View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1084_low_63 (Length: 327)

Name: NF1084_low_63
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1084_low_63
NF1084_low_63
[»] chr6 (10 HSPs)
chr6 (1-201)||(10653847-10654047)
chr6 (213-320)||(10653693-10653805)
chr6 (232-275)||(7545418-7545461)
chr6 (232-275)||(24618437-24618480)
chr6 (237-275)||(10589065-10589103)
chr6 (233-275)||(26347494-26347536)
chr6 (238-275)||(16119370-16119407)
chr6 (232-276)||(743652-743696)
chr6 (232-268)||(22997425-22997461)
chr6 (232-268)||(23790940-23790976)
[»] chr8 (15 HSPs)
chr8 (232-275)||(11066438-11066481)
chr8 (232-274)||(29170854-29170896)
chr8 (232-278)||(44673583-44673629)
chr8 (232-275)||(6942469-6942512)
chr8 (232-275)||(18452223-18452266)
chr8 (232-263)||(38745228-38745259)
chr8 (232-275)||(42801587-42801630)
chr8 (232-275)||(43283904-43283947)
chr8 (233-275)||(13647395-13647437)
chr8 (233-275)||(13747820-13747862)
chr8 (232-278)||(33838413-33838459)
chr8 (234-275)||(7381806-7381847)
chr8 (233-282)||(7813485-7813534)
chr8 (232-277)||(28536188-28536233)
chr8 (232-268)||(8034357-8034393)
[»] chr5 (15 HSPs)
chr5 (232-275)||(18756075-18756118)
chr5 (232-275)||(15241485-15241528)
chr5 (232-275)||(16386679-16386722)
chr5 (232-275)||(16891435-16891478)
chr5 (232-275)||(20071418-20071461)
chr5 (232-275)||(37034894-37034937)
chr5 (232-275)||(43580967-43581010)
chr5 (233-275)||(8478831-8478873)
chr5 (233-275)||(32423655-32423697)
chr5 (233-275)||(35241485-35241527)
chr5 (233-275)||(40276381-40276423)
chr5 (232-274)||(41319390-41319432)
chr5 (238-275)||(27095503-27095540)
chr5 (233-281)||(17545104-17545152)
chr5 (233-273)||(34208463-34208503)
[»] chr4 (12 HSPs)
chr4 (232-275)||(56087892-56087935)
chr4 (232-276)||(10417158-10417202)
chr4 (232-275)||(5689146-5689189)
chr4 (232-275)||(13264212-13264255)
chr4 (232-275)||(27743653-27743696)
chr4 (232-275)||(37251202-37251245)
chr4 (232-275)||(39696276-39696319)
chr4 (233-275)||(194615-194657)
chr4 (233-275)||(32760731-32760773)
chr4 (232-277)||(15064138-15064183)
chr4 (232-268)||(37310116-37310152)
chr4 (239-275)||(54854146-54854182)
[»] chr1 (10 HSPs)
chr1 (232-275)||(6213510-6213553)
chr1 (232-275)||(43884883-43884926)
chr1 (233-277)||(33133867-33133911)
chr1 (232-274)||(52369686-52369728)
chr1 (233-274)||(15390310-15390351)
chr1 (242-275)||(32660924-32660957)
chr1 (233-274)||(38851972-38852013)
chr1 (232-273)||(42848679-42848720)
chr1 (232-268)||(27642672-27642708)
chr1 (232-280)||(28564278-28564326)
[»] scaffold0199 (1 HSPs)
scaffold0199 (232-277)||(8850-8895)
[»] chr3 (7 HSPs)
chr3 (233-274)||(44685108-44685149)
chr3 (232-275)||(3894633-3894676)
chr3 (232-275)||(11820093-11820136)
chr3 (232-275)||(17729080-17729123)
chr3 (232-275)||(19030309-19030352)
chr3 (233-275)||(53752638-53752680)
chr3 (233-274)||(38819263-38819304)
[»] scaffold0063 (1 HSPs)
scaffold0063 (232-275)||(56412-56455)
[»] scaffold0003 (1 HSPs)
scaffold0003 (232-275)||(304023-304066)
[»] chr7 (12 HSPs)
chr7 (232-275)||(3529869-3529912)
chr7 (232-275)||(16200648-16200691)
chr7 (232-275)||(29281280-29281323)
chr7 (232-275)||(48288347-48288390)
chr7 (233-275)||(47194363-47194405)
chr7 (232-273)||(7401327-7401368)
chr7 (233-273)||(4232284-4232324)
chr7 (239-275)||(17997707-17997743)
chr7 (232-268)||(28735817-28735853)
chr7 (231-275)||(34891296-34891340)
chr7 (229-273)||(46717265-46717309)
chr7 (233-273)||(49089589-49089629)
[»] chr2 (10 HSPs)
chr2 (242-277)||(10118889-10118924)
chr2 (232-275)||(28153080-28153123)
chr2 (233-275)||(3286995-3287037)
chr2 (233-275)||(8742762-8742804)
chr2 (233-275)||(37063602-37063644)
chr2 (233-275)||(44948686-44948728)
chr2 (238-275)||(34107365-34107402)
chr2 (232-280)||(5400585-5400633)
chr2 (239-275)||(34620608-34620644)
chr2 (239-275)||(39334848-39334884)
[»] scaffold0068 (1 HSPs)
scaffold0068 (233-275)||(46000-46042)


Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 10654047 - 10653847
Alignment:
Q  1 aactcaatttaagcctcttgtatttttcatgtttattcagtttcatttcatctacgaacttgcaatgttgtctggtgctcgtaatttgtaaatcttcaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10654047 aactcaatttaagcctcttgtatttttcatgtttattcagtttcatttcatctacgaacttgcaatgttgtctggtgctcgtaatttgtaaatcttcaca 10653948  T
Q  101 ttttctcttatagatcatgtatcaaggtggtccatattttagacaaagtcatgtgtatatttatcactagactattgtgtcactttagtatgttaattac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10653947 ttttctcttatagatcatgtatcaaggtggtccatattttagacaaagtcatgtgtatatttatcactagactattgtgtcactttagtatgttaattac 10653848  T
Q  201 a 201  Q
    |    
