View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1084_low_64 (Length: 327)

Name: NF1084_low_64
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1084_low_64
NF1084_low_64
[»] chr6 (17 HSPs)
chr6 (84-327)||(29645886-29646129)
chr6 (2-80)||(31654307-31654385)
chr6 (1-76)||(12343106-12343181)
chr6 (5-83)||(24618662-24618740)
chr6 (5-70)||(10521910-10521975)
chr6 (1-83)||(17750893-17750983)
chr6 (27-85)||(10521846-10521904)
chr6 (20-77)||(551170-551227)
chr6 (20-84)||(2315302-2315366)
chr6 (2-56)||(551223-551277)
chr6 (1-55)||(24587488-24587542)
chr6 (2-80)||(2315362-2315440)
chr6 (1-50)||(13043489-13043538)
chr6 (45-80)||(24618594-24618629)
chr6 (47-80)||(17751014-17751047)
chr6 (45-80)||(6299167-6299203)
chr6 (45-80)||(6305977-6306013)
[»] chr3 (34 HSPs)
chr3 (1-83)||(47677312-47677394)
chr3 (1-83)||(29031771-29031853)
chr3 (2-69)||(39385746-39385813)
chr3 (1-64)||(1801503-1801566)
chr3 (1-65)||(30476531-30476595)
chr3 (20-80)||(49418693-49418753)
chr3 (1-83)||(33689166-33689257)
chr3 (15-76)||(1801566-1801627)
chr3 (22-80)||(49414501-49414559)
chr3 (27-80)||(33689259-33689312)
chr3 (31-80)||(43139711-43139760)
chr3 (27-83)||(18321734-18321790)
chr3 (27-83)||(30476473-30476529)
chr3 (1-56)||(30734459-30734514)
chr3 (1-56)||(41752990-41753045)
chr3 (3-56)||(18321677-18321730)
chr3 (27-84)||(29031712-29031769)
chr3 (2-55)||(30580814-30580867)
chr3 (1-54)||(50524730-50524783)
chr3 (27-84)||(55223315-55223372)
chr3 (27-83)||(47677254-47677310)
chr3 (1-56)||(43139766-43139821)
chr3 (1-83)||(55223222-55223313)
chr3 (1-70)||(47492104-47492182)
chr3 (2-56)||(51046131-51046185)
chr3 (18-83)||(1272492-1272557)
chr3 (2-59)||(49418749-49418806)
chr3 (27-59)||(27729289-27729321)
chr3 (45-80)||(1272559-1272594)
chr3 (45-80)||(45103102-45103137)
chr3 (47-85)||(30734390-30734428)
chr3 (2-56)||(50550001-50550055)
chr3 (28-81)||(17547059-17547112)
chr3 (45-77)||(1801442-1801474)
[»] chr5 (28 HSPs)
chr5 (1-80)||(28818919-28818998)
chr5 (1-76)||(3899845-3899920)
chr5 (1-76)||(16971150-16971225)
chr5 (1-80)||(26662401-26662480)
chr5 (1-80)||(26933996-26934075)
chr5 (20-80)||(3180062-3180122)
chr5 (1-56)||(16439164-16439219)
chr5 (1-80)||(16802446-16802525)
chr5 (2-84)||(3180118-3180208)
chr5 (27-83)||(16439221-16439277)
chr5 (1-56)||(19655184-19655239)
chr5 (4-79)||(38134433-38134508)
chr5 (1-56)||(12913829-12913884)
chr5 (1-56)||(19598358-19598413)
chr5 (1-56)||(29699393-29699448)
chr5 (34-76)||(2953204-2953246)
chr5 (27-85)||(6912294-6912352)
chr5 (45-86)||(16971254-16971295)
chr5 (11-83)||(2356274-2356345)
chr5 (45-80)||(2356381-2356416)
chr5 (45-80)||(2953300-2953335)
chr5 (1-56)||(39031208-39031263)
chr5 (2-56)||(291123-291177)
chr5 (45-83)||(32485659-32485697)
chr5 (45-74)||(12913913-12913942)
chr5 (27-84)||(16802527-16802584)
chr5 (20-56)||(291173-291209)
chr5 (1-69)||(2093994-2094062)
[»] chr1 (50 HSPs)
chr1 (1-83)||(29371367-29371449)
chr1 (1-83)||(15220810-15220892)
chr1 (1-59)||(5694946-5695004)
chr1 (2-76)||(8337909-8337983)
chr1 (27-84)||(4609079-4609136)
chr1 (1-84)||(36290464-36290556)
chr1 (2-70)||(34062221-34062289)
chr1 (1-76)||(46334003-46334078)
chr1 (9-76)||(49444976-49445043)
chr1 (1-59)||(741559-741617)
chr1 (2-80)||(47303397-47303475)
chr1 (20-74)||(47303471-47303525)
chr1 (27-84)||(1819487-1819544)
chr1 (27-80)||(48823887-48823940)
chr1 (27-83)||(9157393-9157449)
chr1 (1-56)||(37155072-37155127)
chr1 (27-86)||(46333942-46334001)
chr1 (1-77)||(1091601-1091686)
chr1 (1-77)||(9157306-9157391)
chr1 (1-82)||(33219573-33219654)
chr1 (20-65)||(48604964-48605009)
chr1 (1-56)||(4609022-4609077)
chr1 (29-80)||(28928781-28928832)
chr1 (1-56)||(29179654-29179709)
chr1 (11-70)||(38674570-38674629)
chr1 (35-85)||(5694887-5694937)
chr1 (20-77)||(37155122-37155180)
chr1 (1-55)||(48498442-48498496)
chr1 (27-84)||(32157608-32157665)
chr1 (20-80)||(8337854-8337913)
chr1 (20-80)||(34062285-34062345)
chr1 (1-76)||(48993974-48994058)
chr1 (1-52)||(5995399-5995450)
chr1 (1-56)||(32540805-32540860)
chr1 (1-56)||(44706841-44706896)
chr1 (1-55)||(17127621-17127675)
chr1 (6-56)||(21630068-21630118)
chr1 (1-84)||(28928836-28928911)
chr1 (27-76)||(38674511-38674560)
