View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1084_low_62 (Length: 327)

Name: NF1084_low_62
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1084_low_62
NF1084_low_62
[»] chr8 (15 HSPs)
chr8 (1-224)||(3782975-3783192)
chr8 (223-270)||(5689591-5689637)
chr8 (225-270)||(17982977-17983021)
chr8 (225-270)||(19945158-19945203)
chr8 (225-270)||(44304179-44304224)
chr8 (224-270)||(30143664-30143709)
chr8 (225-270)||(1746018-1746063)
chr8 (225-270)||(6599289-6599333)
chr8 (225-270)||(6674742-6674786)
chr8 (227-270)||(41366420-41366462)
chr8 (225-262)||(2628071-2628108)
chr8 (225-270)||(4731982-4732026)
chr8 (225-270)||(12702431-12702475)
chr8 (225-270)||(31218581-31218625)
chr8 (224-269)||(40321400-40321443)
[»] chr6 (11 HSPs)
chr6 (225-270)||(16452127-16452172)
chr6 (223-270)||(22963506-22963553)
chr6 (223-270)||(23824840-23824887)
chr6 (225-270)||(2171326-2171371)
chr6 (225-270)||(5406002-5406047)
chr6 (225-270)||(5408869-5408914)
chr6 (225-270)||(5410327-5410372)
chr6 (225-270)||(5413194-5413239)
chr6 (225-270)||(26954091-26954135)
chr6 (225-268)||(28137211-28137253)
chr6 (225-270)||(30834333-30834378)
[»] chr4 (12 HSPs)
chr4 (225-270)||(5369881-5369926)
chr4 (225-270)||(29999628-29999673)
chr4 (225-270)||(48143372-48143417)
chr4 (225-270)||(45686987-45687031)
chr4 (225-270)||(48893443-48893487)
chr4 (225-268)||(52095162-52095204)
chr4 (227-270)||(56178438-56178480)
chr4 (224-270)||(36463195-36463240)
chr4 (225-270)||(29254816-29254861)
chr4 (241-270)||(47038231-47038260)
chr4 (225-270)||(52082463-52082507)
chr4 (225-270)||(54199708-54199752)
[»] chr3 (13 HSPs)
chr3 (225-270)||(9635923-9635968)
chr3 (225-269)||(9634621-9634665)
chr3 (225-270)||(19683687-19683732)
chr3 (225-270)||(5236257-5236301)
chr3 (225-270)||(5257943-5257988)
chr3 (225-270)||(9581607-9581652)
chr3 (225-270)||(22834807-22834851)
chr3 (225-270)||(31314764-31314808)
chr3 (225-270)||(40734821-40734865)
chr3 (225-269)||(9666270-9666313)
chr3 (224-270)||(7764789-7764835)
chr3 (241-270)||(44700299-44700328)
chr3 (225-270)||(51399138-51399182)
[»] chr1 (11 HSPs)
chr1 (225-270)||(20762992-20763037)
chr1 (225-270)||(833970-834014)
chr1 (225-270)||(8550584-8550628)
chr1 (225-270)||(37503362-37503406)
chr1 (225-270)||(40122001-40122045)
chr1 (225-259)||(13316151-13316185)
chr1 (224-270)||(28265358-28265403)
chr1 (225-270)||(45644158-45644202)
chr1 (241-270)||(49918674-49918703)
chr1 (225-269)||(1833833-1833876)
chr1 (241-269)||(44455485-44455513)
[»] chr2 (16 HSPs)
chr2 (224-270)||(36205463-36205509)
chr2 (225-270)||(723547-723591)
chr2 (225-270)||(2334218-2334262)
chr2 (225-270)||(24885909-24885953)
chr2 (225-262)||(32289900-32289937)
chr2 (225-270)||(34139573-34139617)
chr2 (225-270)||(36773882-36773926)
chr2 (225-270)||(36987875-36987919)
chr2 (225-270)||(42362669-42362713)
chr2 (224-266)||(4502932-4502973)
chr2 (115-181)||(37961253-37961319)
chr2 (241-270)||(6594819-6594848)
chr2 (241-270)||(14633643-14633672)
chr2 (225-270)||(17057169-17057213)
chr2 (225-270)||(17085152-17085196)
chr2 (225-270)||(33162254-33162298)
[»] chr7 (6 HSPs)
chr7 (225-270)||(29991377-29991422)
chr7 (225-270)||(35854240-35854285)
chr7 (225-270)||(38671025-38671069)
chr7 (225-270)||(41648814-41648858)
chr7 (241-270)||(25616179-25616208)
chr7 (226-270)||(48489755-48489798)
[»] chr5 (9 HSPs)
chr5 (225-270)||(9789021-9789066)
chr5 (225-270)||(30182912-30182957)
chr5 (224-270)||(25413084-25413130)
chr5 (225-262)||(18441441-18441478)
chr5 (225-269)||(5887235-5887278)
chr5 (224-270)||(16649634-16649679)
chr5 (225-259)||(26178221-26178255)
chr5 (225-270)||(31183297-31183341)
chr5 (226-270)||(13240075-13240118)
[»] scaffold1519 (1 HSPs)
scaffold1519 (225-270)||(1240-1285)
[»] scaffold0286 (1 HSPs)
scaffold0286 (225-270)||(11890-11935)
[»] scaffold0002 (1 HSPs)
scaffold0002 (225-270)||(434858-434903)


Alignment Details
Target: chr8 (Bit Score: 173; Significance: 5e-93; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 3783192 - 3782975
Alignment:
Q  1 attagagggacgacgcgtgtgtcattgtgttcagtatgaggagaaggcaagttcggaaagnnnnnnnnngggtgcaaatttttaacatcttgtgaagaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||    
T  3783192 attagagggacgacgcgtgtgtcattgtgttcagtatgaggagaaggcaagttcggaaa------aaaagggtgcaaatttttaacatcttgtgaagaat 3783099  T
Q  101 ctgaaataaggaggttgaagtttgctaaggattcagcaacggtgaaggagagaaagtctccattgaggtagcgtatataagagggagcattttcggaatg 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||    
T  3783098 ctgaaataaggaggttgaagtttgctaaggattcagcaatggtgaaggagagagagtctccattgaggtagcgtatataagggggaacattttcggaatg 3782999  T
Q  201 tgaaggaattataagattggaaga 224  Q
    ||||||||||||||||||||||||    
T  3782998 tgaaggaattataagattggaaga 3782975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 270
Target Start/End: Complemental strand, 5689637 - 5689591
Alignment:
Q  223 gatgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5689637 gatgttgtgaattccga-ctcaaaatcacaccaatacaaactatgatg 5689591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 17983021 - 17982977
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  17983021 tgttgtgaattccgatctcaaa-tcacaccaatacaaactatgatg 17982977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 19945158 - 19945203
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||    
T  19945158 tgttgtgaattccggtctcaaaatcacaccaatacaaactttgatg 19945203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 44304224 - 44304179
