View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1084_low_3 (Length: 814)
Name: NF1084_low_3
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_3 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 570; Significance: 0; HSPs: 22)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 37 - 782
Target Start/End: Complemental strand, 8455609 - 8454864
Alignment:
| Q |
37 |
agcagagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttct |
136 |
Q |
| |
|
||||||||||||||||||| ||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8455609 |
agcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgatcttaaacatgttgtttatgaagcagaccaactattagatgagatttct |
8455510 |
T |
|
| Q |
137 |
accgatgcaatgctaaataatctgaaagctgaatctgaaccacttaccaccaatttattgggcatggtttcagctttaactagaaatccatttgaatcta |
236 |
Q |
| |
|
|| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8455509 |
actgatgcaatgctaaataacctgaaagcagaatctgaaccacttaccaccaatttattgggcttggtttcagctttatctagaaatccatttgaatcta |
8455410 |
T |
|
| Q |
237 |
ggctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtcag |
336 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8455409 |
ggctcaatgaacaactggataaactagaatttcttgcaaagaaaaggaaagagttgagattgggagaaggtccttgtgctaggaatgaaggcttagtcag |
8455310 |
T |
|
| Q |
337 |
ttggaaaccttcacaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgttgataaagaaaaactaataaagtttttactt |
436 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||| |||||||||||| |
|
|
| T |
8455309 |
ttggaaaccttcaaaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtcgagatgttgataaggaaaaattaatcaagtttttactt |
8455210 |
T |
|
| Q |
437 |
gcaggcaatgatagtggcaaccatgttccaataatcagcgtagtcggtttaggagggatggggaaaaccacccttgctaagcttgcgcacaacgacaaca |
536 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| | |||| ||||||| |
|
|
| T |
8455209 |
gcaggcaatgatagtggcaaccaggttccaataatcagcatagtcggtttaggagggatgggtaaaaccacccttgctaagcttgtgtacaatgacaaca |
8455110 |
T |
|
| Q |
537 |
agataaaagatcattttgatcttaaagcatgggtctatgtttttgaatcttttgatgttgttggactcacgaaagcaattcacaagtcatttaattcttc |
636 |
Q |
| |
|
||||||| || |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||| ||||||||||| |
|
|
| T |
8455109 |
agataaaggagcattttgaacttaaagcatgggtctatgtttcagaatcttttgatgttgttggactcaccaaagcaattctcaagtcgtttaattcttc |
8455010 |
T |
|
| Q |
637 |
agcagatggtgaagacttaaatatactacaacataaactccaacacatactaatgggcaagaaatacttgcttgttttagatgatatctggaacggggat |
736 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||| |||||||| |||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
8455009 |
agcagatggtgaagacttaaatctactccaacatcaactccaatacatgctaatgggcaagaaatatttgcttgttttagacgatatctggaacggggat |
8454910 |
T |
|
| Q |
737 |
gcagaatgttgggagctgttacttcttccctttaaccatggatctt |
782 |
Q |
| |
|
|| ||| |||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
8454909 |
gcggaacgttgggagttgttactacttccctttaaccatggatctt |
8454864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 37 - 785
Target Start/End: Complemental strand, 8590684 - 8589936
Alignment:
| Q |
37 |
agcagagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttct |
136 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8590684 |
agcagagataaagcagtaccgaagcaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttct |
8590585 |
T |
|
| Q |
137 |
accgatgcaatgctaaataatctgaaagctgaatctgaaccacttaccaccaatttattgggcatggtttcagctttaactagaaatccatttgaatcta |
236 |
Q |
| |
|
|| ||||||||||||||||| ||||||||| ||||||||||||||| || ||||||||||||| |||||||||||||||||| ||||||||||||| | | |
|
|
| T |
8590584 |
actgatgcaatgctaaataagctgaaagctaaatctgaaccacttagcagcaatttattgggcttggtttcagctttaactacaaatccatttgaaacca |
8590485 |
T |
|
| Q |
237 |
ggctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtcag |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
8590484 |
ggctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccctgtgctagtaacgaaggcttagtcag |
8590385 |
T |
|
| Q |
337 |
ttggaaaccttcacaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgttgataaagaaaaactaataaagtttttactt |
436 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
8590384 |
ttggaaaccttcaaaaaggttgtcatctacagctcttgtggatgagtcgagcatatatggtagagatgttgataagaaaaaactaatcaagtttttactt |
8590285 |
T |
|
| Q |
437 |
gcaggcaatgatagtggcaaccatgttccaataatcagcgtagtcggtttaggagggatggggaaaaccacccttgctaagcttgcgcacaacgacaaca |
536 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
8590284 |
gcaggcaatgatagtggcaaccgcgttccaataatcagcatagtcggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaaca |
8590185 |
T |
|
| Q |
537 |
agataaaagatcattttgatcttaaagcatgggtctatgtttttgaatcttttgatgttgttggactcacgaaagcaattcacaagtcatttaattcttc |
636 |
Q |
| |
|
||||| |||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||| |
|
|
| T |
8590184 |
agatagaagagcattttgagcttaaagcatgggtctatgtttctgaatcttttgatgttgttggactcaccaaagcaattatcaattcatttaattcttc |