T  10653847 a 10653847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 213 - 320
Target Start/End: Complemental strand, 10653805 - 10653693
Alignment:
Q  213 atctcttcacttatttttaaaattgtgtgatttctagccactagactacttgacaac-----aaaaaagaagataaatttgtctctaatatgaatttctt 307  Q
    |||||||||||||||||||||||||||||| ||||||||||||| || |||||||||     |||||| |||||||||||||||||||||||||||||||    
T  10653805 atctcttcacttatttttaaaattgtgtgagttctagccactaggctgcttgacaacaacaaaaaaaaaaagataaatttgtctctaatatgaatttctt 10653706  T
Q  308 cccgtctgtggtg 320  Q
    ||||| |||||||    
T  10653705 cccgtttgtggtg 10653693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 7545418 - 7545461
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  7545418 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 7545461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 24618480 - 24618437
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    ||||||||||| ||||||||||||||||||||||| | ||||||    
T  24618480 aaattgtgtgagttctagccactagactacttgaccaaaaaaaa 24618437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 10589103 - 10589065
Alignment:
Q  237 gtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  10589103 gtgtgagttctagccactagactacttgacaaaaaaaaa 10589065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 26347494 - 26347536
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    ||||||||||  |||||||||||||||||||||||| ||||||    
T  26347494 aattgtgtgagctctagccactagactacttgacaataaaaaa 26347536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 275
Target Start/End: Original strand, 16119370 - 16119407
Alignment:
Q  238 tgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  16119370 tgtgaattctagccactagactacttgacaaaaaaaaa 16119407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 743652 - 743696
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaag 276  Q
    |||||||| ||  |||||||||||||||||||||||| |||||||    
T  743652 aaattgtgcgagctctagccactagactacttgacaaaaaaaaag 743696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 22997425 - 22997461
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaa 268  Q
    |||||||||||  ||||||||||||||||||||||||    
T  22997425 aaattgtgtgagctctagccactagactacttgacaa 22997461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 23790976 - 23790940
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaa 268  Q
    |||||||||||  ||||||||||||||||||||||||    
T  23790976 aaattgtgtgagctctagccactagactacttgacaa 23790940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 11066481 - 11066438
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||    
T  11066481 aaattgtgtgagttctagccactagactatttgacaacaaaaaa 11066438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 274
Target Start/End: Original strand, 29170854 - 29170896
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaa 274  Q
    ||||||||||| ||||||||||||||||||||||||| |||||    
T  29170854 aaattgtgtgagttctagccactagactacttgacaaaaaaaa 29170896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 278
Target Start/End: Complemental strand, 44673629 - 44673583
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaagaa 278  Q
    |||||||||||  |||||||||||||||||||||||| |||||||||    
T  44673629 aaattgtgtgagctctagccactagactacttgacaaaaaaaaagaa 44673583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 6942512 - 6942469
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  6942512 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 6942469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 18452266 - 18452223
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||||| |||||| ||||||||||||||||| ||||||    
T  18452266 aaattgtgtgatctctagctactagactacttgacaaaaaaaaa 18452223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 263
Target Start/End: Complemental strand, 38745259 - 38745228
Alignment:
Q  232 aaattgtgtgatttctagccactagactactt 263  Q
    ||||||||||||||||||||||||||||||||    
T  38745259 aaattgtgtgatttctagccactagactactt 38745228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 42801630 - 42801587
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    ||||||||||| ||||| ||||||||||||||||||| ||||||    
T  42801630 aaattgtgtgagttctaaccactagactacttgacaaaaaaaaa 42801587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 43283947 - 43283904
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  43283947 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 43283904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 13647437 - 13647395
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    ||||||||||  |||||||||||||||||||||||| ||||||    