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||    
T  44304224 tgttgtgaattccgttctcaaaatcacaccaatacatactatgatg 44304179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 30143709 - 30143664
Alignment:
Q  224 atgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||    
T  30143709 atgttgtgaattcaga-ctcaaaatcacaccaatacaaactatgatg 30143664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 1746018 - 1746063
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    ||||||||||| || |||||||||||||||||||| ||||||||||    
T  1746018 tgttgtgaatttcggtctcaaaatcacaccaatacgaactatgatg 1746063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 6599333 - 6599289
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  6599333 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 6599289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 6674786 - 6674742
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  6674786 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 6674742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 270
Target Start/End: Original strand, 41366420 - 41366462
Alignment:
Q  227 ttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||| || ||||||||||||||||||||||||||||||    
T  41366420 ttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 41366462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 262
Target Start/End: Complemental strand, 2628108 - 2628071
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaa 262  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  2628108 tgttgtgaattccgatctcgaaaccacaccaatacaaa 2628071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 4732026 - 4731982
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || ||||||||||||||||||||||| ||||||    
T  4732026 tgttgtgaattc-gaactcaaaatcacaccaatacaaacaatgatg 4731982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 12702431 - 12702475
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || |||||||||||| |||||||||||||||||    
T  12702431 tgttgtgaattcgga-ctcaaaatcacatcaatacaaactatgatg 12702475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 31218625 - 31218581
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||||| ||||||| ||||||||||| |||||||||||    
T  31218625 tgttgtgaattccggtctcaaa-tcacaccaatataaactatgatg 31218581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 40321443 - 40321400
Alignment:
Q  224 atgttgtgaattccgatctcaaaatcacaccaatacaaactatgat 269  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||    
T  40321443 atgttgtgaattccga-ctcaaaatcacac-aatacaaactatgat 40321400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 16452127 - 16452172
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  16452127 tgttgtgaattccgatctcaaaatcacaccaatacgaactatgatg 16452172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 270
Target Start/End: Original strand, 22963506 - 22963553
Alignment:
Q  223 gatgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||    
T  22963506 gatgttgtgaattccagactcaaaatcacaccaatacaaactatgatg 22963553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 270
Target Start/End: Complemental strand, 23824887 - 23824840
Alignment:
Q  223 gatgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||    
T  23824887 gatgttgtgaattccagactcaaaatcacaccaatacaaactatgatg 23824840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 2171326 - 2171371
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||||    
T  2171326 tgttgtgaattccggtctcaaagtcacaccaatacgaactatgatg 2171371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 5406002 - 5406047
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||||| ||| ||| |||||||||||||||||||||||    
T  5406002 tgttgtgaattccggtcttaaagtcacaccaatacaaactatgatg 5406047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 5408869 - 5408914
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||||  ||||||| |||||||||||||||||||||||    
T  5408869 tgttgtgaattccagtctcaaagtcacaccaatacaaactatgatg 5408914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 5410327 - 5410372
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||||| ||| ||| |||||||||||||||||||||||    
T  5410327 tgttgtgaattccggtcttaaagtcacaccaatacaaactatgatg 5410372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 5413194 - 5413239
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||||  ||||||| |||||||||||||||||||||||    
T  5413194 tgttgtgaattccagtctcaaagtcacaccaatacaaactatgatg 5413239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 26954091 - 26954135
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  26954091 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 26954135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 28137211 - 28137253
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatga 268  Q
    |||||||||||| | |||||||||||||||||||||||||||||    
T  28137211 tgttgtgaattcgg-tctcaaaatcacaccaatacaaactatga 28137253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 30834333 - 30834378
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    ||||||||||| || |||||||||||||||||||| || |||||||    
T  30834333 tgttgtgaatttcggtctcaaaatcacaccaatacgaaatatgatg 30834378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 5369881 - 5369926
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  5369881 tgttgtgaattccggtctcaaaatcacaccaatacaaactatgatg 5369926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 29999628 - 29999673
