View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1084_low_35 (Length: 394)
Name: NF1084_low_35
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_35 |
 | |
|
| [»] scaffold0121 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 29 - 232
Target Start/End: Complemental strand, 9760112 - 9759909
Alignment:
| Q |
29 |
aaaataactatatgtatgtttgaattgacatcaagtttggaagaatcctagtacgccattgtgattttgttaaaattccaatttagagttcaataaaaaa |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9760112 |
aaaataactatatgtatgtttgaattgacatcatgtttgaaagaatcctagtacgccattgtgattttgttaaaattgcaatttagagttcaataaaaaa |
9760013 |
T |
|
| Q |
129 |
tcacaagaatctaaatattgaataccataacatgtctggtttttcttttgtctagttatatattgctgnnnnnnnncttcttatgaaattagtaataatt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9760012 |
tcacaagaatctaaatattgaataccataacatgtctggtttttcttttgtctagttatatattgctggtttttttcttcttatgaaattagtaataatt |
9759913 |
T |
|
| Q |
229 |
ttgg |
232 |
Q |
| |
|
|||| |
|
|
| T |
9759912 |
ttgg |
9759909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 9759766 - 9759715
Alignment:
| Q |
329 |
attgcatggactgcattcatgtggctagcaactgatccaatttcaagtgata |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9759766 |
attgcatggactgcattcatgtggctagcaactgatccaatttcaagtgata |
9759715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 31 - 221
Target Start/End: Original strand, 49046170 - 49046360
Alignment:
| Q |
31 |
aataactatatgtatgtttgaattgacatcaagtttggaagaatcctagtacgccattgtgattttgttaaaattccaatttagagttcaataaaaaatc |
130 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||| |||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
49046170 |
aataactatatgtatgtttggattgacatcatgtttggtagaatcgtagtaagccattgtgattttgttaaaattgcaatttagagttcaataaaaaatc |
49046269 |
T |
|
| Q |
131 |
acaagaatctaaatattgaataccataacatgtctggtttttcttttgtctagttatatattgctgnnnnnnnncttcttatgaaattagt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
49046270 |
acaagaatctaaatattgaataccataacatgtctggtttttcttttgtctagttatatattgctgtttttttccttcttatgaaattagt |
49046360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 324 - 380
Target Start/End: Original strand, 49046467 - 49046523
Alignment:
| Q |
324 |
caaacattgcatggactgcattcatgtggctagcaactgatccaatttcaagtgata |
380 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
49046467 |
caaaaattgcatggactgcagtcatgtggctagcaactgatccaatttcaagtgata |
49046523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 32 - 177
Target Start/End: Original strand, 35652 - 35797
Alignment:
| Q |
32 |
ataactatatgtatgtttgaattgacatcaagtttggaagaatcctagtacgccattgtgattttgttaaaattccaatttagagttcaataaaaaatca |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
35652 |
ataactatatgtatgtttgaattgacatcaaatttggtagaattgtagtacgccattgtgattttgttaaaattgcaatttagagttcaataaaaattca |
35751 |
T |
|
| Q |
132 |
caagaatctaaatattgaataccataacatgtctggtttttctttt |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
35752 |
caagaatctaaatattgaataccataacatgtctgttttttttttt |
35797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 35880 - 35928
Alignment:
| Q |
332 |
gcatggactgcattcatgtggctagcaactgatccaatttcaagtgata |
380 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35880 |
gcatggactgcagtcatgtggcaagcaactgatccaatttcaagtgata |
35928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University