T  13647437 aattgtgtgagctctagccactagactacttgacaaaaaaaaa 13647395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 13747862 - 13747820
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    ||||||||||  |||||||||||||||||||||||| ||||||    
T  13747862 aattgtgtgagctctagccactagactacttgacaaaaaaaaa 13747820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 278
Target Start/End: Original strand, 33838413 - 33838459
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaagaa 278  Q
    |||||||||||  |||||||||||| ||||||||||| |||||||||    
T  33838413 aaattgtgtgagctctagccactaggctacttgacaaaaaaaaagaa 33838459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 275
Target Start/End: Complemental strand, 7381847 - 7381806
Alignment:
Q  234 attgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    ||||||||| |||||||||| |||||||||||||| ||||||    
T  7381847 attgtgtgagttctagccaccagactacttgacaaaaaaaaa 7381806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 7813534 - 7813485
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaaaagaagata 282  Q
    ||||||||||  |||||||||| ||||||||||||| |||||| ||||||    
T  7813534 aattgtgtgagctctagccactggactacttgacaaaaaaaaaaaagata 7813485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 28536233 - 28536188
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaaga 277  Q
    ||||||||||| |||||||||||||| || ||||||| ||||||||    
T  28536233 aaattgtgtgagttctagccactagattatttgacaaaaaaaaaga 28536188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 8034393 - 8034357
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaa 268  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  8034393 aaattgtgtgagttctagccactaggctacttgacaa 8034357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 18756075 - 18756118
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||    
T  18756075 aaattgtgtgagttctagccactagactacttgacaaaaaaaaa 18756118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 15241485 - 15241528
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  15241485 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 15241528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 16386722 - 16386679
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  16386722 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 16386679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 16891435 - 16891478
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  16891435 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 16891478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 20071461 - 20071418
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    ||||||||||| ||||||||||||||||||||||| | ||||||    
T  20071461 aaattgtgtgaattctagccactagactacttgaccaaaaaaaa 20071418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 37034894 - 37034937
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    ||||||||| | ||||||||||||||||||||||||| ||||||    
T  37034894 aaattgtgtaaattctagccactagactacttgacaaaaaaaaa 37034937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 43580967 - 43581010
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  43580967 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 43581010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 8478873 - 8478831
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    ||||||||||  |||||||||||||||||||||||| ||||||    
T  8478873 aattgtgtgagctctagccactagactacttgacaaaaaaaaa 8478831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 32423655 - 32423697
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||| ||||||||||||||||||||||| | ||||||    
T  32423655 aattgtgtgagttctagccactagactacttgaccaaaaaaaa 32423697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 35241485 - 35241527
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||| || |||||||||||||||||||||| ||||||    
T  35241485 aattgtgtgagttttagccactagactacttgacaaaaaaaaa 35241527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 40276423 - 40276381
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||| |||||||||||||| |||||||||| ||||||    
T  40276423 aattgtgtgagttctagccactagaatacttgacaaaaaaaaa 40276381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 274
Target Start/End: Complemental strand, 41319432 - 41319390
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaa 274  Q
    |||||||||||  |||||||||||||||||||||||| |||||    
T  41319432 aaattgtgtgagctctagccactagactacttgacaaaaaaaa 41319390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 275
Target Start/End: Complemental strand, 27095540 - 27095503