chr1 (27-70)||(19711192-19711235)
chr1 (34-69)||(36290428-36290463)
chr1 (1-44)||(45728325-45728368)
chr1 (2-61)||(48605005-48605064)
chr1 (45-80)||(48993910-48993945)
chr1 (45-80)||(49444906-49444941)
chr1 (27-85)||(741499-741557)
chr1 (45-83)||(29371478-29371516)
chr1 (11-56)||(28395663-28395708)
chr1 (28-80)||(4579171-4579222)
chr1 (33-77)||(7788329-7788373)
[»] scaffold0047 (2 HSPs)
scaffold0047 (1-76)||(63763-63838)
scaffold0047 (27-70)||(63840-63883)
[»] chr7 (29 HSPs)
chr7 (1-76)||(29053371-29053446)
chr7 (5-56)||(27028854-27028905)
chr7 (31-85)||(30165334-30165388)
chr7 (9-70)||(4649332-4649393)
chr7 (1-58)||(7671968-7672025)
chr7 (1-70)||(42628307-42628376)
chr7 (1-56)||(22764757-22764812)
chr7 (1-56)||(34854752-34854807)
chr7 (1-55)||(10419485-10419539)
chr7 (27-80)||(27028795-27028848)
chr7 (1-52)||(38975835-38975886)
chr7 (30-84)||(4649408-4649462)
chr7 (2-56)||(11016895-11016949)
chr7 (27-80)||(41018230-41018283)
chr7 (263-303)||(49110057-49110097)
chr7 (1-56)||(4290571-4290626)
chr7 (1-56)||(15027568-15027623)
chr7 (3-50)||(48000769-48000816)
chr7 (27-77)||(34854700-34854750)
chr7 (2-56)||(45231908-45231962)
chr7 (134-195)||(49109931-49109992)
chr7 (30-82)||(25001347-25001399)
chr7 (1-76)||(41018285-41018369)
chr7 (45-80)||(11016979-11017014)
chr7 (45-80)||(42628405-42628440)
chr7 (34-77)||(45231859-45231902)
chr7 (15-56)||(27028754-27028795)
chr7 (1-54)||(30217511-30217564)
chr7 (34-70)||(29053326-29053362)
[»] chr4 (35 HSPs)
chr4 (1-76)||(42375016-42375091)
chr4 (1-83)||(55090053-55090135)
chr4 (1-82)||(40789179-40789260)
chr4 (1-77)||(52028554-52028630)
chr4 (1-76)||(47404642-47404717)
chr4 (27-80)||(47404587-47404640)
chr4 (27-80)||(50384107-50384160)
chr4 (27-83)||(55089995-55090051)
chr4 (27-86)||(31430457-31430516)
chr4 (1-76)||(53954616-53954691)
chr4 (33-85)||(24006151-24006203)
chr4 (2-70)||(38714835-38714903)
chr4 (1-56)||(6271728-6271783)
chr4 (1-56)||(23444326-23444381)
chr4 (1-56)||(30861831-30861886)
chr4 (1-56)||(35682192-35682247)
chr4 (1-56)||(47661868-47661923)
chr4 (1-56)||(51265471-51265526)
chr4 (27-70)||(55089889-55089932)
chr4 (27-80)||(24006072-24006125)
chr4 (5-76)||(31430522-31430590)
chr4 (27-80)||(40789262-40789315)
chr4 (20-83)||(28693922-28693985)
chr4 (27-82)||(45591410-45591465)
chr4 (1-55)||(47762635-47762689)
chr4 (36-81)||(19184551-19184596)
chr4 (27-68)||(52028632-52028673)
chr4 (47-83)||(25617971-25618007)
chr4 (27-59)||(26186039-26186071)
chr4 (1-62)||(45591467-45591520)
chr4 (45-80)||(42375120-42375155)
chr4 (45-80)||(53954720-53954755)
chr4 (35-70)||(54716361-54716396)
chr4 (7-56)||(31532752-31532801)
chr4 (28-80)||(9712848-9712900)
[»] chr2 (23 HSPs)
chr2 (1-76)||(6217281-6217356)
chr2 (5-80)||(2828586-2828661)
chr2 (1-80)||(14229410-14229488)
chr2 (20-83)||(14464554-14464617)
chr2 (1-76)||(29925627-29925702)
chr2 (1-77)||(2893968-2894044)
chr2 (1-70)||(38933599-38933668)
chr2 (1-76)||(37961712-37961787)
chr2 (1-44)||(14470649-14470692)
chr2 (1-56)||(15011306-15011361)
chr2 (45-83)||(14470582-14470620)
chr2 (27-76)||(15011363-15011412)
chr2 (15-74)||(2143943-2144002)
chr2 (27-70)||(2894046-2894089)
chr2 (1-56)||(29508748-29508803)
chr2 (1-56)||(37762058-37762113)
chr2 (2-56)||(6721977-6722031)
chr2 (1-54)||(8534174-8534227)
chr2 (27-63)||(2828667-2828703)
chr2 (47-83)||(45213912-45213948)
chr2 (1-56)||(16514450-16514505)
chr2 (45-80)||(38933697-38933732)
chr2 (27-56)||(14229379-14229408)
[»] chr8 (45 HSPs)
chr8 (136-201)||(28700807-28700872)
chr8 (137-201)||(28625794-28625858)
chr8 (1-65)||(39850972-39851036)
chr8 (1-80)||(6296607-6296686)
chr8 (140-201)||(28636557-28636618)
chr8 (140-201)||(28644291-28644352)
chr8 (140-201)||(28653243-28653304)
chr8 (140-201)||(28726702-28726763)
chr8 (140-201)||(28731402-28731463)
chr8 (137-201)||(28740338-28740402)
chr8 (2-55)||(10086784-10086837)
chr8 (140-201)||(28711713-28711774)
chr8 (140-201)||(28719060-28719121)
chr8 (27-80)||(34229724-34229777)
chr8 (1-56)||(5667123-5667178)
chr8 (1-83)||(34229631-34229722)
chr8 (1-54)||(4958627-4958680)
chr8 (1-56)||(8243445-8243500)
chr8 (1-56)||(35441026-35441081)
chr8 (1-55)||(8796449-8796503)
