View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_low_38 (Length: 387)
Name: NF1084_low_38
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 31 - 377
Target Start/End: Complemental strand, 9709306 - 9708960
Alignment:
| Q |
31 |
gatgtttcccagcttttaagaacatgaagacgctaaagtgtgaaaaatccgaatcagaaaacagcagccataatgagcacgtatctgcaacaacgcctca |
130 |
Q |
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| T |
9709306 |
gatgtttcccagcttttaagaacatgaagacgctaaagtgtgaaaaatccgaatcagaaaacagcagccataatgagcacgtatctgcaacaacgcctca |
9709207 |
T |
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| Q |
131 |
acttcaagcttctcgctcgttgcactctgagcctcgaagttctatggctagtatgaaatcctttaaccgagttgccaacaacagaacacgggcgttgtct |
230 |
Q |
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| T |
9709206 |
acttcaagcttctcgctcgttgcactctgatcctcgaagttctatggctagtatgaaatcccttaaccgagttgccaacaacagaacacgggtgttgtct |
9709107 |
T |
|
| Q |
231 |
tctccgtcagctctagcctcagttgagcacgaggaacaagaaatgtcaagagtattagcgagattaatgaaggagccgcgttcgcctattccacatccct |
330 |
Q |
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| T |
9709106 |
tctccgtcagctctagcctcagttgagcacgaggaacaagaaatgtcgagagtattagcgagattaatgaaggagccgcgttctcctattccacagccct |
9709007 |
T |
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| Q |
331 |
tacctcttccatctcctcaaggaaatggtccattgaagctaaggatg |
377 |
Q |
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| T |
9709006 |
tacctcttccatctcctcaaggaaatggtccgttgaagttaaggatg |
9708960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 5794675 - 5794627
Alignment:
| Q |
299 |
gaaggagccgcgttcgcctattccacatcccttacctcttccatctcct |
347 |
Q |
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| T |
5794675 |
gaaggagcagcgttcgcctagtccacaaccattaccgcttccatctcct |
5794627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 349
Target Start/End: Original strand, 27344232 - 27344285
Alignment:
| Q |
296 |
aatgaaggagccgcgttcgcctattccacatcccttacctcttccatctcctca |
349 |
Q |
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| T |
27344232 |
aatgaaggagccgcgttcttctagtccacaacctttaccacttccatctcctca |
27344285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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