Alignment:
Q  238 tgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  27095540 tgtgaattctagccactagactacttgacaaaaaaaaa 27095503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 17545152 - 17545104
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaaaagaagat 281  Q
    ||||||||||  |||||||||||| ||||||||||| |||||| |||||    
T  17545152 aattgtgtgagctctagccactaggctacttgacaaaaaaaaaaaagat 17545104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 34208463 - 34208503
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaa 273  Q
    |||||||||| ||||||||||||| ||||||||||| ||||    
T  34208463 aattgtgtgagttctagccactaggctacttgacaaaaaaa 34208503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 56087935 - 56087892
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||    
T  56087935 aaattgtgtgagttctagccactagactacttgacaaaaaaaaa 56087892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 10417202 - 10417158
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaag 276  Q
    |||||||||||  |||||||||||||||||||||||| |||||||    
T  10417202 aaattgtgtgagctctagccactagactacttgacaaaaaaaaag 10417158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 5689146 - 5689189
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    ||||||||||| ||||||||||||| ||||||||||| ||||||    
T  5689146 aaattgtgtgaattctagccactaggctacttgacaaaaaaaaa 5689189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 13264255 - 13264212
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  13264255 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 13264212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 27743696 - 27743653
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    ||||||||||||||||| | ||||||||||||||||| ||||||    
T  27743696 aaattgtgtgatttctaactactagactacttgacaaaaaaaaa 27743653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 37251202 - 37251245
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  37251202 aaattgtgtgaactctagccactagactacttgacaaaaaaaaa 37251245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 39696319 - 39696276
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  39696319 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 39696276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 194657 - 194615
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||| |||||||||||| |||||||||||| ||||||    
T  194657 aattgtgtgagttctagccactatactacttgacaaaaaaaaa 194615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 32760731 - 32760773
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||| ||||||||||||||||||||||| | ||||||    
T  32760731 aattgtgtgaattctagccactagactacttgaccaaaaaaaa 32760773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 15064183 - 15064138
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaaga 277  Q
    |||||||||||  ||||||||||| |||||||||||| ||||||||    
T  15064183 aaattgtgtgagctctagccactaaactacttgacaaaaaaaaaga 15064138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 37310116 - 37310152
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaa 268  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  37310116 aaattgtgtgaattctaaccactagactacttgacaa 37310152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 54854182 - 54854146
Alignment:
Q  239 gtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  54854182 gtgaattctagccactagactacttgacaaaaaaaaa 54854146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 6213510 - 6213553
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||    
T  6213510 aaattgtgtgagttctagccactagactacttgacaaaaaaaaa 6213553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 43884883 - 43884926
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||    
T  43884883 aaattgtgtgagttctagccactagactacttgacaaaaaaaaa 43884926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 33133911 - 33133867
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaaaaga 277  Q
    |||||||||| ||||||||||||||||||||||| | ||||||||    
T  33133911 aattgtgtgagttctagccactagactacttgactaaaaaaaaga 33133867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 274
Target Start/End: Original strand, 52369686 - 52369728
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaa 274  Q
    |||||||||||  |||||||||||||||||||||||| |||||    
T  52369686 aaattgtgtgagctctagccactagactacttgacaaaaaaaa 52369728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 15390310 - 15390351
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaaa 274  Q
    |||||||||| ||||||||||||| ||||||||||| |||||    