8590085 |
T |
|
| Q |
637 |
agcagatggtgaagacttaaatatactacaacataaactccaacacatactaatgggcaagaaatacttgcttgttttagatgatatctggaacggggat |
736 |
Q |
| |
|
|||||||||||||||||| ||| |||| |||||| || | || |||||||||| |||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
8590084 |
agcagatggtgaagacttgaatctactccaacatcaattgcagcacatactaacaggcaagaaatacttgcttgttttagacgatatctggaacgggaat |
8589985 |
T |
|
| Q |
737 |
gcagaatgttgggagctgttacttcttccctttaaccatggatcttctg |
785 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||| ||||| |
|
|
| T |
8589984 |
gcagaatgttgggagcagttactacttccctttaaccatggattttctg |
8589936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 66 - 785
Target Start/End: Complemental strand, 6948195 - 6947476
Alignment:
| Q |
66 |
atgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctaccgatgcaatgctaaataatctgaaagc |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
6948195 |
atgtgaagaagtggcttgatgaacttaaacatgttgtctatgaggcagaccaactgttagatgagatttctactgatgcaatgctaaataagctgaaagc |
6948096 |
T |
|
| Q |
166 |
tgaatctgaaccacttaccaccaatttattgggcatggtttcagctttaactagaaatccatttgaatctaggctcaatgaacaactggataaactagaa |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||| || |||||||||||| |
|
|
| T |
6948095 |
tgaatctgaaccacttaccaccaatttattgggcttggtttcagctttaactacaaatccatttgaatgtaggctcaatgaacagctcgataaactagaa |
6947996 |
T |
|
| Q |
266 |
cttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtcagttggaaaccttcacaaaggttgtcatcta |
365 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
6947995 |
cttcttgcaaagaaaaagaaagagttgggattgggagaaagtccttgcgctagtaatgaaggcttagtcagttggaaaccttcaaaaagattgtcatcta |
6947896 |
T |
|
| Q |
366 |
cagctctcgtggatgagtcgagcatatatggtagagatgttgataaagaaaaactaataaagtttttacttgcaggcaatgatagtggcaaccatgttcc |
465 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||||||||| |||||| || || |||| ||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
6947895 |
cagctctcatggatgagtcaaccatatatggtagagatgatgataaggacaagttaatcaagtttttacttgcaggcaatgacagtggcaaccaggttcc |
6947796 |
T |
|
| Q |
466 |
aataatcagcgtagtcggtttaggagggatggggaaaaccacccttgctaagcttgcgcacaacgacaacaagataaaagatcattttgatcttaaagca |
565 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||| | || |||||||| |||||| || |
|
|
| T |
6947795 |
aataatcagcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaatgacaacaagatagaggagcattttgaccttaaaaca |
6947696 |
T |
|
| Q |
566 |
tgggtctatgtttttgaatcttttgatgttgttggactcacgaaagcaattcacaagtcatttaattcttcagcagatggtgaagacttaaatatactac |
665 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||| |||| | |
|
|
| T |
6947695 |
tgggtctacgtttcagaatcttttgatgttgttggactcaccaaagcaattctcaagtcatttaattcttcagcagatggtgaagacttgaatctactcc |
6947596 |
T |
|
| Q |
666 |
aacataaactccaacacatactaatgggcaagaaatacttgcttgttttagatgatatctggaacggggatgcagaatgttgggagctgttacttcttcc |
765 |
Q |
| |
|
||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6947595 |
aacatcaactccaacacatgttaatgggaaagaaatacttgcttgttttagatgatatctggaacggggatgcagaatgttgggagctgttacttcttcc |
6947496 |
T |
|
| Q |
766 |
ctttaaccatggatcttctg |
785 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6947495 |
ctttaaccatggatcttctg |
6947476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 37 - 785
Target Start/End: Complemental strand, 6736945 - 6736197
Alignment:
| Q |
37 |
agcagagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttct |
136 |
Q |
| |
|
||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
6736945 |
agcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttctttatgaagcagaccaactattggatgagatttct |
6736846 |
T |
|
| Q |
137 |
accgatgcaatgctaaataatctgaaagctgaatctgaaccacttaccaccaatttattgggcatggtttcagctttaactagaaatccatttgaatcta |
236 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| || |
|
|
| T |
6736845 |
actgatgcaatgctaaataaggtgaaagctgaatctgaaccacttaccaccaatttattgggcttggtttcagctttaactacaaatccatttgaatgta |
6736746 |
T |
|
| Q |
237 |
ggctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtcag |
336 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
6736745 |
ggctcaatgaacagctcgataaactagaacttcttgcaaagcaaaagaaagatttgagattgggagaaggtcctagtgctagtaatgaaggcttagtcag |
6736646 |
T |
|
| Q |
337 |
ttggaaaccttcacaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgttgataaagaaaaactaataaagtttttactt |
436 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||| ||||||||||| |||||||||||| |
|
|
| T |
6736645 |
ttggaaaccttcaaaaaggttgtcatctacagctctcctggatgagtcaagcatatatggtagagatgatgataaggaaaaactaatcaagtttttactt |
6736546 |
T |
|
| Q |
437 |
gcaggcaatgatagtggcaaccatgttccaataatcagcgtagtcggtttaggagggatggggaaaaccacccttgctaagcttgcgcacaacgacaaca |
536 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
6736545 |
acaggcaatgacagtggcaaccaggttccaataattagcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaaca |
6736446 |
T |
|
| Q |
537 |