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  29999628 tgttgtgaattccggtctcaaaatcacaccaatacaaactatgatg 29999673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 48143417 - 48143372
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||    
T  48143417 tgttgtgaattccggactcaaaatcacaccaatacaaactatgatg 48143372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 45686987 - 45687031
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  45686987 tgttgtgaattcaga-ctcaaaatcacaccaatacaaactatgatg 45687031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 48893443 - 48893487
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  48893443 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 48893487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 52095162 - 52095204
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatga 268  Q
    |||||||||||| || ||||||||||||||||||||||||||||    
T  52095162 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatga 52095204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 270
Target Start/End: Original strand, 56178438 - 56178480
Alignment:
Q  227 ttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||| || ||||||||||||||||||||||||||||||    
T  56178438 ttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 56178480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 36463195 - 36463240
Alignment:
Q  224 atgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    ||||||||||||| || ||||||||||||| ||||||||||||||||    
T  36463195 atgttgtgaattcgga-ctcaaaatcacactaatacaaactatgatg 36463240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 29254861 - 29254816
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || || |||||||||| ||||||||||||||||    
T  29254861 tgttgtgaattcggaacttaaaatcacactaatacaaactatgatg 29254816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 270
Target Start/End: Original strand, 47038231 - 47038260
Alignment:
Q  241 ctcaaaatcacaccaatacaaactatgatg 270  Q
    ||||||||||||||||||||||||||||||    
T  47038231 ctcaaaatcacaccaatacaaactatgatg 47038260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 52082463 - 52082507
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || |||||||||||||||||||||| |||||||    
T  52082463 tgttgtgaattcgga-ctcaaaatcacaccaatacaaattatgatg 52082507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 54199708 - 54199752
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || ||||||||||||||||||||||| ||||||    
T  54199708 tgttgtgaattcgga-ctcaaaatcacaccaatacaaacgatgatg 54199752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 9635923 - 9635968
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  9635923 tgttgtgaattccggtctcaaaatcacaccaatacaaactatgatg 9635968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 9634621 - 9634665
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgat 269  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  9634621 tgttgtgaattccggtctcaaaatcacaccaatacaaactatgat 9634665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 19683687 - 19683732
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||    
T  19683687 tgttgtgaattccggtctcaaactcacaccaatacaaactatgatg 19683732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 5236257 - 5236301
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  5236257 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 5236301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 5257943 - 5257988
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||||    
T  5257943 tgttgtgaattccggtctcaaagtcacaccaatacgaactatgatg 5257988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 9581652 - 9581607
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    ||||||||||||||  |||||||||||||||||| |||||||||||    
T  9581652 tgttgtgaattccggactcaaaatcacaccaatataaactatgatg 9581607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 22834807 - 22834851
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  22834807 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 22834851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 31314808 - 31314764
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||    
T  31314808 tgttgtgaataccga-ctcaaaatcacaccaatacaaactatgatg 31314764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 40734865 - 40734821
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| | |||||||||||||||||||||||||||||||    
T  40734865 tgttgtgaattcgg-tctcaaaatcacaccaatacaaactatgatg 40734821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 9666270 - 9666313
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgat 269  Q
    |||||||||||| || |||||||||||||||||||||||||||||    
T  9666270 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgat 9666313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 7764835 - 7764789
Alignment:
Q  224 atgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||||||  |||||||  |||||||||||||||||||||    
T  7764835 atgttgtgaattccggactcaaaactacaccaatacaaactatgatg 7764789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 270
Target Start/End: Original strand, 44700299 - 44700328
Alignment:
Q  241 ctcaaaatcacaccaatacaaactatgatg 270  Q
    ||||||||||||||||||||||||||||||    
T  44700299 ctcaaaatcacaccaatacaaactatgatg 44700328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 51399182 - 51399138
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || |||||||||| |||||||||||||||||||    
