View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1084_low_26 (Length: 440)

Name: NF1084_low_26
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1084_low_26
NF1084_low_26
[»] chr2 (8 HSPs)
chr2 (1-425)||(29541156-29541580)
chr2 (38-149)||(29518136-29518247)
chr2 (45-151)||(29507196-29507302)
chr2 (38-151)||(29535270-29535383)
chr2 (45-149)||(29511018-29511122)
chr2 (45-146)||(29549036-29549137)
chr2 (1-136)||(29505391-29505526)
chr2 (6-146)||(29490478-29490618)
[»] chr4 (1 HSPs)
chr4 (36-145)||(51266291-51266400)
[»] scaffold0186 (1 HSPs)
scaffold0186 (36-69)||(9156-9189)
[»] chr8 (1 HSPs)
chr8 (36-69)||(18874653-18874686)


Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 29541580 - 29541156
Alignment:
Q  1 tccacaatggcaaacctatttgtgagtcacttgtaattgttgagtatattgatgaggtttggaaggatagatctcctttgttgccttctgatccctacca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29541580 tccacaatggcaaacctatttgtgagtcacttgtaattgttgagtatattgatgaggtttggaaggatagatctcctttgttgccttctgatccctacca 29541481  T
Q  101 gagagcacaagctagattttgggctgactatgttgataagaaggtatataataagagtcttcaaattttannnnnnnngactcgtatattttctttatgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| |||    
T  29541480 gagagcacaagctagattttgggctgactatgttgataagaaggtatataataagagtcttcaaattttattttattttactcgtatattttctttctgt 29541381  T
Q  201 agatagacgaaaagacaaataatattggaacccacacacaccagtggagggatggggttcgaacgttgatcatggcgtctgatttaccagttttgatatt 300  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||  ||| |||||||||||||||||||||  ||||||||||||||||||||    
T  29541380 agatagacgaaaagacaaacaatattggaacccacacacacaagtggagggtcgggattcgaacgttgatcatggcgttcgatttaccagttttgatatt 29541281  T
Q  301 tttatcagtcgagttaggacttgtgaactgactcgaatattcaatcttgctaaactatgctttcatcaatctctattttaggttttggtgtggtccatcc 400  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29541280 tttatcagttgagttaggacttgtgaactgactcgtatattcaatcttgctaaactatgctttcatcaatctctattttagattttggtgtggtccatcc 29541181  T
Q  401 aatatttattatttgtttctttaat 425  Q
    |||||||||||| ||||||||||||    
T  29541180 aatatttattatctgtttctttaat 29541156  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 38 - 149
Target Start/End: Complemental strand, 29518247 - 29518136
Alignment:
Q  38 tgttgagtatattgatgaggtttggaaggatagatctcctttgttgccttctgatccctaccagagagcacaagctagattttgggctgactatgttgat 137  Q
    |||| |||||||||||||||||||||| || | |||||||||||||||||||||||| || |||||| ||||||||||||| |||||||| |||||||||    
T  29518247 tgttcagtatattgatgaggtttggaatgagaaatctcctttgttgccttctgatccttatcagagatcacaagctagattctgggctgattatgttgat 29518148  T
Q  138 aagaaggtatat 149  Q
    ||||||||||||    
T  29518147 aagaaggtatat 29518136  T

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Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 29507302 - 29507196
Alignment:
Q  45 tatattgatgaggtttggaaggatagatctcctttgttgccttctgatccctaccagagagcacaagctagattttgggctgactatgttgataagaagg 144  Q
    |||||||||||||||||||| |||| ||||||||| |||||||||||||| || |||| ||||||||||||||| |||||||| ||| ||||||||||||    
T  29507302 tatattgatgaggtttggaatgataaatctcctttcttgccttctgatccatatcagaaagcacaagctagattctgggctgattatattgataagaagg 29507203  T
Q  145 tatataa 151  Q
    |||||||    
T  29507202 tatataa 29507196  T

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Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 29535383 - 29535270
Alignment:
Q  38 tgttgagtatattgatgaggtttggaaggatagatctcctttgttgccttctgatccctaccagagagcacaagctagattttgggctgactatgttgat 137  Q
    |||| |||||||||||||||||||||| || | |||| ||||||||||||||||||| || |||||| |||||||||| || |||||||| |||||||||    
T  29535383 tgttcagtatattgatgaggtttggaatgagaaatcttctttgttgccttctgatccttatcagagatcacaagctaggttctgggctgattatgttgat 29535284  T
Q  138 aagaaggtatataa 151  Q
    ||||||||||||||    
T  29535283 aagaaggtatataa 29535270  T