agataaaagatcattttgatcttaaagcatgggtctatgtttttgaatcttttgatgttgttggactcacgaaagcaattcacaagtcatttaattcttc |
636 |
Q |
| |
|
||||||| | |||||||| |||||||||||||||||||||| |||||||| |||||| |||||||||| |||||||||| ||||||||||||| |||| |
|
|
| T |
6736445 |
agataaagaagcattttgaacttaaagcatgggtctatgtttcagaatctttcgatgtttttggactcaccaaagcaattctcaagtcatttaatccttc |
6736346 |
T |
|
| Q |
637 |
agcagatggtgaagacttaaatatactacaacataaactccaacacatactaatgggcaagaaatacttgcttgttttagatgatatctggaacggggat |
736 |
Q |
| |
|
|||||||||||||||||| ||| ||| |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
6736345 |
agcagatggtgaagacttgaatcaactccaacatcaactccaacacatgttaatgggaaagaaatacttgcttgttttagatgatatctggaatgggagt |
6736246 |
T |
|
| Q |
737 |
gcagaatgttgggagctgttacttcttccctttaaccatggatcttctg |
785 |
Q |
| |
|
| ||||| |||||||| | |||| ||||| ||||||||||||||||||| |
|
|
| T |
6736245 |
gtagaatattgggagcagctactacttccgtttaaccatggatcttctg |
6736197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 37 - 785
Target Start/End: Original strand, 6553512 - 6554260
Alignment:
| Q |
37 |
agcagagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttct |
136 |
Q |
| |
|
||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6553512 |
agcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaggcagaccaactattagatgagatttct |
6553611 |
T |
|
| Q |
137 |
accgatgcaatgctaaataatctgaaagctgaatctgaaccacttaccaccaatttattgggcatggtttcagctttaactagaaatccatttgaatcta |
236 |
Q |
| |
|
|| ||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| || |
|
|
| T |
6553612 |
actgatgcaatgataaataagcaaaaagctgaatctgaaccacttaccaccaatttattgggtttcgtttcagctttaactacaaatccatttgaatgta |
6553711 |
T |
|
| Q |
237 |
ggctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtcag |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
6553712 |
ggctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaagatttgagattgggagaaggtcctagtgctagtaatgaaggcttagtcag |
6553811 |
T |
|
| Q |
337 |
ttggaaaccttcacaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgttgataaagaaaaactaataaagtttttactt |
436 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||| |||| |||||||||||| |
|
|
| T |
6553812 |
ttggaaaccttcaaaaaggttgtcgtctacagctctcgtggatgagtcaagcatatatggtagggatgttgataaggaaaaattaatcaagtttttactt |
6553911 |
T |
|
| Q |
437 |
gcaggcaatgatagtggcaaccatgttccaataatcagcgtagtcggtttaggagggatggggaaaaccacccttgctaagcttgcgcacaacgacaaca |
536 |
Q |
| |
|
| ||||||||| ||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
6553912 |
gaaggcaatgacggtggcaaccgggttccaataatcagcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaaca |
6554011 |
T |
|
| Q |
537 |
agataaaagatcattttgatcttaaagcatgggtctatgtttttgaatcttttgatgttgttggactcacgaaagcaattcacaagtcatttaattcttc |
636 |
Q |
| |
|
||||||| | |||||||| |||||||||||||||||||||| |||||||| |||||| |||||||||| |||||||||| ||||||||||||| |||| |
|
|
| T |
6554012 |
agataaagaagcattttgaacttaaagcatgggtctatgtttcagaatctttcgatgtttttggactcaccaaagcaattctcaagtcatttaatccttc |
6554111 |
T |
|
| Q |
637 |
agcagatggtgaagacttaaatatactacaacataaactccaacacatactaatgggcaagaaatacttgcttgttttagatgatatctggaacggggat |
736 |
Q |
| |
|
||||||||||||| |||| || ||| |||||| |||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||| ||| | |
|
|
| T |
6554112 |
agcagatggtgaatacttggatcaactccaacatcaactccaagacatgctaatgggaaagaaatacttgcttgttttagatgatatatggaatgggagt |
6554211 |
T |
|
| Q |
737 |
gcagaatgttgggagctgttacttcttccctttaaccatggatcttctg |
785 |
Q |
| |
|
| ||||| |||||||| | |||| ||||| ||||||||||||||||||| |
|
|
| T |
6554212 |
gtagaatattgggagcagctactacttccgtttaaccatggatcttctg |
6554260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 37 - 782
Target Start/End: Original strand, 6479056 - 6479801
Alignment:
| Q |
37 |
agcagagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttct |
136 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6479056 |
agcagagataaagcagtaccaaatcatatatgtgaagaagtggcttgataaacttaaacatgttgtttatgaagcagaccaactattagatgagatatct |
6479155 |
T |
|
| Q |
137 |
accgatgcaatgctaaataatctgaaagctgaatctgaaccacttaccaccaatttattgggcatggtttcagctttaactagaaatccatttgaatcta |
236 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6479156 |
actgatgcaatgctaaataagctgaaagctgaatctgaaccacttaccaccaatttattgggcgtggtttcagctttaactacaaatccatttgaatcta |
6479255 |
T |
|
| Q |
237 |
ggctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtcag |
336 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||||| | ||||||||||| ||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
6479256 |
ggctcaatgaacaactggataaactagaatttcttgcaatgcaaaagtaggtgttgggattggcagaaggtcccagtgctagtaatgaaggcttagtcag |
6479355 |
T |
|
| Q |
337 |
ttggaaaccttcacaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgttgataaagaaaaactaataaagtttttactt |
436 |
Q |
| |
|
||||||||||||| |||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| || ||| |||| || || ||||||||| |
|
|
| T |
6479356 |
