View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_low_22 (Length: 449)
Name: NF1084_low_22
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_22 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 59 - 420
Target Start/End: Original strand, 17574 - 17935
Alignment:
| Q |
59 |
aaaaaccttttagctataagaatggtagatgagagcaatgatatgctcaccatgtctgccgagctcctggagctgtagctaaaatcaaaagagcggccag |
158 |
Q |
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| T |
17574 |
aaaaaccttttagctataagaatggtagatgagagcaatgatatgctcaccatgtctgccgagctcctggagctgtagctaaaatcaaaagagcgaccag |
17673 |
T |
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| Q |
159 |
taggtccacaggaaactgcaattggcaaaatgctctctggagggacaatatgaccacaagaaaagaaatgcaacttatttggtggtaaccatggaaagag |
258 |
Q |
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| T |
17674 |
taggtccacaggaaactgcaattggcaaaatgctctctggagggacaatatgaccacaagaaaagaaatgcaacttatttggtggtaaccatggaaagag |
17773 |
T |
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| Q |
259 |
tctctcccttgtctcttctattggctgaagtgttccccctactaacacgacagcatgtgcttcatctacaatctattgaaattttcaaagttatcattta |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17774 |
tctctcccttgtctcttctattggctgaagtgttccccctactaacacgacagcatgtgcttcatctacaatctattgaaagtttcaaagttatcattta |
17873 |
T |
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| Q |
359 |
tgttacccattatttgtaaggaaaataaaatagcactataaagtccttttctaattaacaca |
420 |
Q |
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| T |
17874 |
tgttacccattatttgtaagtaaaataaaatagcactataaagtccttttctaattaacaca |
17935 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 50263459 - 50263492
Alignment:
| Q |
31 |
gatatttaaacattaatcaagatcaaataaaaac |
64 |
Q |
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| T |
50263459 |
gatatttaaacattaatcaagatcaaataaaaac |
50263492 |
T |
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