chr8 (27-80)||(8243390-8243443)
chr8 (1-76)||(5033158-5033242)
chr8 (29-80)||(1880323-1880373)
chr8 (1-85)||(31159856-31159932)
chr8 (27-86)||(34541799-34541858)
chr8 (27-80)||(39139844-39139897)
chr8 (9-85)||(43844534-43844619)
chr8 (272-304)||(28700940-28700972)
chr8 (272-304)||(28740470-28740502)
chr8 (1-76)||(33841648-33841732)
chr8 (45-80)||(5033271-5033306)
chr8 (269-304)||(28644417-28644452)
chr8 (269-304)||(28711839-28711874)
chr8 (269-304)||(28719186-28719221)
chr8 (45-80)||(33841584-33841619)
chr8 (31-70)||(36766176-36766215)
chr8 (5-56)||(45191188-45191239)
chr8 (56-85)||(34229603-34229632)
chr8 (1-70)||(34541860-34541929)
chr8 (55-87)||(2581895-2581927)
chr8 (26-70)||(13470061-13470105)
chr8 (272-304)||(28625926-28625958)
chr8 (272-304)||(28726831-28726863)
chr8 (272-304)||(28731531-28731563)
chr8 (27-75)||(37618735-37618782)
[»] scaffold0591 (2 HSPs)
scaffold0591 (140-201)||(5426-5487)
scaffold0591 (272-304)||(5326-5358)
[»] scaffold0586 (1 HSPs)
scaffold0586 (1-85)||(7104-7196)
[»] scaffold0016 (2 HSPs)
scaffold0016 (1-70)||(49760-49829)
scaffold0016 (47-80)||(49696-49729)
[»] scaffold1033 (1 HSPs)
scaffold1033 (27-81)||(2296-2350)
[»] scaffold1029 (1 HSPs)
scaffold1029 (27-81)||(2296-2350)
[»] scaffold0481 (1 HSPs)
scaffold0481 (20-70)||(2899-2949)
[»] scaffold0180 (1 HSPs)
scaffold0180 (47-82)||(19113-19148)
[»] scaffold0161 (1 HSPs)
scaffold0161 (1-56)||(27277-27332)


Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 84 - 327
Target Start/End: Complemental strand, 29646129 - 29645886
Alignment:
Q  84 gagtaatgactgaccagctagctaataagatcttatcagtattcaaggcaatcaagggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgc 183  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29646129 gagtagtgactaaccagctagctaataagatcttatcagtattcaaggcaatcaagggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgc 29646030  T
Q  184 aacaggagtcatgctatagtatctcttaaaggaattaatgtggttttgttcatgaggaatgattgaacaattaagcactgagtgagaggcaagaagagca 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29646029 aacaggagtcatgctatagtatctcttaaaggaattaatgtggttttgttcatgaggaatgattgaacaattaagcagtgagtgagaggcaagaagagca 29645930  T
Q  284 agaatgcgatccaacattttgaaagcttctggattgttgatgtt 327  Q
    |||||||||||||||||||||||||||| ||||||||| |||||    
T  29645929 agaatgcgatccaacattttgaaagcttttggattgttaatgtt 29645886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 31654385 - 31654307
Alignment:
Q  2 ttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||| |||| |||||||||    
T  31654385 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatatcacccaagtgcta 31654307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 12343181 - 12343106
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagt 76  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||| ||||||||||||||||||||||| |||||    
T  12343181 cttgtgaaagagagagaaacacaagcattgtggcattgtgattgactaatgtcacccaactctatgtcacccaagt 12343106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 24618662 - 24618740
Alignment:
Q  5 tgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 83  Q
    ||||||||||||||||||||  ||||||||||||||||||  ||| |||||||||||||||||||| ||||||||||||    
T  24618662 tgaaagagagagaaacacaagcattgtgacattgtgattggtcaacgtcacccaactctatgtcacccaagtgctatcc 24618740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 10521910 - 10521975
Alignment:
Q  5 tgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcac 70  Q
    ||||||||||||||||||||  ||| ||||||||||||||||||||||||| ||||||||||||||    
T  10521910 tgaaagagagagaaacacaagcattatgacattgtgattgaccaatgtcactcaactctatgtcac 10521975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 17750983 - 17750893
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc--------caactctatgtcacacaagtgctatcc 83  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  17750983 cttgtgaaagagagataaatacaaacattgtgacattgtgattgaccaatgtcaccaatgtcatcaactctatgtcacacaagtgctatcc 17750893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 10521904 - 10521846
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccga 85  Q
    |||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||    