ttggaaaccttcaaaaagattgtcatctacggctctcgtggatgagtccagcatatatggcagagatgttgacaaggaagaacttatcaaatttttactt |
6479455 |
T |
|
| Q |
437 |
gcaggcaatgatagtggcaaccatgttccaataatcagcgtagtcggtttaggagggatggggaaaaccacccttgctaagcttgcgcacaacgacaaca |
536 |
Q |
| |
|
||||||||||| ||||| | ||| ||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||| | ||||| |||||| |
|
|
| T |
6479456 |
gcaggcaatgacagtggaacccaggttccgataatcagcatagttggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacaacaaca |
6479555 |
T |
|
| Q |
537 |
agataaaagatcattttgatcttaaagcatgggtctatgtttttgaatcttttgatgttgttggactcacgaaagcaattcacaagtcatttaattcttc |
636 |
Q |
| |
|
||||| | || |||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||| ||||||||||||| |||| |
|
|
| T |
6479556 |
agatagaggaacattttgaacttaaagcatgggtctatgtttcagaatcttatgatgttgttggactcaccaaagcaattctcaagtcatttaatccttc |
6479655 |
T |
|
| Q |
637 |
agcagatggtgaagacttaaatatactacaacataaactccaacacatactaatgggcaagaaatacttgcttgttttagatgatatctggaacggggat |
736 |
Q |
| |
|
||||||||||||| |||| || ||| |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
6479656 |
agcagatggtgaatacttggatcaactccaacatcaactccaacacatgttaatgggaaagaaatacttgcttgttttagatgatatctggaatgggaat |
6479755 |
T |
|
| Q |
737 |
gcagaatgttgggagctgttacttcttccctttaaccatggatctt |
782 |
Q |
| |
|
| ||| | |||||||| |||||| ||||| |||||||||||||||| |
|
|
| T |
6479756 |
gtagagtattgggagcagttactacttccatttaaccatggatctt |
6479801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 37 - 785
Target Start/End: Original strand, 6519236 - 6519984
Alignment:
| Q |
37 |
agcagagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttct |
136 |
Q |
| |
|
||||||| | ||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6519236 |
agcagagctgaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttct |
6519335 |
T |
|
| Q |
137 |
accgatgcaatgctaaataatctgaaagctgaatctgaaccacttaccaccaatttattgggcatggtttcagctttaactagaaatccatttgaatcta |
236 |
Q |
| |
|
|| ||||||||| || |||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
6519336 |
actgatgcaatgatatataagttgaaagctgaatctgaaccacttaccaccaatttatttggctgggtttcagctttaactggaaatccatttgaatcta |
6519435 |
T |
|
| Q |
237 |
ggctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtcag |
336 |
Q |
| |
|
|||||||| ||| |||||| | ||||||| ||||||| | |||| ||||| | ||||||||| || |||||||||||||| ||||||||||||||||| |
|
|
| T |
6519436 |
ggctcaataaactactggagacactagaatctcttgcacaacaaacgaaaaggctgggattggaagttggtccttgtgctagtaatgaaggcttagtcag |
6519535 |
T |
|
| Q |
337 |
ttggaaaccttcacaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgttgataaagaaaaactaataaagtttttactt |
436 |
Q |
| |
|
||||||||||||| || | |||||||||||| |||| ||||||||||| ||| ||| ||||||||||||| |||| ||||||||| | || |||||||| |
|
|
| T |
6519536 |
ttggaaaccttcaaaacgattgtcatctacatctcttgtggatgagtcaagcttatgtggtagagatgttcataaggaaaaactagtgaaacttttactt |
6519635 |
T |
|
| Q |
437 |
gcaggcaatgatagtggcaaccatgttccaataatcagcgtagtcggtttaggagggatggggaaaaccacccttgctaagcttgcgcacaacgacaaca |
536 |
Q |
| |
|
|||| |||| ||||| ||||| ||||||||||||||| |||| ||||||||||| ||||| ||||||||||||||| | | || |||| ||||||| |
|
|
| T |
6519636 |
gcagacaataccagtggtaaccaggttccaataatcagcatagtgggtttaggaggaatgggtaaaaccacccttgctcaacatgtctacaatgacaaca |
6519735 |
T |
|
| Q |
537 |
agataaaagatcattttgatcttaaagcatgggtctatgtttttgaatcttttgatgttgttggactcacgaaagcaattcacaagtcatttaattcttc |
636 |
Q |
| |
|
|| ||| | |||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||| ||||||||||||| |||| |
|
|
| T |
6519736 |
tgacaaagaagcattttgaacttaaagcatgggtctatgtttcagaatcttttgatgatgttggactcaccaaagcaattctcaagtcatttaatccttc |
6519835 |
T |
|
| Q |
637 |
agcagatggtgaagacttaaatatactacaacataaactccaacacatactaatgggcaagaaatacttgcttgttttagatgatatctggaacggggat |
736 |
Q |
| |
|
||||||||||||| |||| || ||| |||||| ||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
6519836 |
agcagatggtgaatacttggatcaactccaacatcaactccaacacctgctaatggcaaagaaatacttgcttgttttagatgatatctggaatgggaag |
6519935 |
T |
|
| Q |
737 |
gcagaatgttgggagctgttacttcttccctttaaccatggatcttctg |
785 |
Q |
| |
|
| ||||| ||||| |||||| ||||| |||||||||||||||||| |
|
|
| T |
6519936 |
gtagaatactgggataagttactacttccgcttaaccatggatcttctg |
6519984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 467 - 785
Target Start/End: Original strand, 6448286 - 6448604
Alignment:
| Q |
467 |
ataatcagcgtagtcggtttaggagggatggggaaaaccacccttgctaagcttgcgcacaacgacaacaagataaaagatcattttgatcttaaagcat |
566 |
Q |
| |
|
||||||||| |||| ||| | || |||||||| || ||||| |||||||||||| | |||| |||||| |||||| || |||||||| |||||| | | |
|
|
| T |
6448286 |
ataatcagcatagtgggtctgggtgggatgggtaagaccacttttgctaagcttgtgtacaatcacaacatgataaaggagcattttgaacttaaatctt |
6448385 |
T |
|
| Q |
567 |
gggtctatgtttttgaatcttttgatgttgttggactcacgaaagcaattcacaagtcatttaattcttcagcagatggtgaagacttaaatatactaca |
666 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||| ||| |||| || |
