View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1084_low_49 (Length: 352)

Name: NF1084_low_49
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1084_low_49
NF1084_low_49
[»] chr3 (1 HSPs)
chr3 (105-256)||(42431530-42431681)
[»] chr8 (4 HSPs)
chr8 (256-302)||(24519473-24519519)
chr8 (258-302)||(21268508-21268552)
chr8 (259-302)||(4876814-4876857)
chr8 (259-302)||(4879142-4879185)
[»] scaffold0008 (1 HSPs)
scaffold0008 (259-302)||(73069-73112)
[»] chr4 (5 HSPs)
chr4 (259-302)||(42468758-42468801)
chr4 (259-302)||(42471087-42471130)
chr4 (259-302)||(45161971-45162014)
chr4 (259-302)||(45166863-45166906)
chr4 (259-289)||(50856063-50856093)
[»] chr7 (7 HSPs)
chr7 (259-302)||(3932507-3932550)
chr7 (259-302)||(3934746-3934789)
chr7 (259-302)||(16497157-16497200)
chr7 (259-302)||(16497187-16497230)
chr7 (259-288)||(3932537-3932566)
chr7 (259-288)||(3934776-3934805)
chr7 (259-288)||(8733827-8733856)
[»] chr5 (1 HSPs)
chr5 (259-302)||(37207634-37207677)
[»] chr6 (1 HSPs)
chr6 (259-289)||(21199141-21199171)


Alignment Details
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 105 - 256
Target Start/End: Complemental strand, 42431681 - 42431530
Alignment:
Q  105 aattcgtatgaaatgagggtgtaggagcggaattcggagacttatcctggtttgcccggtttctacgttttccacactttttatgctacggttgagggtt 204  Q
    ||||||||||| ||||| ||| ||||| ||||||| | | ||||||||||||| || ||||  || ||||| || | |||   |||||| || |||||||    
T  42431681 aattcgtatgagatgagagtggaggagaggaattcagggtcttatcctggtttacctggttgttatgttttgcatattttgagtgctacagtggagggtt 42431582  T
Q  205 tgccggagggtgatttttgctcttctgaggtggacgagtacgctgattctga 256  Q
    |||||||||||||||||||| | | ||||||||||||||| | |||||||||    
T  42431581 tgccggagggtgatttttgcacgtatgaggtggacgagtatgatgattctga 42431530  T

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Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 24519519 - 24519473
Alignment:
Q  256 acctgatgaagaataatatggaagtctctagaatggtgaagaataat 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  24519519 acctgatgaagaataatatggaagtctctagaatggtgaagaataat 24519473  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 21268552 - 21268508
Alignment:
Q  258 ctgatgaagaataatatggaagtctctagaatggtgaagaataat 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  21268552 ctgatgaagaataatatggaagtctctagaatggtgaagaataat 21268508  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 4876814 - 4876857
Alignment:
Q  259 tgatgaagaataatatggaagtctctagaatggtgaagaataat 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  4876814 tgatgaagaataatatggaagtctctagaatggtgaagaataat 4876857  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 4879142 - 4879185
Alignment:
Q  259 tgatgaagaataatatggaagtctctagaatggtgaagaataat 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  4879142 tgatgaagaataatatggaagtctctagaatggtgaagaataat 4879185  T

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Target: scaffold0008 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 73069 - 73112
Alignment:
Q  259 tgatgaagaataatatggaagtctctagaatggtgaagaataat 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  73069 tgatgaagaataatatggaagtctctagaatggtgaagaataat 73112  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 259 - 302
Target Start/End: Complemental strand, 42468801 - 42468758
Alignment:
Q  259 tgatgaagaataatatggaagtctctagaatggtgaagaataat 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42468801 tgatgaagaataatatggaagtctctagaatggtgaagaataat 42468758  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 259 - 302
Target Start/End: Complemental strand, 42471130 - 42471087
Alignment:
Q  259 tgatgaagaataatatggaagtctctagaatggtgaagaataat 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42471130 tgatgaagaataatatggaagtctctagaatggtgaagaataat 42471087  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 45161971 - 45162014
Alignment:
Q  259 tgatgaagaataatatggaagtctctagaatggtgaagaataat 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  45161971 tgatgaagaataatatggaagtctctagaatggtgaagaataat 45162014  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 45166863 - 45166906
Alignment:
Q  259 tgatgaagaataatatggaagtctctagaatggtgaagaataat 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  45166863 tgatgaagaataatatggaagtctctagaatggtgaagaataat 45166906  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 289
Target Start/End: Complemental strand, 50856093 - 50856063
Alignment:
Q  259 tgatgaagaataatatggaagtctctagaat 289  Q
    |||||||||||||||||||||||||||||||    
T  50856093 tgatgaagaataatatggaagtctctagaat 50856063  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 3932507 - 3932550
Alignment:
Q  259 tgatgaagaataatatggaagtctctagaatggtgaagaataat 302  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  3932507 tgatgaagaataatatggaagtctctagaatgatgaagaataat 3932550  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 3934746 - 3934789
Alignment:
Q  259 tgatgaagaataatatggaagtctctagaatggtgaagaataat 302  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  3934746 tgatgaagaataatatggaagtctctagaatgatgaagaataat 3934789  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 302
Target Start/End: Complemental strand, 16497200 - 16497157
Alignment:
Q  259 tgatgaagaataatatggaagtctctagaatggtgaagaataat 302  Q
    |||| ||||||||||||||||||||||||||| | |||||||||    
T  16497200 tgatcaagaataatatggaagtctctagaatgatcaagaataat 16497157  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 302
Target Start/End: Complemental strand, 16497230 - 16497187
Alignment:
Q  259 tgatgaagaataatatggaagtctctagaatggtgaagaataat 302  Q
    |||| ||||||||||||||||||||||||||| | |||||||||    
T  16497230 tgatcaagaataatatggaagtctctagaatgatcaagaataat 16497187  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Original strand, 3932537 - 3932566
Alignment:
Q  259 tgatgaagaataatatggaagtctctagaa 288  Q
    ||||||||||||||||||||||||||||||    
T  3932537 tgatgaagaataatatggaagtctctagaa 3932566  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Original strand, 3934776 - 3934805
Alignment:
Q  259 tgatgaagaataatatggaagtctctagaa 288  Q
    ||||||||||||||||||||||||||||||    
T  3934776 tgatgaagaataatatggaagtctctagaa 3934805  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Complemental strand, 8733856 - 8733827
Alignment:
Q  259 tgatgaagaataatatggaagtctctagaa 288  Q
    ||||||||||||||||||||||||||||||    
T  8733856 tgatgaagaataatatggaagtctctagaa 8733827  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 37207634 - 37207677
Alignment:
Q  259 tgatgaagaataatatggaagtctctagaatggtgaagaataat 302  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  37207634 tgatgaagaataatatggaagtctctagaatgatgaagaataat 37207677  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 289
Target Start/End: Original strand, 21199141 - 21199171
Alignment:
Q  259 tgatgaagaataatatggaagtctctagaat 289  Q
    |||||||||||||||||||||||||||||||    
T  21199141 tgatgaagaataatatggaagtctctagaat 21199171  T

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