T  10521904 attgtgacattgtgattggccaatgtcaccaaactctatgtcacccaagtgctatccga 10521846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 551227 - 551170
Alignment:
Q  20 cacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtg 77  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||| ||| ||||||    
T  551227 cacaaacattgtggcattgtgattgaccaatgtcacccaactctatgccacccaagtg 551170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 2315366 - 2315302
Alignment:
Q  20 cacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccg 84  Q
    |||||| ||||||||||||||||||| |||||||||||||||   |||||||||| |||||||||    
T  2315366 cacaaacattgtgacattgtgattgatcaatgtcacccaacttattgtcacacaaatgctatccg 2315302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 551223 - 551277
Alignment:
Q  2 ttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    |||||||||||||||||||||||  |||||| ||||||||||| |||||||||||    
T  551223 ttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 551277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 24587542 - 24587488
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcac 55  Q
    ||||||||| || |||||||||||  |||||||||||||||||||||||||||||    
T  24587542 cttgtgaaaaagcgagaaacacaagcattgtgacattgtgattgaccaatgtcac 24587488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 2315362 - 2315440
Alignment:
Q  2 ttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    ||||||||||||| |||||| ||  ||| ||  |||||||||   |||||||||| |||||||||||||||||||||||    
T  2315362 ttgtgaaagagagcgaaacataagcattatggtattgtgattattcaatgtcacctaactctatgtcacacaagtgcta 2315440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 13043538 - 13043489
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaat 50  Q
    ||||||||||||||||||||||||  |||||||||||  |||||||||||    
T  13043538 cttgtgaaagagagagaaacacaagcattgtgacatttcgattgaccaat 13043489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 80
Target Start/End: Complemental strand, 24618629 - 24618594
Alignment:
Q  45 accaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||||||||||||||||||| |||||||||    
T  24618629 accaatgtcacccaactctatgtcactcaagtgcta 24618594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 17751014 - 17751047
Alignment:
Q  47 caatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||| |||||||||||||||||||||||||||||    
T  17751014 caatatcacccaactctatgtcacacaagtgcta 17751047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 80
Target Start/End: Complemental strand, 6299203 - 6299167
Alignment:
Q  45 accaatgtcacccaactc-tatgtcacacaagtgcta 80  Q
    |||||||||||||||||| ||||||||||||||||||    
T  6299203 accaatgtcacccaactcttatgtcacacaagtgcta 6299167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 80
Target Start/End: Complemental strand, 6306013 - 6305977
Alignment:
Q  45 accaatgtcacccaactc-tatgtcacacaagtgcta 80  Q
    |||||||||||||||||| ||||||||||||||||||    
T  6306013 accaatgtcacccaactcttatgtcacacaagtgcta 6305977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 47677312 - 47677394
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 83  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47677312 cttgtgaaagagagagaaacacaaacattgtgacattgtgattgatcaatgtcacccaactctatgtcacacaagtgctatcc 47677394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 29031771 - 29031853
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 83  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||    
T  29031771 cttgtgaaagagagagaaacacaaacattgtgacattgtaattgaccaatatcacctaactctatgtcacacaagtgctatcc 29031853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 39385746 - 39385813
Alignment:
Q  2 ttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtca 69  Q
    |||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  39385746 ttgtgaaagagagagaaatacaaatattgtaacattgtgattggccaatgtcacccaactctatgtca 39385813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1801503 - 1801566
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactcta 64  Q
    ||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||    
T  1801503 cttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactcta 1801566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 30476531 - 30476595