|
|
| T |
6448386 |
gggtctatgtttcagaatattttgatgttgttggactcaccaaagcaatcctaaagtcatttaattcttcagcagatggtgaagacttgaatctactcca |
6448485 |
T |
|
| Q |
667 |
acataaactccaacacatactaatgggcaagaaatacttgcttgttttagatgatatctggaacggggatgcagaatgttgggagctgttacttcttccc |
766 |
Q |
| |
|
|||| |||| ||||||||||||| | ||||||||||| ||||||||||| || |||||||||||| |||||||| ||||||||| | |||| ||||| |
|
|
| T |
6448486 |
acatgaactgcaacacatactaacaagaaagaaatactttcttgttttagacgacatctggaacgggaatgcagaacgttgggagcaggtactgcttccg |
6448585 |
T |
|
| Q |
767 |
tttaaccatggatcttctg |
785 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
6448586 |
tttaaccatggatcttctg |
6448604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 310 - 781
Target Start/End: Complemental strand, 5299413 - 5298942
Alignment:
| Q |
310 |
ttgtgctaggaatgaaggcttagtcagttggaaaccttcacaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgttgat |
409 |
Q |
| |
|
||||||||| |||||||| |||| |||||||| ||| | |||| ||| || |||| || | |||||||| |||||||||||||| ||||||| ||| |
|
|
| T |
5299413 |
ttgtgctagtaatgaaggtgaagtcggttggaaagctttaaaaagattgccaagtacatctttggtggatgaatcgagcatatatggcagagatggtgac |
5299314 |
T |
|
| Q |
410 |
aaagaaaaactaataaagtttttacttgcaggcaatgatagtggcaaccatgttccaataatcagcgtagtcggtttaggagggatggggaaaaccaccc |
509 |
Q |
| |
|
||||| || ||| || ||||||||| | | || ||| |||| ||| ||| |||||||||||| |||| ||| |||| || ||||| |||||||||| |
|
|
| T |
5299313 |
aaagaggaagtaaccaaatttttactttccgacatagatgctggcgaccgtgtaccaataatcagcatagtgggtctaggtggaatgggaaaaaccaccc |
5299214 |
T |
|
| Q |
510 |
ttgctaagcttgcgcacaacgacaacaagataaaagatcattttgatcttaaagcatgggtctatgtttttgaatcttttgatgttgttggactcacgaa |
609 |
Q |
| |
|
||||| | |||| | |||| |||||| |||| | | || ||||| || ||||| ||||||||||||| ||| ||||| ||||||||||||| || || |
|
|
| T |
5299213 |
ttgctcaacttgtgtacaataacaacatgatacagaaacagtttgaactaaaagcctgggtctatgtttcggaaacttttaatgttgttggacttaccaa |
5299114 |
T |
|
| Q |
610 |
agcaattcacaagtcatttaattcttcagcagatggtgaagacttaaatatactacaacataaactccaacacatactaatgggcaagaaatacttgctt |
709 |
Q |
| |
|
||||||| ||||||| | ||||| ||||||||||||||||| ||| |||| |||||| || | || || | ||||| || |||||||| ||||| |
|
|
| T |
5299113 |
agcaattttacggtcatttcactcttcggcagatggtgaagacttgaatctactccaacatcaattgcagcagagactaacaggaaagaaatatctgctt |
5299014 |
T |
|
| Q |
710 |
gttttagatgatatctggaacggggatgcagaatgttgggagctgttacttcttccctttaaccatggatct |
781 |
Q |
| |
|
||||| |||||| |||||||||| ||| ||||||||||||| ||||| ||||| |||||| |||||||| |
|
|
| T |
5299013 |
gttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatct |
5298942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 452 - 766
Target Start/End: Original strand, 4388426 - 4388740
Alignment:
| Q |
452 |
ggcaaccatgttccaataatcagcgtagtcggtttaggagggatggggaaaaccacccttgctaagcttgcgcacaacgacaacaagataaaagatcatt |
551 |
Q |
| |
|
|||||||| || |||||||||||| |||| ||| | || || ||||| || ||||| |||||| |||||| | |||| ||| || ||| ||||| |||| |
|
|
| T |
4388426 |
ggcaaccaagtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaatgaccgcaggatgaaagagcatt |
4388525 |
T |
|
| Q |
552 |
ttgatcttaaagcatgggtctatgtttttgaatcttttgatgttgttggactcacgaaagcaattcacaagtcatttaattcttcagcagatggtgaaga |
651 |
Q |
| |
|
|||| |||||||| |||||||| |||| ||| ||||||||||||||||||| || |||||||||| | ||||||| | |||||| || ||| |||||| |
|
|
| T |
4388526 |
ttgaacttaaagcttgggtctacgtttcagaaacttttgatgttgttggacttaccaaagcaattctgaggtcatttcactcttcaacacatgctgaaga |
4388625 |
T |
|
| Q |
652 |
cttaaatatactacaacataaactccaacacatactaatgggcaagaaatacttgcttgttttagatgatatctggaacggggatgcagaatgttgggag |
751 |
Q |
| |
|
|| ||| | || |||||| || | || |||| ||||| || |||||||| |||||||||||||||||| ||||||| ||| ||| ||| |||||||| |
|
|
| T |
4388626 |
gtttaatctgctccaacatcaattgcagcacaaactaactggtaagaaatatttgcttgttttagatgatgtctggaatgggaatgaggaaggttgggag |
4388725 |
T |
|
| Q |
752 |
ctgttacttcttccc |
766 |
Q |
| |
|
| ||||| |||||| |
|
|
| T |
4388726 |
cgcttactacttccc |
4388740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 41 - 781
Target Start/End: Complemental strand, 5251117 - 5250380
Alignment:
| Q |
41 |
gagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctaccg |
140 |
Q |
| |
|
||||| ||||| ||| ||||||| || |||||||||||||||||||| ||||||||| || ||||| | ||||| || |||||||||||| | || | |
|
|
| T |
5251117 |
gagatgaagcaataccaaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactg |
5251018 |
T |
|
| Q |
141 |
atgcaatgctaaataatctgaaagctgaatctgaaccacttaccaccaatttattgggcatggtttcagctttaactagaaatccatttgaatctaggct |
240 |
Q |
| |
|
||||| || || || ||||||||||||||| |||| ||| | ||| |||| | | | ||||| |||| ||| |||||||||||||||||| | |
|
|
| T |
5251017 |
atgcaccactgaagaagctgaaagctgaatctcaaccttctactagcaaggtattcgacttcttttcatctttcact---aatccatttgaatctaggat |
5250921 |
T |
|
| Q |
241 |
caatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtcagttgg |
340 |
Q |
| |
|
