View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_low_39 (Length: 371)
Name: NF1084_low_39
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 140 - 316
Target Start/End: Original strand, 52582283 - 52582467
Alignment:
| Q |
140 |
gttactaatctaaagagcatcataagtcatgaatttcaaaaactgtaaattcacctgaagacacattggatcattttgtcatgttacataataatattct |
239 |
Q |
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| T |
52582283 |
gttactaatctaaagagcatcataagtcatgaatttcaaaaactgtaaattcacctgaagacacattggatcattttgtcatgttacataataatattct |
52582382 |
T |
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| Q |
240 |
ctcctgattttgaaatttctcaaacaaaattctttctatcttcatag--------attcacttctaagtcctaatcctccacagt |
316 |
Q |
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| T |
52582383 |
ctcctgattttgaaatttctcaaacaaaattctttttatcttcataggttatataattcacttctaagtcctaatcctccacagt |
52582467 |
T |
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