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctat 65  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||  ||||||||    
T  30476531 cttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatgtcacataactctat 30476595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 49418753 - 49418693
Alignment:
Q  20 cacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  49418753 cacaaatattatgacattgtgattgaccaatatcacccaactctatgtcacccaagtgcta 49418693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 33689257 - 33689166
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgac---------caatgtcacccaactctatgtcacacaagtgctatcc 83  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||         ||||||||||||||||||||||||||||||| |||||    
T  33689257 cttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatatcatcaatgtcacccaactctatgtcacacaagtgttatcc 33689166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 1801566 - 1801627
Alignment:
Q  15 agaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagt 76  Q
    ||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||| |||||    
T  1801566 agaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatgtcacccaagt 1801627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 49414501 - 49414559
Alignment:
Q  22 caaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||| ||||||||||||| |||| ||||||||||||||||||||||||| |||||||||    
T  49414501 caaacattgtgacattgtaattggccaatgtcacccaactctatgtcacccaagtgcta 49414559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 33689259 - 33689312
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  33689259 attgtgacattgtgattggccaatgtcacccaactcaatgtcacccaagtgcta 33689312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 43139760 - 43139711
Alignment:
Q  31 tgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  43139760 tgacattgtgattgaccgatgtcacccaactctatgtcactcaagtgcta 43139711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 18321734 - 18321790
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 83  Q
    |||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||    
T  18321734 attgtgacattgtgattgaccaatgtcatccaactctatgtcatccaagtgttatcc 18321790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 30476529 - 30476473
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 83  Q
    |||||||||||||||||| ||||||||||| | |||| |||||||||||||||||||    
T  30476529 attgtgacattgtgattggccaatgtcacctagctctctgtcacacaagtgctatcc 30476473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 30734459 - 30734514
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||| |||||||||||| |||| |||||||||||||| |||||||||||    
T  30734459 cttgtgaaagatagagaaacacaagtattatgacattgtgattggccaatgtcacc 30734514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 41753045 - 41752990
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||| ||||||||||| |||||| ||||||||||| |||||||||||    
T  41753045 cttgtgaaagagaaagaaacacaaacattgtggcattgtgattggccaatgtcacc 41752990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 18321730 - 18321677
Alignment:
Q  3 tgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||| ||||| |||||||||  |||||||||||||||||||||||||||||    
T  18321730 tgtgaaaaagagaaaaacacaaactttgtgacattgtgattgaccaatgtcacc 18321677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 29031769 - 29031712
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccg 84  Q
    |||||||||||||||||||||||| ||||| ||||||||||||  |||||| ||||||    
T  29031769 attgtgacattgtgattgaccaatatcacctaactctatgtcatgcaagtgttatccg 29031712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 30580814 - 30580867
Alignment:
Q  2 ttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcac 55  Q
    |||||||||||| ||||||||||  | |||||||||||||||||||||||||||    
T  30580814 ttgtgaaagagatagaaacacaagcactgtgacattgtgattgaccaatgtcac 30580867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 50524783 - 50524730
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtca 54  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||  ||||||||    
T  50524783 cttgtgaaagagagagaaacacaaacattgtgacattatgattggtcaatgtca 50524730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 55223315 - 55223372