T  15390310 aattgtgtgagttctagccactaggctacttgacaaaaaaaa 15390351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 275
Target Start/End: Original strand, 32660924 - 32660957
Alignment:
Q  242 atttctagccactagactacttgacaacaaaaaa 275  Q
    ||||||||||||||| ||||||||||||||||||    
T  32660924 atttctagccactaggctacttgacaacaaaaaa 32660957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 38852013 - 38851972
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaaa 274  Q
    |||||||||| ||||||||||||| ||||||||||| |||||    
T  38852013 aattgtgtgagttctagccactaggctacttgacaaaaaaaa 38851972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 42848720 - 42848679
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaa 273  Q
    ||||||||||| ||||| ||||||||||||||||||| ||||    
T  42848720 aaattgtgtgagttctaaccactagactacttgacaaaaaaa 42848679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 27642708 - 27642672
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaa 268  Q
    |||||||||||  ||||||||||||||||||||||||    
T  27642708 aaattgtgtgagctctagccactagactacttgacaa 27642672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 28564326 - 28564278
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaagaaga 280  Q
    |||||||||||  |||||||||||| ||||||||||| |||||| ||||    
T  28564326 aaattgtgtgagctctagccactaggctacttgacaaaaaaaaaaaaga 28564278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 8895 - 8850
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaaga 277  Q
    ||||||||||| ||||||||||||| ||||||||||| ||||||||    
T  8895 aaattgtgtgagttctagccactaggctacttgacaaaaaaaaaga 8850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 44685149 - 44685108
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaaa 274  Q
    |||||||||| ||||||||||||||||||||||||| |||||    
T  44685149 aattgtgtgagttctagccactagactacttgacaaaaaaaa 44685108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 3894633 - 3894676
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  3894633 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 3894676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 11820093 - 11820136
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  11820093 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 11820136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 17729080 - 17729123
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  17729080 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 17729123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 19030309 - 19030352
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  19030309 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 19030352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 53752680 - 53752638
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||| ||||||||||||| ||||||||||| ||||||    
T  53752680 aattgtgtgagttctagccactaggctacttgacaaaaaaaaa 53752638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 38819304 - 38819263
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaaa 274  Q
    ||||||||||  |||||||||||||||||||||||| |||||    
T  38819304 aattgtgtgagctctagccactagactacttgacaaaaaaaa 38819263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 56412 - 56455
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    ||||||||||| || |||||||||||||||||||||| ||||||    
T  56412 aaattgtgtgagttttagccactagactacttgacaaaaaaaaa 56455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 304066 - 304023
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    ||||||||||| ||||||||||||||||||||||| | ||||||    
T  304066 aaattgtgtgaattctagccactagactacttgaccaaaaaaaa 304023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 3529869 - 3529912
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  3529869 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 3529912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 16200648 - 16200691
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||||| |||||| ||||||||||||||||| ||||||    
T  16200648 aaattgtgtgatctctagctactagactacttgacaaaaaaaaa 16200691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 29281323 - 29281280
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  29281323 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 29281280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 48288390 - 48288347
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  48288390 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 48288347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 47194405 - 47194363
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||| ||||||||||||| ||||||||||| ||||||    