|| ||| || || || |||||| ||||||||||||||||| | | | | |||||| | | | ||| |||||| | |||||| || |||||| |
|
|
| T |
5250920 |
taaagaattgctagagaagctagaatttcttgcaaagcaaaaggatatgctcggattgaaacatgaggcttttgctagtagtgaaggtggcgttagttgg |
5250821 |
T |
|
| Q |
341 |
aaaccttcacaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgttgataaagaaaaactaataaagtttttacttgcag |
440 |
Q |
| |
|
||||| | | | || || || |||||||| | |||||||| |||||||||||||||||||||| ||| || || | |||| | |||||||| | | |
|
|
| T |
5250820 |
aaacccttagatagatttccaactacagctttggtggatgaatcgagcatatatggtagagatggtgacaaggaggagttaattgattttttactgtctg |
5250721 |
T |
|
| Q |
441 |
gcaatgatagtggcaaccatgttccaataatcagcgtagtcggtttaggagggatggggaaaaccacccttgctaagcttgcgcacaacgacaacaagat |
540 |
Q |
| |
|
|| | |||||||| ||||| |||||||||||| |||| ||| | || || ||||| || ||||| |||||| |||||||| |||||||| ||| ||| |
|
|
| T |
5250720 |
acataaacagtggcaatcatgtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgcgtacaacgaccacaggat |
5250621 |
T |
|
| Q |
541 |
aaaagatcattttgatcttaaagcatgggtctatgtttttgaatcttttgatgttgttggactcacgaaagcaattcacaagtcatttaattcttcagca |
640 |
Q |
| |
|
| || |||||||| |||||||| ||||||||||||| ||| |||||||||||||||||||||| ||||||||| | |||||| | |||||| || |
|
|
| T |
5250620 |
gcaggagcattttgaacttaaagcttgggtctatgtttcagaaacttttgatgttgttggactcaccaaagcaattatgagctcatttcactcttcaaca |
5250521 |
T |
|
| Q |
641 |
gatggtgaagacttaaatatactacaacataaactccaacacatactaatgggcaagaaatacttgcttgttttagatgatatctggaacggggatgcag |
740 |
Q |
| |
|
|||| |||||| || ||| |||| ||| || |||| | || | ||||| || |||||||| | |||||||| |||||| ||||||| ||| || | |
|
|
| T |
5250520 |
gatgctgaagagttcaatctactccaatatcaactgcggcagagactaacaggtaagaaatatcttcttgttttggatgatgtctggaatgggagtgtgg |
5250421 |
T |
|
| Q |
741 |
aatgttgggagctgttacttcttccctttaaccatggatct |
781 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||||||| |
|
|
| T |
5250420 |
aatgttgggagcgcttactacttcccttatgccatggatct |
5250380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 374 - 783
Target Start/End: Original strand, 8568359 - 8568768
Alignment:
| Q |
374 |
gtggatgagtcgagcatatatggtagagatgttgataaagaaaaactaataaagtttttacttgcaggcaatgatagtggcaaccatgttccaataatca |
473 |
Q |
| |
|
|||||||| || |||||||||||||||||| ||||||| | ||| |||| || | ||| ||| || ||||||| ||||||||||||| |||| | |
|
|
| T |
8568359 |
gtggatgaatcttgcatatatggtagagatgatgataaaaataaaataatcaattatttgcttttagacaatgatggtggcaaccatgtgagcgtaataa |
8568458 |
T |
|
| Q |
474 |
gcgtagtcggtttaggagggatggggaaaaccacccttgctaagcttgcgcacaacgacaacaagataaaagatcattttgatcttaaagcatgggtcta |
573 |
Q |
| |
|
| | || ||| |||| |||||||| || |||||||||||| |||| |||| ||| |||||||| | | || ||||| |||||||| |||||| | |
|
|
| T |
8568459 |
gtattgtgggtctaggtgggatgggtaagaccacccttgctcgacttgtctacaatgaccacaagatagagaagcaatttgaacttaaagcttgggtcca |
8568558 |
T |
|
| Q |
574 |
tgtttttgaatcttttgatgttgttggactcacgaaagcaattcacaagtcatttaattcttcagcagatggtgaagacttaaatatactacaacataaa |
673 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||| |||||| || ||||||| |||| ||| | || ||||||||||| || ||| || | || |
|
|
| T |
8568559 |
tgtttcagaatcttttgatgttgttggactcaccaaaacaattctcaggtcatttcattcctcatctgacggtgaagacttggatccactcaaatgtcaa |
8568658 |
T |
|
| Q |
674 |
ctccaacacatactaatgggcaagaaatacttgcttgttttagatgatatctggaacggggatgcagaatgttgggagctgttacttcttccctttaacc |
773 |
Q |
| |
|
|| ||||| ||| ||| ||||| || | ||||||||| |||||||||||||||| ||| ||| |||| |||||||| |||||| ||||| ||||| | |
|
|
| T |
8568659 |
ctacaacagatattaacaggcaaaaagtttttgcttgttctagatgatatctggaatgggaatgaggaattttgggagcagttactacttccatttaatc |
8568758 |
T |
|
| Q |
774 |
atggatcttc |
783 |
Q |
| |
|
|||||||||| |
|
|
| T |
8568759 |
atggatcttc |
8568768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 452 - 781
Target Start/End: Complemental strand, 5268596 - 5268267
Alignment:
| Q |
452 |
ggcaaccatgttccaataatcagcgtagtcggtttaggagggatggggaaaaccacccttgctaagcttgcgcacaacgacaacaagataaaagatcatt |
551 |
Q |
| |
|
||||||||||| |||||||||||| |||| ||| | || || ||||| || |||||||||||| | || | | |||| ||| | | ||| || || ||| |
|
|
| T |
5268596 |
ggcaaccatgtaccaataatcagcatagtgggtctcggtggaatgggtaagaccacccttgctcaactcgtgtacaatgaccaaaggatcaaggagaatt |
5268497 |
T |
|
| Q |
552 |
ttgatcttaaagcatgggtctatgtttttgaatcttttgatgttgttggactcacgaaagcaattcacaagtcatttaattcttcagcagatggtgaaga |
651 |
Q |
| |
|
|| | | |||||| ||||||||||||| ||| |||||||| | | ||||| || |||||||||| | ||||||| | | |||||||||||||||||| |
|
|
| T |
5268496 |
ttaaacataaagcctgggtctatgtttcggaaatttttgatggtctcggacttactaaagcaattctgaggtcatttgacttttcagcagatggtgaaga |
5268397 |
T |
|
| Q |
652 |
cttaaatatactacaacataaactccaacacatactaatgggcaagaaatacttgcttgttttagatgatatctggaacggggatgcagaatgttgggag |
751 |
Q |
| |
|
||| ||| |||| |||||| | | || || ||||| |||||||||||||||||| |||| |||||| ||||||| ||| || ||||||||||||| |
|
|
| T |
5268396 |
cttgaatttactccaacatcagttgcagcagggactaacaggcaagaaatacttgctttttttggatgatgtctggaatgggagtgaagaatgttgggag |