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccg 84  Q
    ||||||||||| |||||||||||| ||||  ||||||||||||| |||||||||||||    
T  55223315 attgtgacattatgattgaccaatatcacttaactctatgtcacccaagtgctatccg 55223372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 47677310 - 47677254
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 83  Q
    |||||||||||||||| |  |||||||||| |||||||||||||||||||| |||||    
T  47677310 attgtgacattgtgatcggtcaatgtcaccaaactctatgtcacacaagtgttatcc 47677254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 43139766 - 43139821
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||||||  |||||| |||||| |||| |||||||||||    
T  43139766 cttgtgaaagagagagaaacacaagcattgtggcattgttattggccaatgtcacc 43139821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 55223313 - 55223222
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaat---------gtcacccaactctatgtcacacaagtgctatcc 83  Q
    ||||||||||||||||||||| || |||| | | ||||||||||||||||         |||||| ||||||||||||||||||||||||||    
T  55223313 cttgtgaaagagagagaaacataagtattctaatattgtgattgaccaatatcaccaatgtcacctaactctatgtcacacaagtgctatcc 55223222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 47492104 - 47492182
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgat---------tgaccaatgtcacccaactctatgtcac 70  Q
    ||||||||| ||||||||||||||  ||||||||||||||||         ||||||||||||||||||||||||||||    
T  47492104 cttgtgaaaaagagagaaacacaagcattgtgacattgtgattggccaatatgaccaatgtcacccaactctatgtcac 47492182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 51046131 - 51046185
Alignment:
Q  2 ttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    |||||||||||||||||||||||  ||| || ||||||||||| |||||||||||    
T  51046131 ttgtgaaagagagagaaacacaagcattatggcattgtgattggccaatgtcacc 51046185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 1272557 - 1272492
Alignment:
Q  18 aacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 83  Q
    |||||||  ||||||||| | |||||| ||||||||||| |||||||||||||  |||||||||||    
T  1272557 aacacaagcattgtgacaatttgattggccaatgtcaccaaactctatgtcacctaagtgctatcc 1272492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 49418749 - 49418806
Alignment:
Q  2 ttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaa 59  Q
    |||||||||||||||||||||||  ||| ||| ||| | |||||||||||||||||||    
T  49418749 ttgtgaaagagagagaaacacaagcattatgatattataattgaccaatgtcacccaa 49418806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 27729289 - 27729321
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaa 59  Q
    |||||||||||||||||||||||||||||||||    
T  27729289 attgtgacattgtgattgaccaatgtcacccaa 27729321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 1272559 - 1272594
Alignment:
Q  45 accaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||||||||||||||||||| |||||||||    
T  1272559 accaatgtcacccaactctatgtcacccaagtgcta 1272594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 80
Target Start/End: Complemental strand, 45103137 - 45103102
Alignment:
Q  45 accaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||||||||||||||||||| |||||||||    
T  45103137 accaatgtcacccaactctatgtcacccaagtgcta 45103102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 30734428 - 30734390
Alignment:
Q  47 caatgtcacccaactctatgtcacacaagtgctatccga 85  Q
    |||||||||| ||||||||||||||||||| ||||||||    
T  30734428 caatgtcaccaaactctatgtcacacaagttctatccga 30734390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 50550055 - 50550001
Alignment:
Q  2 ttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    |||||||||||||||||||||||  ||||| | ||||||||||  ||||||||||    
T  50550055 ttgtgaaagagagagaaacacaagcattgtaatattgtgattggtcaatgtcacc 50550001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 17547059 - 17547112
Alignment:
Q  28 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctat 81  Q
    |||||||||| || ||||||||||||||| ||  ||||||||| ||||||||||    
T  17547059 ttgtgacattatggttgaccaatgtcaccaaatgctatgtcacccaagtgctat 17547112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 1801474 - 1801442
Alignment:
Q  45 accaatgtcacccaactctatgtcacacaagtg 77  Q
