View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_low_34 (Length: 396)
Name: NF1084_low_34
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_34 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0119 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 24 - 396
Target Start/End: Original strand, 1292819 - 1293191
Alignment:
| Q |
24 |
agcaccaccatgcagctacactagcacgtagtgaatcaaaagtgtacaacatggatgttgnnnnnnnnggagaagaagaaaatgatgaaaaagattatac |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1292819 |
agcaccaccatgcagctacactagcacgtagtgaatcaaaagtgtacaacatggatgttgaaaaaaaaggagaagaagaaaatgatgaaaaagattatac |
1292918 |
T |
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| Q |
124 |
acaaagagcacaatggcttagggcagctgttttaggtgctaatgatggtttactctcaacagcatccctaatgatgggtgttggtgccgttacaaaagat |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1292919 |
acaaagagcacaatggcttagggcagctgttttaggtgctaatgatggtttactctcaacagcatccctaatgatgggtgttggtgccgttacaaaagat |
1293018 |
T |
|
| Q |
224 |
gttaagacaatgattctaactggaattgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattg |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1293019 |
gttaagacaatgattctaactggaattgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattg |
1293118 |
T |
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| Q |
324 |
aatttgcacaaatgaaaagacaaggaaacatttctcaaaaagataaattgcctaacccttattatgctgcttt |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1293119 |
aatttgcacaaatgaaaagacaaggaaacatttctcaaaaagataaattgcctaacccttattatgctgcttt |
1293191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 24 - 396
Target Start/End: Complemental strand, 13775 - 13403
Alignment:
| Q |
24 |
agcaccaccatgcagctacactagcacgtagtgaatcaaaagtgtacaacatggatgttgnnnnnnnnggagaagaagaaaatgatgaaaaagattatac |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
13775 |
agcaccaccatgcagctacactagcacgtagtgaatcaaaagtgtacagcatggatgttgaaaaaaaaggagaagaagaaaatgatgaaaaagattatac |
13676 |
T |
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| Q |
124 |
acaaagagcacaatggcttagggcagctgttttaggtgctaatgatggtttactctcaacagcatccctaatgatgggtgttggtgccgttacaaaagat |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13675 |
acaaagagcacaatggcttagggcagctgttttaggtgctaatgatggtttactctcaacagcatccctaatgatgggtgttggtgccgttacaaaagat |
13576 |
T |
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| Q |
224 |
gttaagacaatgattctaactggaattgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattg |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13575 |
gttaagacaatgattctaactggaattgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattg |
13476 |
T |
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| Q |
324 |
aatttgcacaaatgaaaagacaaggaaacatttctcaaaaagataaattgcctaacccttattatgctgcttt |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13475 |
aatttgcacaaatgaaaagacaaggaaacatttctcaaaaagataaattgcctaacccttattatgctgcttt |
13403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 24 - 396
Target Start/End: Complemental strand, 19455 - 19083
Alignment:
| Q |
24 |
agcaccaccatgcagctacactagcacgtagtgaatcaaaagtgtacaacatggatgttgnnnnnnnnggagaagaagaaaatgatgaaaaagattatac |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19455 |
agcaccaccatgcagctacactagcacgtagtgaatcaaaagtgtacagcatggatgttgaaaaaaaaggagaagaagaaaatgatgaaaaagattatac |
19356 |
T |
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| Q |
124 |
acaaagagcacaatggcttagggcagctgttttaggtgctaatgatggtttactctcaacagcatccctaatgatgggtgttggtgccgttacaaaagat |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19355 |
acaaagagcacaatggcttagggcagctgttttaggtgctaatgatggtttactctcaacagcatccctaatgatgggtgttggtgccgttacaaaagat |
19256 |
T |
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| Q |
224 |
gttaagacaatgattctaactggaattgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattg |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19255 |
gttaagacaatgattctaactggaattgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattg |
19156 |
T |
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| Q |
324 |
aatttgcacaaatgaaaagacaaggaaacatttctcaaaaagataaattgcctaacccttattatgctgcttt |
396 |
Q |
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| T |
19155 |
aatttgcacaaatgaaaagacaaggaaacatttctcaaaaagataaattgcctaacccttattatgctgcttt |
19083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 126 - 343
Target Start/End: Original strand, 12281540 - 12281757
Alignment:
| Q |
126 |
aaagagcacaatggcttagggcagctgttttaggtgctaatgatggtttactctcaacagcatccctaatgatgggtgttggtgccgttacaaaagatgt |
225 |
Q |
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||||| |||||||||| || |||||||||||||| ||||| ||||| ||| |||| ||||| || |||||||||||||| ||||| || | |||| | |
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| T |
12281540 |
aaagatcacaatggctaagagcagctgttttaggcgctaacgatggattagtctctacagcttcgctaatgatgggtgtcggtgcagtcaagcaagacat |
12281639 |
T |
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| Q |
226 |
taagacaatgattctaactggaattgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattgaa |
325 |
Q |
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|| ||||||| |||| || |||| || | ||||| |||||||| ||||||||||| ||||||||||| ||||| || ||||||| || |||||| |
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| T |
12281640 |
caaagcaatgatcttaaccggttttgccgggttggtagccggtgcatgcagcatggcaataggtgaatttgtctctgtgtactcacaattagacattgaa |
12281739 |
T |
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| Q |
326 |
tttgcacaaatgaaaaga |
343 |
Q |
| |
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|||| |||||||||||| |
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| T |
12281740 |
gttgctcaaatgaaaaga |
12281757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 343
Target Start/End: Complemental strand, 44635765 - 44635548
Alignment:
| Q |
126 |
aaagagcacaatggcttagggcagctgttttaggtgctaatgatggtttactctcaacagcatccctaatgatgggtgttggtgccgttacaaaagatgt |
225 |
Q |
| |
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||||| |||||||||| | || || |||||||| ||||||||||| ||| | ||||||||||| |||||||||||||| || || || | | |||| | |
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| T |
44635765 |
aaagatcacaatggctacgtgccgcagttttaggagctaatgatggattagtttcaacagcatcactaatgatgggtgtaggagcagtgaaacaagacat |
44635666 |
T |
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| Q |
226 |
taagacaatgattctaactggaattgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattgaa |
325 |
Q |
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|| | ||||| | | || ||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||| ||| |||||| |
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| T |
44635665 |
aaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaa |
44635566 |
T |
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| Q |
326 |
tttgcacaaatgaaaaga |
343 |
Q |
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|||| ||| | |||||| |
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| T |
44635565 |
attgctcaattaaaaaga |
44635548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 37742345 - 37742418
Alignment:
| Q |
251 |
gctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattga |
324 |
Q |
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|||||| | ||||||||||| |||||||||||||||||||| ||||| ||||| ||| | |||||||| ||||| |
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| T |
37742345 |
gctggtttagtagctggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgacattga |
37742418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 37749415 - 37749488
Alignment:
| Q |
251 |
gctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattga |
324 |
Q |
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|||||| | ||||||||||| |||||||||||||||||||| ||||| ||||| ||| | |||||||| ||||| |
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| T |
37749415 |
gctggtttagtagctggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgacattga |
37749488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 37752373 - 37752300
Alignment:
| Q |
251 |
gctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattga |
324 |
Q |
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|||||| | ||||| ||||| |||||||||||||||||||| ||||| ||||| ||| | |||||||| ||||| |
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| T |
37752373 |
gctggtttagtagcaggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgacattga |
37752300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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