View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1084_low_43 (Length: 360)
Name: NF1084_low_43
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_43 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 311
Target Start/End: Original strand, 31206234 - 31206532
Alignment:
| Q |
13 |
gagattcgattccacctcttgatggaggaaaagaagttgttttcgagagaattttctcaaattgttttaggatgtggatatttgaacccgtgatgtgtga |
112 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31206234 |
gagattcgattccacctctcgatggaggaaaaaaagttgttttcgagagaattttctcaaattgttttaggatgtggatatttgaacccgggatgtgtga |
31206333 |
T |
|
| Q |
113 |
gattccaacaagggttgtatggcataaagaaaataagaaccaaattgcaaacattattatacttacatttaagcacttgccacaagcatatttgcttagc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31206334 |
gattccaacaagggttgtatggcataaagaaaataagaaccaaattgcaaacattattatacttacatttaagcacttgccacaagcatatttgcttagc |
31206433 |
T |
|
| Q |
213 |
catataccacaaaaggcagcccaaccatatttgcttcgccatgacaatgatttgttcccatcttgagatgcacataacacacctgctgtgttcaagttc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31206434 |
catataccacaaaaggcagcccaaccatatttgcttcgccatgacaatgatttgttcccatcttgagatgcacataacacacctgctgtgttcaagttc |
31206532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 219 - 311
Target Start/End: Original strand, 31175103 - 31175195
Alignment:
| Q |
219 |
ccacaaaaggcagcccaaccatatttgcttcgccatgacaatgatttgttcccatcttgagatgcacataacacacctgctgtgttcaagttc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||| |||||||||| ||||||||||||| |
|
|
| T |
31175103 |
ccacaaaaggcagcccaaccatatttgcttcgccatgacaatggtttgttaccatcttgagctgcacagaacacacctgatgtgttcaagttc |
31175195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 219 - 311
Target Start/End: Original strand, 31192601 - 31192693
Alignment:
| Q |
219 |
ccacaaaaggcagcccaaccatatttgcttcgccatgacaatgatttgttcccatcttgagatgcacataacacacctgctgtgttcaagttc |
311 |
Q |
| |
|
|||||||| |||| | |||||||||||||| ||||||| ||||||||||| ||||| |||| ||||||||| ||||||| ||||||||||||| |
|
|
| T |
31192601 |
ccacaaaaagcagtcaaaccatatttgcttggccatgaaaatgatttgtttccatcctgagctgcacataatacacctgatgtgttcaagttc |
31192693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 219 - 311
Target Start/End: Original strand, 31143295 - 31143387
Alignment:
| Q |
219 |
ccacaaaaggcagcccaaccatatttgcttcgccatgacaatgatttgttcccatcttgagatgcacataacacacctgctgtgttcaagttc |
311 |
Q |
| |
|
||||| ||||||||||||||| ||| || |||||||||||||||||||||||||| |||| |||||| || ||||| | ||||||||||||| |
|
|
| T |
31143295 |
ccacagaaggcagcccaaccaaattcactacgccatgacaatgatttgttcccatcctgagctgcacaaaatacaccagatgtgttcaagttc |
31143387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 31175048 - 31175085
Alignment:
| Q |
170 |
tatacttacatttaagcacttgccacaagcatatttgc |
207 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
31175048 |
tatacatacatttaagcacttgccacaagcagatttgc |
31175085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 35939848 - 35939888
Alignment:
| Q |
219 |
ccacaaaaggcagcccaaccatatttgcttcgccatgacaa |
259 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
35939848 |
ccacaaaaggcagtccaaccatatttgctacgccatgacaa |
35939888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 35929122 - 35929162
Alignment:
| Q |
219 |
ccacaaaaggcagcccaaccatatttgcttcgccatgacaa |
259 |
Q |
| |
|
||||| ||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
35929122 |
ccacagaaggcagtccaaccatatttgctacgccatgacaa |
35929162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University