    |||||||||||||||||||||||||| ||||||    
T  1801474 accaatgtcacccaactctatgtcacccaagtg 1801442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 28818998 - 28818919
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28818998 cttgtgaaagagagagaaatacaagtattgtgacattgtgattgaccaatgtcacccaactctatgtcacccaagtgcta 28818919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 3899920 - 3899845
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagt 76  Q
    ||||||||||||||||||||||||  |||||| ||||||||||| ||||||||||||||||||||||||| |||||    
T  3899920 cttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacccaactctatgtcacccaagt 3899845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 16971225 - 16971150
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagt 76  Q
    ||||||||||||||||||||||||  |||||| ||||||||||| |||||||||||||| |||||||||| |||||    
T  16971225 cttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacccaagtctatgtcacccaagt 16971150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 26662480 - 26662401
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    ||||||||| ||||||||||||||  | ||| ||||||||||||  ||||||||||||||||||||||||||||||||||    
T  26662480 cttgtgaaaaagagagaaacacaagcaatgtaacattgtgattggtcaatgtcacccaactctatgtcacacaagtgcta 26662401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 26934075 - 26933996
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    ||||||||| ||||||||||||||  | ||| ||||||||||||  ||||||||||||||||||||||||||||||||||    
T  26934075 cttgtgaaaaagagagaaacacaagcaatgtaacattgtgattggtcaatgtcacccaactctatgtcacacaagtgcta 26933996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 3180122 - 3180062
Alignment:
Q  20 cacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  3180122 cacaaacattgtgacattatgattgatcaatgtcacccaactctatgtcacacaagtgcta 3180062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16439219 - 16439164
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  16439219 cttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatgtcacc 16439164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 16802525 - 16802446
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    ||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||| | ||||| ||  ||||||||    
T  16802525 cttgtaaaagagagagaaacacaaatattgttacattgtgattggccaatgtcacccaaatttatgttacctaagtgcta 16802446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 3180118 - 3180208
Alignment:
Q  2 ttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcac--------ccaactctatgtcacacaagtgctatccg 84  Q
    |||||||||||||||||||||||  |||||| ||||||||||||||||||||||        |||||||||||| ||||||||||||||||    
T  3180118 ttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgtcaccaatgttaccaactctatgtgacacaagtgctatccg 3180208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 16439221 - 16439277
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 83  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| || |||||    
T  16439221 attgtgacattgtgattgatcaatgtcacccaactctatgtcacacaaatgttatcc 16439277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 19655239 - 19655184
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||    
T  19655239 cttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacc 19655184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 38134433 - 38134508
Alignment:
Q  4 gtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgct 79  Q
    |||||||||| ||||||||||  |||||||||||||||||| ||||| ||| ||||||||||||| | ||||||||    
T  38134433 gtgaaagagaaagaaacacaagcattgtgacattgtgattggccaatatcatccaactctatgtcgcccaagtgct 38134508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 12913884 - 12913829
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||| ||||||  |||||||||||||||||| |||||||||||    
T  12913884 cttgtgaaagagagagatacacaagaattgtgacattgtgattggccaatgtcacc 12913829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 19598413 - 19598358
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||||||  ||||||  ||||||||||||||||||||||    
T  19598413 cttgtgaaagagagagaaacacaagcattgtggtattgtgattgaccaatgtcacc 19598358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 29699448 - 29699393
