View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1084_low_56 (Length: 335)
Name: NF1084_low_56
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_56 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 71 - 325
Target Start/End: Complemental strand, 10812566 - 10812312
Alignment:
| Q |
71 |
ctatattggccttctctatataaagccaccaatagttgcaaaaatcaagtagaatttaagagacaaagagtgagtaagagaggacacaccttattctcca |
170 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10812566 |
ctatattggcattctctatataaagccaccaatagttgcaaaaatcaagtagaatttaagagacaaagagtgagtaagagagggcacaccttattctcca |
10812467 |
T |
|
| Q |
171 |
catatcacacactccctctctccttctaagcactaataaccaaacaacatggcttcacaacttgttagtgatgtcaaatgccaaacactaatgcattgtg |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10812466 |
catatcacacactccctctctccttctaagcactaacaaccaaacaacatggcttcacaacttgttagtgatgtcaaatgccaaacactaatgcattgtg |
10812367 |
T |
|
| Q |
271 |
cagcctcttatggtgaaagaggaagcaaaccaacaccatctcgtcgcaacagcta |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10812366 |
cagcctcttatggtgaaagaggaagcaaaccaacaccatctcgtcgcaaaagcta |
10812312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University