View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_low_58 (Length: 332)
Name: NF1084_low_58
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 30 - 320
Target Start/End: Complemental strand, 39543505 - 39543215
Alignment:
| Q |
30 |
ctttcgattccctatagtggtagattagcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgagtttttggaggcagcagtga |
129 |
Q |
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| T |
39543505 |
ctttcgattccctatggtggtagattagcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgagtttttggaggcagcagtga |
39543406 |
T |
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| Q |
130 |
cagaggagcatttcttgggtctaattgattgggtggaagagcatcgaccagttccgggattggcaaggatttattgtggtagcactggtggagaagaggg |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| || |
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| T |
39543405 |
cagaggagcatttcttgggtctaattgattgggtggaagagcatcgaccagttcctggattggctaggatttattgtggcagcactggtggagaagaagg |
39543306 |
T |
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| Q |
230 |
accaacatttgtggtgtcttcagggcagagatttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcatttt |
320 |
Q |
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| T |
39543305 |
accaacatttgtggtatcttcagggcagaggtttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcatttt |
39543215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 30 - 320
Target Start/End: Complemental strand, 39553524 - 39553234
Alignment:
| Q |
30 |
ctttcgattccctatagtggtagattagcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgagtttttggaggcagcagtga |
129 |
Q |
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| T |
39553524 |
ctttcgattccctatggtggtagattagcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgagtttttggaggcagcagtga |
39553425 |
T |
|
| Q |
130 |
cagaggagcatttcttgggtctaattgattgggtggaagagcatcgaccagttccgggattggcaaggatttattgtggtagcactggtggagaagaggg |
229 |
Q |
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| T |
39553424 |
cagaggagcatttcttgggtctaattgattgggtggaagagcatcgaccagttcctggattggctaggatttattgtggcagcactggtggagaagaagg |
39553325 |
T |
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| Q |
230 |
accaacatttgtggtgtcttcagggcagagatttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcatttt |
320 |
Q |
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| T |
39553324 |
accaacatttgttgtatcttcagggcagaggtttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcatttt |
39553234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 38 - 317
Target Start/End: Complemental strand, 39586623 - 39586344
Alignment:
| Q |
38 |
tccctatagtggtagattagcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgagtttttggaggcagcagtgacagaggag |
137 |
Q |
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| T |
39586623 |
tccctatagttgtagattaatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttgtggaggttgcggacacggaagaa |
39586524 |
T |
|
| Q |
138 |
catttcttgggtctaattgattgggtggaagagcatcgaccagttccgggattggcaaggatttattgtggtagcactggtggagaagagggaccaacat |
237 |
Q |
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| T |
39586523 |
catttcttgggactaattgattgggtggaagagcatcgaccggttccgggattggcaaggatttattgcggagtaactggtggagcagatggaccgacat |
39586424 |
T |
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| Q |
238 |
ttgtggtgtcttcagggcagagatttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcat |
317 |
Q |
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| T |
39586423 |
ttgtggtgtcttctgggcaaaggttttcagagtcgaaggtagatttcggatgggggaagcccgtggttggatcttatcat |
39586344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 214
Target Start/End: Complemental strand, 17503234 - 17503152
Alignment:
| Q |
132 |
gaggagcatttcttgggtctaattgattgggtggaagagcatcgaccagttccgggattggcaaggatttattgtggtagcac |
214 |
Q |
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||||| |||||| | || || |||||||||||||||| |||||||| ||||| |||||||| | ||||||| ||||| |||| |
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| T |
17503234 |
gaggaacatttcctagggctcattgattgggtggaagcacatcgacctgttcctggattggcgaagatttatagtggtggcac |
17503152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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