttaattggtttgccattcgaaataaggccatttataattcttataataaggatattaccgttgagcaattcatgat 338  Q
    |||||||||||||||| ||||| ||||| |||||||||||||||| ||||  || | || ||| || | | ||||| ||||| |||| | ||||  ||||    
T  19374530 aaggagtgtatttgagcggcactgttaactggtttgccattcgaagtaagttcagtcatgattattgtcagaaggagattactgttgggaaatttgtgat 19374629  T
Q  339 tatctcccttgatcttggtactgagacatacaagcaatttcagacccctcggggtattgatgaagtgccagatattgaaccgactattgctgtgttgatg 438  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| | ||  ||||||||||||||||| | |||| |||||||||||| |||| |    
T  19374630 tatctcccttgatcttggtaccgagacatacaagcaatttcagacccctagtggcgttgatgaagtgccagatgtggaactgactattgctgtattgacg 19374729  T
Q  439 gactgcctttg 449  Q
    |||||||||||    
T  19374730 gactgcctttg 19374740  T

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Target: chr7; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 239 - 449
Target Start/End: Complemental strand, 19344882 - 19344672
Alignment:
Q  239 aaggagtgtatttgagtggcacagttaattggtttgccattcgaaataaggccatttataattcttataataaggatattaccgttgagcaattcatgat 338  Q
    |||||||||||||||| ||||| ||||| |||| |||||||| || ||||  || | |  ||| || | | ||||||||||| |||| | ||||  ||||    
T  19344882 aaggagtgtatttgagcggcactgttaactggtatgccattcaaagtaagttcagtcaatattattgtcagaaggatattactgttgggaaatttgtgat 19344783  T
Q  339 tatctcccttgatcttggtactgagacatacaagcaatttcagacccctcggggtattgatgaagtgccagatattgaaccgactattgctgtgttgatg 438  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| | | ||  ||||||||||||||||| |||||| |||||||||||| ||||||    
T  19344782 tatctcccttgatcttggtaccgagacatacaagcaatttcagacccttagtggcgttgatgaagtgccagattttgaactgactattgctgtattgatg 19344683  T
Q  439 gactgcctttg 449  Q
    |||||||||||    
T  19344682 gactgcctttg 19344672  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 19779275 - 19779320
Alignment:
Q  152 ttttcagtttgagtgataatatttggagaaaaatttcaagttttcc 197  Q
    ||||||||||||||||||||||||||||| | ||| ||||||||||    
T  19779275 ttttcagtttgagtgataatatttggagagatattccaagttttcc 19779320  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 22080470 - 22080516
Alignment:
Q  81 cttcacatttgggtatgataattcaactggaacttataaggtggtgt 127  Q
    |||||| ||||| |||||||||||||| | |||||||||||||||||    
T  22080470 cttcacgtttggttatgataattcaacagaaacttataaggtggtgt 22080516  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 370
Target Start/End: Complemental strand, 12820152 - 12820092
Alignment:
Q  310 aaggatattaccgttgagcaattcatgattatctcccttgatcttggtactgagacataca 370  Q
    |||||| |||| ||||| ||| | ||||||||||||||||||||| |||| |||| |||||    
T  12820152 aaggattttactgttgaacaacttatgattatctcccttgatcttagtaccgagatataca 12820092  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 12820365 - 12820321
Alignment:
Q  82 ttcacatttgggtatgataattcaactggaacttataaggtggtg 126  Q
    ||||||||||| ||||||||||||||||  ||||| |||||||||    
T  12820365 ttcacatttggttatgataattcaactgacacttacaaggtggtg 12820321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 18997900 - 18997860
Alignment:
Q  244 gtgtatttgagtggcacagttaattggtttgccattcgaaa 284  Q
    |||||| |||||||||| ||||||||||| |||||||||||    
T  18997900 gtgtatgtgagtggcactgttaattggttggccattcgaaa 18997860  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 19351448 - 19351400
Alignment:
Q  146 tgaaagttttcagtttgagtgataatatttggagaaaaatttcaagttt 194  Q
    |||||||||| ||||||||||||||| |||||||| | ||| |||||||    
T  19351448 tgaaagtttttagtttgagtgataatgtttggagagatattccaagttt 19351400  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 19721618 - 19721662
Alignment:
Q  82 ttcacatttgggtatgataattcaactggaacttataaggtggtg 126  Q
    ||||||||||| ||||||| |||||||  ||||||||||||||||    
T  19721618 ttcacatttggttatgatatttcaactaaaacttataaggtggtg 19721662  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 91 - 194
Target Start/End: Original strand, 29647304 - 29647407
Alignment:
Q  91 gggtatgataattcaactggaacttataaggtggtgttcttgtgttctagtaaactgaaagttttcagtttgagtgataatatttggagaaaaatttcaa 190  Q
    |||||||||||||||||| |||||||||| |  ||| | |||||||||||| |  ||||||||||| ||||  ||||||||||||||||||||||| |||    
T  29647304 gggtatgataattcaactagaacttataatgccgtggttttgtgttctagtgaggtgaaagttttccgtttcggtgataatatttggagaaaaattgcaa 29647403  T
Q  191 gttt 194  Q
    ||||    