5268297 |
T |
|
| Q |
752 |
ctgttacttcttccctttaaccatggatct |
781 |
Q |
| |
|
| ||| | |||||||| |||||||||| |
|
|
| T |
5268296 |
cgcttattacttcccttattccatggatct |
5268267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 49 - 177
Target Start/End: Complemental strand, 5281594 - 5281466
Alignment:
| Q |
49 |
gcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctaccgatgcaatg |
148 |
Q |
| |
|
||||||| |||||| |||||| ||||||||||||||||| |||||||||| ||| ||||| ||||||||| | || ||||||||| |||| || ||| |
|
|
| T |
5281594 |
gcagtacaaaagcacatatgtaaagaagtggcttgatgatcttaaacatgctgtatatgaggcagaccaaattttcgatgagattgctactgacgcacaa |
5281495 |
T |
|
| Q |
149 |
ctaaataatctgaaagctgaatctgaacc |
177 |
Q |
| |
|
|| ||||| ||||||| |||||||||||| |
|
|
| T |
5281494 |
ctgaataagctgaaagatgaatctgaacc |
5281466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 8479979 - 8480045
Alignment:
| Q |
70 |
gaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttct |
136 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
8479979 |
gaagaattgacttgatgaacttaaacatgttgtttatgaagcaaaccaactattacatgagatttct |
8480045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 41 - 133
Target Start/End: Complemental strand, 5299679 - 5299587
Alignment:
| Q |
41 |
gagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatt |
133 |
Q |
| |
|
|||| |||||| ||| ||||| ||| |||||||||||||||| ||| |||||||||||||| ||||||||||| ||||| || ||||||||| |
|
|
| T |
5299679 |
gagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt |
5299587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 645 - 785
Target Start/End: Original strand, 6591013 - 6591153
Alignment:
| Q |
645 |
gtgaagacttaaatatactacaacataaactccaacacatactaatgggcaagaaatacttgcttgttttagatgatatctggaacggggatgcagaatg |
744 |
Q |
| |
|
||||||||||| | ||||| |||| | || | ||||| ||| ||| |||||||||||||||||||||||||| ||||||| | ||| | || ||||| |
|
|
| T |
6591013 |
gtgaagacttagaaatactccaacgtcaattacaacagatagtaactggcaagaaatacttgcttgttttagacaatatctgtagcggaaaagcggaatg |
6591112 |
T |
|
| Q |
745 |
ttgggagctgttacttcttccctttaaccatggatcttctg |
785 |
Q |
| |
|
||||||| || |||| ||||| |||| |||||||||||||| |
|
|
| T |
6591113 |
ttgggagatgctactacttccgtttagccatggatcttctg |
6591153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 525 - 731
Target Start/End: Complemental strand, 7750494 - 7750285
Alignment:
| Q |
525 |
acaacgacaacaagataaaagatcattttgatcttaaagcatgggtctatgtttttgaatcttttgatgttgttggactcacgaaagcaattcacaagtc |
624 |
Q |
| |
|
|||||||| |||||||| | || || ||||| |||||||| ||||||||||||| |||||||||||| ||||| ||||| ||||||||| || | |
|
|
| T |
7750494 |
acaacgaccacaagatacatgagcaatttgaacttaaagcttgggtctatgtttcagaatcttttgatcttgttcatctcacccaagcaattctcaggga |
7750395 |
T |
|
| Q |
625 |
atttaattcttcag---cagatggtgaagacttaaatatactacaacataaactccaacacatactaatgggcaagaaatacttgcttgttttagatgat |
721 |
Q |
| |
|
|||| ||||||||| | || |||||||| | | ||||| |||| | || | ||||| | |||| |||||||| ||||||||||||||||| || |
|
|
| T |
7750394 |
atttcattcttcagaaacgtatagtgaagacatggaaatactccaacgtcaattgcaacagagactagctggcaagaagtacttgcttgttttagacaat |
7750295 |
T |
|
| Q |
722 |
atctggaacg |
731 |
Q |
| |
|
|||||||||| |
|
|
| T |
7750294 |
atctggaacg |
7750285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 625 - 784
Target Start/End: Complemental strand, 8471928 - 8471769
Alignment:
| Q |
625 |
atttaattcttcagcagatggtgaagacttaaatatactacaacataaactccaacacatactaatgggcaagaaatacttgcttgttttagatgatatc |
724 |
Q |
| |
|
|||| ||||||| ||| || |||||||||| ||||||| |||| |||| ||| | ||| ||||||||||||| || | |||||| | |||||| || |
|
|
| T |
8471928 |
atttgattcttctgcaaatagtgaagacttggatatactccaacggcaactgcaagaaatattaatgggcaagaactatctacttgttgtggatgatgtc |
8471829 |
T |
|
| Q |
725 |
tggaacggggatgcagaatgttgggagctgttacttcttccctttaaccatggatcttct |
784 |
Q |
| |
|
||||| | ||| ||| |||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
8471828 |
tggaaactgaatgaggaaagttgggagaagttactacttccctttaaccatggatcttct |
8471769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 4388024 - 4388080
Alignment:
| Q |
41 |
gagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacat |
97 |
Q |
| |
|
||||| ||||||||| ||||||| | |||||||||||||||||||| ||||||||| |
|
|
| T |
4388024 |
gagatgaagcagtaccaaagcatgtccgtgaagaagtggcttgatgatcttaaacat |
4388080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 5269004 - 5268948
Alignment:
| Q |
41 |
gagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacat |
97 |
Q |
| |
|
||||| ||||||| | ||||||| || |||||||||||||||||||| ||||||||| |
|
|
| T |
5269004 |
gagatgaagcagttccaaagcatgtacgtgaagaagtggcttgatgatcttaaacat |
5268948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 491 - 598
Target Start/End: Complemental strand, 5281185 - 5281078
Alignment:
| Q |
491 |
gggatggggaaaaccacccttgctaagcttgcgcacaacgacaacaagataaaagatcattttgatcttaaagcatgggtctatgtttttgaatcttttg |
