View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_low_32 (Length: 406)
Name: NF1084_low_32
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 259 - 397
Target Start/End: Complemental strand, 29448657 - 29448523
Alignment:
| Q |
259 |
gatgactcgttttttcttgttttgtcaaagggtatattccaagattaattaaagaagggaaattgccaaatcacgaggcttctacacaaaaccaaaacaa |
358 |
Q |
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| T |
29448657 |
gatgactcgttttttcttgttttgtcaaagggtatattccaagattaa----agaaaggaaattgccaaattaggaggcttctacactacacaaaaacaa |
29448562 |
T |
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| Q |
359 |
aatcaaaattgaccaaactaatagcacacacagtataat |
397 |
Q |
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| T |
29448561 |
aatcaaaattgaccaaactaatagcacacacagtataat |
29448523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 259 - 397
Target Start/End: Original strand, 30259939 - 30260073
Alignment:
| Q |
259 |
gatgactcgttttttcttgttttgtcaaagggtatattccaagattaattaaagaagggaaattgccaaatcacgaggcttctacacaaaaccaaaacaa |
358 |
Q |
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| T |
30259939 |
gatgactcgttttttcttgttttgtcaaagggtatattccaagattaa----agaaaggaaattgccaaattaggaggcttctacactacacaaaaacta |
30260034 |
T |
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| Q |
359 |
aatcaaaattgaccaaactaatagcacacacagtataat |
397 |
Q |
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| T |
30260035 |
aatcaaaattgaccaaactaatagcacacgcagtataat |
30260073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 26706665 - 26706612
Alignment:
| Q |
116 |
cccaccctcctgaggggctccttcctctgctgcagacggatgaattaggaacgc |
169 |
Q |
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| T |
26706665 |
cccaccctccagaggagctccttcctttgctgcagtcggatgaattaggaacgc |
26706612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 40736608 - 40736556
Alignment:
| Q |
116 |
cccaccctcctgaggggctccttcctctgctgcagacggatgaattaggaacg |
168 |
Q |
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| T |
40736608 |
cccaccctccagatgggctccttcctttgctgcagtcggatgaattaggaacg |
40736556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 34249663 - 34249714
Alignment:
| Q |
116 |
cccaccctcctgaggggctccttcctctgctgcagacggatgaattaggaac |
167 |
Q |
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| T |
34249663 |
cccaccctccagacgggctccttcctttgctgcagtcggatgaactaggaac |
34249714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 47158773 - 47158720
Alignment:
| Q |
116 |
cccaccctcctgaggggctccttcctctgctgcagacggatgaattaggaacgc |
169 |
Q |
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| T |
47158773 |
cccaccctccagacggactcctccctttgctgcagtcggatgaattaggaacgc |
47158720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 9452406 - 9452459
Alignment:
| Q |
116 |
cccaccctcctgaggggctccttcctctgctgcagacggatgaattaggaacgc |
169 |
Q |
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| T |
9452406 |
cccaccctccagaggggttcattcctttgctgcaatcggatgaattaggaacgc |
9452459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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