T  47194405 aattgtgtgagttctagccactaggctacttgacaaaaaaaaa 47194363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 7401368 - 7401327
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaa 273  Q
    |||||||||||  |||||||||||||||||||||||| ||||    
T  7401368 aaattgtgtgagctctagccactagactacttgacaaaaaaa 7401327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 4232324 - 4232284
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaa 273  Q
    |||||||||| |||||| |||||||||||||||||| ||||    
T  4232324 aattgtgtgagttctagtcactagactacttgacaaaaaaa 4232284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 17997743 - 17997707
Alignment:
Q  239 gtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  17997743 gtgaattctagccactagactacttgacaaaaaaaaa 17997707  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 28735817 - 28735853
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaa 268  Q
    |||||||||||| |||||||||||| |||||||||||    
T  28735817 aaattgtgtgatctctagccactaggctacttgacaa 28735853  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 34891296 - 34891340
Alignment:
Q  231 aaaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||| ||||||| ||||||||||||||||||||||| | ||||||    
T  34891296 aaaaatgtgtgagttctagccactagactacttgaccaaaaaaaa 34891340  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 46717265 - 46717309
Alignment:
Q  229 ttaaaattgtgtgatttctagccactagactacttgacaacaaaa 273  Q
    |||||| ||||||  ||||||||||||||||||||||||| ||||    
T  46717265 ttaaaaatgtgtgcattctagccactagactacttgacaaaaaaa 46717309  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 49089589 - 49089629
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaa 273  Q
    ||||||||||  |||||||||||||||||||||||| ||||    
T  49089589 aattgtgtgagctctagccactagactacttgacaaaaaaa 49089629  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 10118924 - 10118889
Alignment:
Q  242 atttctagccactagactacttgacaacaaaaaaga 277  Q
    ||||||||||||||||||||||||||| ||||||||    
T  10118924 atttctagccactagactacttgacaaaaaaaaaga 10118889  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 28153123 - 28153080
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  28153123 aaattgtgtgagctctagccactagactacttgacaaaaaaaaa 28153080  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 3287037 - 3286995
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    ||||||||||  |||||||||||||||||||||||| ||||||    
T  3287037 aattgtgtgagctctagccactagactacttgacaaaaaaaaa 3286995  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 8742804 - 8742762
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    ||||||||||  |||||||||||||||||||||||| ||||||    
T  8742804 aattgtgtgaactctagccactagactacttgacaaaaaaaaa 8742762  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 37063602 - 37063644
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    ||||||||||  |||||||||||||||||||||||| ||||||    
T  37063602 aattgtgtgagctctagccactagactacttgacaaaaaaaaa 37063644  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 44948686 - 44948728
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||| ||||||||||||||||||||||| | ||||||    
T  44948686 aattgtgtgagttctagccactagactacttgaccaaaaaaaa 44948728  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 275
Target Start/End: Original strand, 34107365 - 34107402
Alignment:
Q  238 tgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  34107365 tgtgaattctagccactagactacttgacaaaaaaaaa 34107402  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 5400633 - 5400585
Alignment:
Q  232 aaattgtgtgatttctagccactagactacttgacaacaaaaaagaaga 280  Q
    ||||| ||||| ||||||||||||| ||||||||||| |||||| ||||    
T  5400633 aaattctgtgagttctagccactaggctacttgacaaaaaaaaaaaaga 5400585  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 34620608 - 34620644
Alignment:
Q  239 gtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  34620608 gtgaattctagccactagactacttgacaaaaaaaaa 34620644  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 39334884 - 39334848
Alignment:
Q  239 gtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  39334884 gtgaattctagccactagactacttgacaaaaaaaaa 39334848  T

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Target: scaffold0068 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 46000 - 46042
Alignment:
Q  233 aattgtgtgatttctagccactagactacttgacaacaaaaaa 275  Q
    |||||||||| |||||||||||| |||||||||||| ||||||    
T  46000 aattgtgtgagttctagccactaaactacttgacaataaaaaa 46042  T

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