590 |
Q |
| |
|
|||||||| || |||||||||||| |||||| | | |||||| | | || ||||| |||||||| | |||||| ||||||||||||| |||| ||||| |
|
|
| T |
5281185 |
gggatgggtaagaccacccttgctgagcttgtgtataacgacgatagaattaaagagcattttgaacataaagcttgggtctatgtttcagaattttttg |
5281086 |
T |
|
| Q |
591 |
atgttgtt |
598 |
Q |
| |
|
||| |||| |
|
|
| T |
5281085 |
atgctgtt |
5281078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 37 - 785
Target Start/End: Original strand, 6551 - 7299
Alignment:
| Q |
37 |
agcagagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttct |
136 |
Q |
| |
|
||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6551 |
agcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaggcagaccaactattagatgagatttct |
6650 |
T |
|
| Q |
137 |
accgatgcaatgctaaataatctgaaagctgaatctgaaccacttaccaccaatttattgggcatggtttcagctttaactagaaatccatttgaatcta |
236 |
Q |
| |
|
|| ||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| || |
|
|
| T |
6651 |
actgatgcaatgataaataagcaaaaagctgaatctgaaccacttaccaccaatttattgggtttggtttcagctttaactacaaatccatttgaatgta |
6750 |
T |
|
| Q |
237 |
ggctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtcag |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
6751 |
ggctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaagatttgagattgggagaaggtcctagtgctagtaatgaaggcttagtcag |
6850 |
T |
|
| Q |
337 |
ttggaaaccttcacaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgttgataaagaaaaactaataaagtttttactt |
436 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||| |||| |||||||||||| |
|
|
| T |
6851 |
ttggaaaccttcaaaaaggttgtcatctacagctctcgtggatgagtcaagcatatatggtagggatgttgataaggaaaaaataatcaagtttttactt |
6950 |
T |
|
| Q |
437 |
gcaggcaatgatagtggcaaccatgttccaataatcagcgtagtcggtttaggagggatggggaaaaccacccttgctaagcttgcgcacaacgacaaca |
536 |
Q |
| |
|
| ||||||||| ||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| | |||| ||||||| |
|
|
| T |
6951 |
gaaggcaatgacagtggcaaccaggttccaataatcagcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaaagacaaca |
7050 |
T |
|
| Q |
537 |
agataaaagatcattttgatcttaaagcatgggtctatgtttttgaatcttttgatgttgttggactcacgaaagcaattcacaagtcatttaattcttc |
636 |
Q |
| |
|
||||||| | |||||||| |||||||||||||||||||||| |||||||| |||||| |||||||||| |||||||||| ||||||||||||| |||| |
|
|
| T |
7051 |
agataaagaagcattttgaacttaaagcatgggtctatgtttcagaatctttcgatgtttttggactcaccaaagcaattctcaagtcatttaatccttc |
7150 |
T |
|
| Q |
637 |
agcagatggtgaagacttaaatatactacaacataaactccaacacatactaatgggcaagaaatacttgcttgttttagatgatatctggaacggggat |
736 |
Q |
| |
|
|||||||||||||||||| ||| ||| |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||| | |
|
|
| T |
7151 |
agcagatggtgaagacttgaatcaactccaacatcaactccaacacatgttaatgggaaagaaatacttgcttgttttagatgatatatggaatgggagt |
7250 |
T |
|
| Q |
737 |
gcagaatgttgggagctgttacttcttccctttaaccatggatcttctg |
785 |
Q |
| |
|
| ||||| |||||||| | |||| ||||| ||||||||||||||||||| |
|
|
| T |
7251 |
gtagaatattgggagcagctactacttccgtttaaccatggatcttctg |
7299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 41068403 - 41068482
Alignment:
| Q |
37 |
agcagagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaa |
118 |
Q |
| |
|
||||||| || | |||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41068403 |
agcagagctataacagtaccaaagcatatatgtgaagaattggcttgatgaacttaaacatgttgtt--tgaagcagaccaa |
41068482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 41068553 - 41068617
Alignment:
| Q |
271 |
tgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtca |
335 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
41068553 |
tgcaaagcaaaagaaagagttgggattgggagaaggtcctaacgctagtaatgaaggcttagtca |
41068617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 19936232 - 19936185
Alignment:
| Q |
89 |
cttaaacatgttgtttatgaagcagaccaactattagatgagatttct |
136 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
19936232 |
cttaaacatgttgtttatgaagcaaaccaactattacatgagatttct |
19936185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 465 - 654
Target Start/End: Original strand, 6572800 - 6572989
Alignment:
| Q |
465 |
caataatcagcgtagtcggtttaggagggatggggaaaaccacccttgctaagcttgcgcacaacgacaacaagataaaagatcattttgatcttaaagc |
564 |
Q |
| |
|
||||||||||| |||| ||||| || ||||||||||| |||||||||||| |||||| |||| ||| | | ||| | | || ||||| |||||||| |
|
|
| T |
6572800 |
caataatcagcatagtgggtttgggtgggatggggaagaccacccttgctcagcttgtctacaatgaccagaggatggagaaacagtttgaccttaaagc |
6572899 |
T |
|
| Q |
565 |
atgggtctatgtttttgaatcttttgatgttgttggactcacgaaagcaattcacaagtcatttaattcttcagcagatggtgaagactt |
654 |
Q |
| |
|
|||||| |||| | |||| ||||||| |||||||||||| ||| |||||| | |||||| |||||| ||||| ||||||||||| |
|
|
| T |
6572900 |
ttgggtccatgtctcaaaatcatttgatgctgttggactcaccaaaacaattcttaggtcattccattcttttgcagacggtgaagactt |
6572989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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