View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_low_31 (Length: 410)
Name: NF1084_low_31
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 30 - 391
Target Start/End: Complemental strand, 28842206 - 28841845
Alignment:
| Q |
30 |
taaacatcactcttctgagtggcgatcttccttgattcggttatttctggtgcacggtatccgttggatcttgacatggttgataaggtgttcataaggg |
129 |
Q |
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| T |
28842206 |
taaacatcactcttctgagtggcgatcttccttgattcgatcacttctggagcacggtatccattggatcttgacatggttgataaggtgttcataaggg |
28842107 |
T |
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| Q |
130 |
gagtaagtccaacatcagcgatgcaaccatcaagttcttgtgttatgagtacattggttgacttgatgttgccatgaataaattttggacctccctcttt |
229 |
Q |
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| T |
28842106 |
gagtaagtccaacatcagcgatgcaaccatcaagttcttgtgttacgagtacattggttgacttgacgttgccatgaataaattttggacctccctcttt |
28842007 |
T |
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| Q |
230 |
gaggatggaaacaattcctttggcagctcccagcgcaatcttcattcttgaattccagtttaatggagttcttccattacccctgtttcctatattgttt |
329 |
Q |
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| T |
28842006 |
gtggatggaagcaattcctttggcagctcccagggcaatcttcattcttgaattccagtttaatggagttcttccttcacccctgtttcctatgttgttt |
28841907 |
T |
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| Q |
330 |
aaaaattgaggacatattagaataatagaacaataggaattataagtcctgttatgtttcat |
391 |
Q |
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| T |
28841906 |
ataaattaaggacatattagaataatagaacaataagaactataagttctgttatgtttcat |
28841845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 137 - 322
Target Start/End: Complemental strand, 42817606 - 42817421
Alignment:
| Q |
137 |
tccaacatcagcgatgcaaccatcaagttcttgtgttatgagtacattggttgacttgatgttgccatgaataaattttggacctccctctttgaggatg |
236 |
Q |
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| T |
42817606 |
tccaacatcagaaatgcagctatcaaattcttctgttattagtacattggttgatttgatgtttccatgtgtaaatttttggcccccttcggtatgaatg |
42817507 |
T |
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| Q |
237 |
gaaacaattcctttggcagctcccagcgcaatcttcattcttgaattccagtttaatggagttcttccattacccctgtttcctat |
322 |
Q |
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|| |||||||||| || ||||| || |||| ||||| |||||||||||||| ||||| |||||||| |||| |||||||||| |
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| T |
42817506 |
aaagcaattcctttagctgctccaagtgcaaccttcactcttgaattccagtcaaatggtgttcttcctgcacccttgtttcctat |
42817421 |
T |
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