View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_low_29 (Length: 427)
Name: NF1084_low_29
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 10 - 399
Target Start/End: Original strand, 40471426 - 40471806
Alignment:
| Q |
10 |
ccacagagagagtgaggctataccactatagtagtagtacacaaagtgatatggagggagtggtgaaaacagagcaaacagaggcatggcacaaaccaaa |
109 |
Q |
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| T |
40471426 |
ccacagagagagtgaggctataccactatagt---agtacacaaagtgatatggagggagtggtgaaaacagaggaaacagaggcatggcacaaaccaaa |
40471522 |
T |
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| Q |
110 |
gaatgggagtgtcttccctgcaaagaaacgttctgtgaagaagatgatatgggatcagtttgttgatcctaagggcaataattccagttccaacacggtt |
209 |
Q |
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| T |
40471523 |
gaatgggagtgtcttccctgcaaagaaacgttctgtgaagaagatgatgtgggatcagtttgttgatcctaagggcaataattccagttccaacacggtt |
40471622 |
T |
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| Q |
210 |
tcgccgccaccgccacctcctcagtcgtcaaggaccaacagtactgtacaccccagctagctctagtttatgctattagtataatcaaatattccttttt |
309 |
Q |
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| T |
40471623 |
tcg------ccgccacctcctcagtcgtcaagggccaacagtactgtacacccgagctagctctagtctatgctattagtattatcaaatattccttttt |
40471716 |
T |
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| Q |
310 |
caaggtttatactattactgatctatctgcattatattgtaaaccagatacatcaataattcaataaacctgaataaggaatatttgttt |
399 |
Q |
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| T |
40471717 |
cagggtttatactattactgatctatctgcattatattataaaccagatacatcaataattcaataaacgtgaataaggaatatttgttt |
40471806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 74 - 220
Target Start/End: Original strand, 40491618 - 40491761
Alignment:
| Q |
74 |
gaaaacagagcaaacagaggcatggcacaaaccaaagaatgggagtgtcttccctgcaaagaaacgttctgtgaagaagatgatatgggatcagtttgtt |
173 |
Q |
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| T |
40491618 |
gaaaacagtggaaacagaggcatggcacaaaccaaagaatggaagtgtattccctccaaagaaacgttctgtgaagaagatgatatgggatcagattgtt |
40491717 |
T |
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| Q |
174 |
gatcctaagggcaataattccagttccaacacggtttcgccgccacc |
220 |
Q |
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| T |
40491718 |
aattacaaggg---taattccagttcaaacacggtttcaccgccacc |
40491761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 40481104 - 40481248
Alignment:
| Q |
70 |
tggtgaaaacagagcaaacagaggcatggcacaaaccaaagaatgggagtgtcttccctgcaaagaaacgttctgtgaagaagatgatatgggatcagtt |
169 |
Q |
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| T |
40481104 |
tggtgaaaacagaggaaacagagccatggcacaaaccaaaaaatgggagtgtcttccctgcaaataaacgttcggtgaagaagatgatgtgggataagat |
40481203 |
T |
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| Q |
170 |
tgttgatcctaagggcaataattccagttccaacacggtttcgccgccacc |
220 |
Q |
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| T |
40481204 |
tgttgatcctaaggg------ttccagttcaaacacggtttcaccaccacc |
40481248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 49 - 164
Target Start/End: Original strand, 40501536 - 40501651
Alignment:
| Q |
49 |
cacaaagtgatatggagggagtggtgaaaacagagcaaacagaggcatggcacaaaccaaagaatgggagtgtcttccctgcaaagaaacgttctgtgaa |
148 |
Q |
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| T |
40501536 |
cacaaagtgatatgcagggagttgtgaaaacagaggaaacagaggcatggcccaaaccgaagaataagagtgtcttccctgcaaagaaacgctctgtgaa |
40501635 |
T |
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| Q |
149 |
gaagatgatatgggat |
164 |
Q |
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| T |
40501636 |
gcaaatgatatgggat |
40501651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 399
Target Start/End: Original strand, 30206538 - 30206596
Alignment:
| Q |
342 |
tatattgtaaaccagatacatcaataattcaataaacctg-aataaggaatatttgttt |
399 |
Q |
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|||||| |||||||||||||||||| ||||||| || ||| || ||||||||||||||| |
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| T |
30206538 |
tatattataaaccagatacatcaattattcaatgaatctgaaaaaaggaatatttgttt |
30206596 |
T |
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