T  51399182 tgttgtgaattcgga-ctcaaaatcataccaatacaaactatgatg 51399138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 20763037 - 20762992
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  20763037 tgttgtgaattccggtctcaaaatcacaccaatacaaactatgatg 20762992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 833970 - 834014
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  833970 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 834014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 8550584 - 8550628
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  8550584 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 8550628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 37503362 - 37503406
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  37503362 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 37503406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 40122001 - 40122045
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  40122001 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 40122045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 259
Target Start/End: Original strand, 13316151 - 13316185
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatac 259  Q
    |||||||||||||| ||||||||||||||||||||    
T  13316151 tgttgtgaattccggtctcaaaatcacaccaatac 13316185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 28265358 - 28265403
Alignment:
Q  224 atgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||| |||||| || ||||||||||||||||||||||||||||||    
T  28265358 atgttgggaattcgga-ctcaaaatcacaccaatacaaactatgatg 28265403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 45644158 - 45644202
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || ||||||||||||| ||||||||||||||||    
T  45644158 tgttgtgaattcgga-ctcaaaatcacacaaatacaaactatgatg 45644202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 270
Target Start/End: Complemental strand, 49918703 - 49918674
Alignment:
Q  241 ctcaaaatcacaccaatacaaactatgatg 270  Q
    ||||||||||||||||||||||||||||||    
T  49918703 ctcaaaatcacaccaatacaaactatgatg 49918674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 1833876 - 1833833
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgat 269  Q
    |||||||||||| || ||||| |||||||||||||||||||||||    
T  1833876 tgttgtgaattcgga-ctcaatatcacaccaatacaaactatgat 1833833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 44455513 - 44455485
Alignment:
Q  241 ctcaaaatcacaccaatacaaactatgat 269  Q
    |||||||||||||||||||||||||||||    
T  44455513 ctcaaaatcacaccaatacaaactatgat 44455485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 36205463 - 36205509
Alignment:
Q  224 atgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||    
T  36205463 atgttgtgaattccggtctcaaaatcacactaatacaaactatgatg 36205509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 723547 - 723591
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  723547 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 723591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 2334218 - 2334262
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  2334218 tgttgtgaattcaga-ctcaaaatcacaccaatacaaactatgatg 2334262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 24885953 - 24885909
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  24885953 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 24885909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 262
Target Start/End: Complemental strand, 32289937 - 32289900
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaa 262  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  32289937 tgttgtgaattccgatctcaaaaccacaccaatacaaa 32289900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 34139573 - 34139617
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  34139573 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 34139617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 36773926 - 36773882
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||    
T  36773926 tgttgtgaattcggat-tcaaaatcacaccaatacaaactatgatg 36773882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 36987875 - 36987919
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  36987875 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 36987919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 42362713 - 42362669
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  42362713 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 42362669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 4502932 - 4502973
Alignment:
Q  224 atgttgtgaattccgatctcaaaatcacaccaatacaaactat 266  Q
    ||||||||||||||| ||||||| |||||||||||||||||||    
T  4502932 atgttgtgaattccggtctcaaa-tcacaccaatacaaactat 4502973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 37961253 - 37961319
Alignment:
Q  115 ttgaagtttgctaaggattcagcaacggtgaaggagagaaagtctccattgaggtagcgtatataag 181  Q
    ||||||| |||| |||||||||| ||||||||||||| | ||||| ||| |||||| ||||| ||||    
T  37961253 ttgaagtctgctgaggattcagctacggtgaaggagatagagtcttcatcgaggtaacgtatgtaag 37961319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 270
Target Start/End: Original strand, 6594819 - 6594848
Alignment:
Q  241 ctcaaaatcacaccaatacaaactatgatg 270  Q
    ||||||||||||||||||||||||||||||    
T  6594819 ctcaaaatcacaccaatacaaactatgatg 6594848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 270