T  29647404 gttt 29647407  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 86 - 202
Target Start/End: Original strand, 29641981 - 29642097
Alignment:
Q  86 catttgggtatgataattcaactggaacttataaggtggtgttcttgtgttctagtaaactgaaagttttcagtttgagtgataatatttggagaaaaat 185  Q
    |||| |||||||||||||||||| |||||||||| | |||| | |||||| ||||| |  |||||||||||  |||  ||||||||||||||||||||||    
T  29641981 cattcgggtatgataattcaactagaacttataatgcggtggttttgtgtactagtgaggtgaaagttttccatttcggtgataatatttggagaaaaat 29642080  T
Q  186 ttcaagttttcctcctt 202  Q
    | ||| |||| ||||||    
T  29642081 tgcaaattttactcctt 29642097  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 29597992 - 29597881
Alignment:
Q  91 gggtatgataattcaactggaacttataaggtggtgttcttgtgttctagtaaactgaaagttttcagtttgagtgataatatttggagaaaaatttcaa 190  Q
    |||||||||| ||||||| |||||||||| |  ||| | |||||||||||  |  ||||||||||| ||||  |||||||||||||||||||||||  ||    
T  29597992 gggtatgatatttcaactagaacttataatgctgtggttttgtgttctagggaggtgaaagttttccgtttcggtgataatatttggagaaaaattgtaa 29597893  T
Q  191 gttttcctcctt 202  Q
    ||||| ||||||    
T  29597892 gttttactcctt 29597881  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 370
Target Start/End: Complemental strand, 29597794 - 29597734
Alignment:
Q  310 aaggatattaccgttgagcaattcatgattatctcccttgatcttggtactgagacataca 370  Q
    |||||| |||| |||||| ||||  |||||||||| |||||||||| ||||||||||||||    
T  29597794 aaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacataca 29597734  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 29642139 - 29642180
Alignment:
Q  238 caaggagtgtatttgagtggcacagttaattggtttgccatt 279  Q
    ||||||||||||||||||||||| ||||||||| || |||||    
T  29642139 caaggagtgtatttgagtggcactgttaattggatttccatt 29642180  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 29647456 - 29647497
Alignment:
Q  238 caaggagtgtatttgagtggcacagttaattggtttgccatt 279  Q
    ||||||||||||||||||||||| ||||||||| || |||||    
T  29647456 caaggagtgtatttgagtggcactgttaattggatttccatt 29647497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 29642213 - 29642249
Alignment:
Q  336 gattatctcccttgatcttggtactgagacatacaag 372  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  29642213 gattatctcgcttgatcttggtaccgagacatacaag 29642249  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 53790143 - 53790265
Alignment:
Q  87 atttgggtatgataattcaactggaacttataaggtggtgttcttgtgttctagtaaactgaaagttttcagtttgagtgataatatttggagaaaaatt 186  Q
    |||||| |||||||| |  |||||| |||| ||||| |||||  |||||||| | ||  ||||| |||||| | |  |||||||||||||||   |||||    
T  53790143 atttggttatgataacttcactggatcttacaaggtagtgttaatgtgttctggcaaggtgaaaattttcaatataggtgataatatttggactgaaatt 53790242  T
Q  187 tcaagttttcctccttttgacca 209  Q
    ||||||||||||| |||||||||    
T  53790243 tcaagttttcctcgttttgacca 53790265  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 377
Target Start/End: Original strand, 53790391 - 53790445
Alignment:
Q  323 ttgagcaattcatgattatctcccttgatcttggtactgagacatacaagcaatt 377  Q
    |||||||||  ||||||||||  |||||||||||||| ||||||||||| |||||    
T  53790391 ttgagcaatatatgattatcttgcttgatcttggtacggagacatacaaacaatt 53790445  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 18909212 - 18909160
Alignment:
Q  146 tgaaagttttcagtttgagtgataatatttggagaaaaatttcaagttttcct 198  Q
    ||||||||||||||||||| |||||| |||||||| | ||| |||||||||||    
T  18909212 tgaaagttttcagtttgagggataatgtttggagagatattccaagttttcct 18909160  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 18921200 - 18921106
Alignment:
Q  85 acatttgggtatgataattcaactggaacttataaggtggtgttcttgtgttctagtaaactgaaagttttcagtttgagtgataatatttggag 179  Q
    |||||||| ||||||| |||||  | ||||||||||||||||  ||| | | |||  |   |||||||||||||||||||||||||| |||||||    
T  18921200 acatttggctatgatatttcaaacgaaacttataaggtggtggacttctctgctaacacggtgaaagttttcagtttgagtgataatgtttggag 18921106  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 376
Target Start/End: Complemental strand, 4366733 - 4366665
Alignment:
Q  308 ataaggatattaccgttgagcaattcatgattatctcccttgatcttggtactgagacatacaagcaat 376  Q
    ||||| |||||||||||||||||||  | ||| | || |||||||| ||||| ||||||||||| ||||    
T  4366733 ataagaatattaccgttgagcaatttgttattgtttcgcttgatctgggtacagagacatacaatcaat 4366665  T

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