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Target: chr2; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 29511122 - 29511018
Alignment:
Q  45 tatattgatgaggtttggaaggatagatctcctttgttgccttctgatccctaccagagagcacaagctagattttgggctgactatgttgataagaagg 144  Q
    ||||||||||| |||||||| || | |||||||||||||||||||||||| || |||||| ||||||||||||| |||||||| ||||||||||||||||    
T  29511122 tatattgatgaagtttggaatgagaaatctcctttgttgccttctgatccttatcagagatcacaagctagattctgggctgattatgttgataagaagg 29511023  T
Q  145 tatat 149  Q
    |||||    
T  29511022 tatat 29511018  T

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Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 29549137 - 29549036
Alignment:
Q  45 tatattgatgaggtttggaaggatagatctcctttgttgccttctgatccctaccagagagcacaagctagattttgggctgactatgttgataagaagg 144  Q
    ||||||||||| |||||||| || | |||||||||||||||||||||||| || |||||| ||||||||  |||||||||||| ||| ||||||||||||    
T  29549137 tatattgatgaagtttggaatgagaaatctcctttgttgccttctgatccttatcagagatcacaagctttattttgggctgattatattgataagaagg 29549038  T
Q  145 ta 146  Q
    ||    
T  29549037 ta 29549036  T

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Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 29505526 - 29505391
Alignment:
Q  1 tccacaatggcaaacctatttgtgagtcacttgtaattgttgagtatattgatgaggtttggaaggatagatctcctttgttgccttctgatccctacca 100  Q
    |||| ||||||||| | ||||||||||||||    |||||||| |||||||||||||||||||| |||   |||||||| |||||||||||||| |||||    
T  29505526 tccataatggcaaatccatttgtgagtcactaaatattgttgaatatattgatgaggtttggaatgatcattctccttttttgccttctgatccttacca 29505427  T
Q  101 gagagcacaagctagattttgggctgactatgttga 136  Q
     ||| | ||||||| ||| ||| || ||||||||||    
T  29505426 aagatcccaagctaaattctggactaactatgttga 29505391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 29490478 - 29490618
Alignment:
Q  6 aatggcaaacctatttgtgagtcacttgtaattgttgagtatattgatgaggtttggaaggatagatctcctttgttgccttctgatccctaccagagag 105  Q
    ||||| |||||| ||||||| |||  | | |||||  ||||||| |||||||||||||| |||| | |||| ||  ||||||||||||| ||  ||||||    
T  29490478 aatggaaaacctgtttgtgaatcagctattattgtccagtatatagatgaggtttggaatgataaagctccattcatgccttctgatccttatgagagag 29490577  T
Q  106 cacaagctagattttgggctgactatgttgataagaaggta 146  Q
    | |||||||||||||||| ||| ||| ||||||| ||||||    
T  29490578 ctcaagctagattttgggttgattatattgataaaaaggta 29490618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 145
Target Start/End: Complemental strand, 51266400 - 51266291
Alignment:
Q  36 attgttgagtatattgatgaggtttggaaggatagatctcctttgttgccttctgatccctaccagagagcacaagctagattttgggctgactatgttg 135  Q
    |||||||| || ||||||||||| ||||| |||  | |||| ||| ||||  | |||||  | |||||||| |||||||||||||||||||| | |||||    
T  51266400 attgttgaatacattgatgaggtctggaaagatcaaactccattgctgcccaccgatccacatcagagagctcaagctagattttgggctgattttgttg 51266301  T
Q  136 ataagaaggt 145  Q
    |||| |||||    
T  51266300 ataataaggt 51266291  T

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Target: scaffold0186 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 9189 - 9156
Alignment:
Q  36 attgttgagtatattgatgaggtttggaaggata 69  Q
    |||||||| |||||||||||||||||||||||||    
T  9189 attgttgaatatattgatgaggtttggaaggata 9156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 18874686 - 18874653
Alignment:
Q  36 attgttgagtatattgatgaggtttggaaggata 69  Q
    |||||||| |||||||||||||||||||||||||    
T  18874686 attgttgaatatattgatgaggtttggaaggata 18874653  T

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