Target Start/End: Original strand, 14633643 - 14633672
Alignment:
Q  241 ctcaaaatcacaccaatacaaactatgatg 270  Q
    ||||||||||||||||||||||||||||||    
T  14633643 ctcaaaatcacaccaatacaaactatgatg 14633672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 17057169 - 17057213
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || |||||||||||||||||||||| |||||||    
T  17057169 tgttgtgaattcgga-ctcaaaatcacaccaatacaaaatatgatg 17057213  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 17085152 - 17085196
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || |||||||||||||||||||||| |||||||    
T  17085152 tgttgtgaattcgga-ctcaaaatcacaccaatacaaaatatgatg 17085196  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 33162254 - 33162298
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || |||||||||||| |||||||||||||||||    
T  33162254 tgttgtgaattcgga-ctcaaaatcacatcaatacaaactatgatg 33162298  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 29991422 - 29991377
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||    
T  29991422 tgttgtgaattccgttctcaaagtcacaccaatacaaactatgatg 29991377  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 35854285 - 35854240
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||||  |||||||||||||| ||||||||||||||||    
T  35854285 tgttgtgaattccagtctcaaaatcacacaaatacaaactatgatg 35854240  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 38671025 - 38671069
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  38671025 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 38671069  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 41648814 - 41648858
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  41648814 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 41648858  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 270
Target Start/End: Complemental strand, 25616208 - 25616179
Alignment:
Q  241 ctcaaaatcacaccaatacaaactatgatg 270  Q
    ||||||||||||||||||||||||||||||    
T  25616208 ctcaaaatcacaccaatacaaactatgatg 25616179  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 48489798 - 48489755
Alignment:
Q  226 gttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    ||||||||||| || ||||||||||||||||||| ||||||||||    
T  48489798 gttgtgaattcgga-ctcaaaatcacaccaataccaactatgatg 48489755  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 9789021 - 9789066
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||    
T  9789021 tgttgtgaattccgatctcaaaaccacaccaatacaaagtatgatg 9789066  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 30182957 - 30182912
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||    
T  30182957 tgttgtgaattccggtctcaaaatcacaccaaaacaaactatgatg 30182912  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 25413130 - 25413084
Alignment:
Q  224 atgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    ||||||||||||||| | |||||||||||||||||| ||||||||||    
T  25413130 atgttgtgaattccggtttcaaaatcacaccaatacgaactatgatg 25413084  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 18441441 - 18441478
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaa 262  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  18441441 tgttgtgaattccgatctcaaaaccacaccaatacaaa 18441478  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 5887235 - 5887278
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgat 269  Q
    |||||||||||| || |||||||||||||||||||||||||||||    
T  5887235 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgat 5887278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 16649634 - 16649679
Alignment:
Q  224 atgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    ||||||||||||| || |||||||||| |||||||||||||||||||    
T  16649634 atgttgtgaattc-gaactcaaaatcataccaatacaaactatgatg 16649679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 259
Target Start/End: Complemental strand, 26178255 - 26178221
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatac 259  Q
    ||||||||||||||||||||||| |||||||||||    
T  26178255 tgttgtgaattccgatctcaaaaccacaccaatac 26178221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 31183341 - 31183297
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||| || ||||||||||||||||||||||| ||||||    
T  31183341 tgttgtgaattcgga-ctcaaaatcacaccaatacaaaccatgatg 31183297  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 13240118 - 13240075
Alignment:
Q  226 gttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    ||||||||||| || ||||||||||||| ||||||||||||||||    
T  13240118 gttgtgaattc-gaactcaaaatcacactaatacaaactatgatg 13240075  T

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Target: scaffold1519 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 1285 - 1240
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||||    
T  1285 tgttgtgaattccggtctcaaagtcacaccaatacgaactatgatg 1240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 11935 - 11890
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||||    
T  11935 tgttgtgaattccggtctcaaagtcacaccaatacgaactatgatg 11890  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 434903 - 434858
Alignment:
Q  225 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 270  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||||    
T  434903 tgttgtgaattccgttctcaaagtcacaccaatacgaactatgatg 434858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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