View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_low_37 (Length: 388)
Name: NF1084_low_37
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 104; Significance: 9e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 250 - 383
Target Start/End: Original strand, 2844540 - 2844677
Alignment:
| Q |
250 |
ttattttaggattacatttcatcccgtttcaactacaaaaacatcagaaaagttcatcaattgagc--agcaccacagataacataaagcacgcatggaa |
347 |
Q |
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| T |
2844540 |
ttattttaggattacatttcatcccgtttcaactacaaaaacatcagaaaagttcatcaattgagagtaaaaccacagataacataaagcacgcatggaa |
2844639 |
T |
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| Q |
348 |
acaattagggtcact--tatagccacaatcatgttcat |
383 |
Q |
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| T |
2844640 |
acaattagggtcacttatatagccacaatcatgttcat |
2844677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 2844380 - 2844537
Alignment:
| Q |
1 |
caaatttgacattaagtgtttaatttatactctagcgatgttacccgatagaagaatacaaatgctaaagggtgattcttctgatgttaacattctgtca |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||| |
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| T |
2844380 |
caaatttgacattaattgtttaatttatactctagcgatgttacccgatagaagaatacaaatgctaaaggatga---ttctgatgttaacattctatca |
2844476 |
T |
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| Q |
101 |
tctaatatttaagcatgccacaacgcttatgnnnnnnnaatgaaagttgagcatgctaacttt |
163 |
Q |
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| T |
2844477 |
tctaatatttaagcatgc--caactcttatgtttttttaatgaaagttgagcatgctaacttt |
2844537 |
T |
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