View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1084_low_4 (Length: 674)

Name: NF1084_low_4
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1084_low_4
NF1084_low_4
[»] chr2 (1 HSPs)
chr2 (89-674)||(37137373-37137952)


Alignment Details
Target: chr2 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 89 - 674
Target Start/End: Original strand, 37137373 - 37137952
Alignment:
Q  89 gacatcatcatcaattctttgtgaatattcaataatcatgaaaaccagaagagattacaagtgaatattttgaaaatgttgtgattcgtggttttaaatt 188  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37137373 gacattatcatcaattctttgtgaatattcaataatcatgaaaactagaagagattacaagtgaatattttgaaaatgttgtgattcgtggctttaaatt 37137472  T
Q  189 gtggtttgcaaccaaaattacatacaaatgatgaagaattttgaggtctcta-caacgacaaatataatagcaccgactatattttgcagcaatataaaa 287  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||| |||| |||||||||||||||||||||||  ||||||||||    
T  37137473 gtggtttgcaaccataattacatacaaatgatgaagaattttgaggtctcttgcaacgaaaaatttaatagcaccgactatattttgctccaatataaaa 37137572  T
Q  288 atgaatttaatttgtataccttgattttacacatgcatttaatcaaatcactttatagtttcacttttataattaattcctaaaatattgttacaaatat 387  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37137573 atgaatttaatttgtataccctgattttaaacatgcatttaatcaaatcactttatagttttacttttataattaattcctaaaatattgttacaaatat 37137672  T
Q  388 cttggtgtcgtgatttaattgaatgcatgtgtaaacatgttgtgattgatacaagatgaatttttatattgtgattgaaaattaaaaatttatatttatg 487  Q
    |||||||||||||||| |||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||       ||||||||||||||||    
T  37137673 cttggtgtcgtgatttgattgaatgctggtgtaaacatgttgtgatcgatacaagatgaatttttatattgtgattg-------aaaatttatatttatg 37137765  T
Q  488 ataatcaaacatatatttaagtttttgaacaatattaggacttttcttttcatttaatttgatgagtgtatagatagtgttaaagaaaaagatgctcttg 587  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||    
T  37137766 ataatcaaacatatatttaagtttttgaacaatattaggacttttcttttcatttaatttgatgactgtataaatagtgtcaaagaaaaagatgctcttg 37137865  T
Q  588 tacaatttctactcattgcattgcattcatatactcttgtatgattcttgccatgacagtgcactaaagtcatatgaaacttgtaaa 674  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37137866 tacaatttctactcattgcattgcattcatatactcttgtatgattcttgccatgacagtgcactaaagtcatatgaaacttgtaaa 37137952  T

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