View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_low_57 (Length: 334)
Name: NF1084_low_57
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_57 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 30 - 325
Target Start/End: Complemental strand, 40616502 - 40616206
Alignment:
| Q |
30 |
gtagtatacagttccataagcttagtttacctgtagtattgtagggactgcatactttttcga----agtggatccatatccgattttaaattgcaattt |
125 |
Q |
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| T |
40616502 |
gtagtatacagttccataaacttagtttacctgttgtattgtagggactacatactttttcgactacagtggatccatattcgattttaaattgcaattt |
40616403 |
T |
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| Q |
126 |
tgtcggggtaacagaaaatttgaaatcatgttgtaggaattatcttaatctatgatatcgtctatgatgtgggagtgctataatgaagtctttgttatca |
225 |
Q |
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| T |
40616402 |
tgtcggggtaacagaaaatttgaaatcatgttgtaggaattatcttaatctatgatatcgtctatgatgtgggagtgctataatgaagtctttgttatca |
40616303 |
T |
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| Q |
226 |
tatctctttaagtgtttataattttaagtcaaatacttgaatatcctttgcannnnnnnacattcttgcttctttagattttttaattgatgagtataat |
325 |
Q |
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| T |
40616302 |
tatctc-ttaagtgtttataattttaagtcaaatacttaaatatcctttgca--tttatacattcttacttctttagattttttaattgatgagtataat |
40616206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 142 - 325
Target Start/End: Original strand, 7990250 - 7990431
Alignment:
| Q |
142 |
aatttgaaatcatgttgtaggaattatcttaatctatgatatcgtctatgatgtgggagtgctataatgaagtctttgttatcatatctctttaagtgtt |
241 |
Q |
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| T |
7990250 |
aatttgaaatcatgttgtaggaattatcttaatctatgatatcatctatgatgtgggagtgctataatgaaatctttgttatcatatctctttaagtgct |
7990349 |
T |
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| Q |
242 |
tataattttaagtcaaatacttgaatatcctttgcannnnnnnacattcttgcttctttagattttttaattgatgagtataat |
325 |
Q |
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| T |
7990350 |
taaaattttaagtcaaatacttgaatatcctttgca--tatttacattcttacttctttagatttttcaattgatgagtataat |
7990431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 7990131 - 7990207
Alignment:
| Q |
65 |
gtattgtagggactgcatactttttcga----agtggatccatatccgattttaaattgcaattttgtcggggtaac |
137 |
Q |
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| T |
7990131 |
gtattgtagtgactgcatacttttccgactgcagtggatccatatccgattttaaattgcaattttgtcggggtaac |
7990207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 142 - 325
Target Start/End: Original strand, 5032071 - 5032251
Alignment:
| Q |
142 |
aatttgaaatcatgttgtaggaattatcttaatctatgatatcgtctatgatgtgggagtgctataatgaagtctttgttatcatatctctttaagtgtt |
241 |
Q |
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| T |
5032071 |
aatttaaaatcatgttgtagaaattatcttaatctatgatattatccatgatgtgggagtgttatgatgaagtctttgtcatcatatc-ccttaagtgct |
5032169 |
T |
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| Q |
242 |
tataattttaagtcaaatacttgaatatcctttgcannnnnnnacattcttgcttctttagattttttaattgatgagtataat |
325 |
Q |
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| T |
5032170 |
taaaattttaagtcaaatacttgaatatcctttgca--tttttacattcatgcttctttagatttttcaattgatgagtataat |
5032251 |
T |
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