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||||||  |||||| ||||||||||| |||||||||||    
T  29699448 cttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 29699393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 2953246 - 2953204
Alignment:
Q  34 cattgtgattgaccaatgtcacccaactctatgtcacacaagt 76  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  2953246 cattgtgattgaccaatgtcacccaactctatgtcacccaagt 2953204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 6912352 - 6912294
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccga 85  Q
    |||||||||||||||||||| ||||||| | |||||||||||| |||||||||| ||||    
T  6912352 attgtgacattgtgattgactaatgtcaactaactctatgtcatacaagtgctacccga 6912294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 16971254 - 16971295
Alignment:
Q  45 accaatgtcacccaactctatgtcacacaagtgctatccgag 86  Q
    |||||||||||||||||||||||||| ||||||||| |||||    
T  16971254 accaatgtcacccaactctatgtcacccaagtgctacccgag 16971295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 2356345 - 2356274
Alignment:
Q  11 agagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 83  Q
    ||||||||||||||  ||| | ||||||| |||| | ||||||||| ||||||||||||||||| ||||||||    
T  2356345 agagagaaacacaagcattataacattgtaattgcctaatgtcacc-aactctatgtcacacaaatgctatcc 2356274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 2356381 - 2356416
Alignment:
Q  45 accaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||| |||||||||||||||||||||||||    
T  2356381 accaatgtcatccaactctatgtcacacaagtgcta 2356416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 2953300 - 2953335
Alignment:
Q  45 accaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||||||||||||||||||| |||||||||    
T  2953300 accaatgtcacccaactctatgtcacccaagtgcta 2953335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 39031208 - 39031263
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||| ||||||| ||||||||| ||| ||||||||||| || |||||||    
T  39031208 cttgtgaaagaaagagaaatacaaatattatgatattgtgattgatcagtgtcacc 39031263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 291177 - 291123
Alignment:
Q  2 ttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    |||||||||||| ||||| ||||  |||||| ||||||||||| |||||||||||    
T  291177 ttgtgaaagagaaagaaatacaagcattgtggcattgtgattggccaatgtcacc 291123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 32485659 - 32485697
Alignment:
Q  45 accaatgtcacccaactctatgtcacacaagtgctatcc 83  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  32485659 accaatgtcacccaactctgtgtcacacaagtgttatcc 32485697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 74
Target Start/End: Original strand, 12913913 - 12913942
Alignment:
Q  45 accaatgtcacccaactctatgtcacacaa 74  Q
    ||||||||||||||||||||||||||||||    
T  12913913 accaatgtcacccaactctatgtcacacaa 12913942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 16802527 - 16802584
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccg 84  Q
    ||||||||||| ||||||  ||||||||| ||||||||| ||||  ||||||||||||    
T  16802527 attgtgacattctgattggtcaatgtcactcaactctatatcacttaagtgctatccg 16802584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 291173 - 291209
Alignment:
Q  20 cacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  291173 cacaaacattgtgacattgtgattgatcaatgtcacc 291209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 2093994 - 2094062
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtca 69  Q
    ||||||||||||||||||||||||  ||| ||| | |||||||   |||| |||||||| |||||||||    
T  2093994 cttgtgaaagagagagaaacacaagcattatgatagtgtgattagtcaatatcacccaattctatgtca 2094062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 50)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 29371449 - 29371367
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 83  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||| ||| ||||||||    
T  29371449 cttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatgtcacctaactctatgtcacccaaatgctatcc 29371367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 15220892 - 15220810
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 83  Q
    ||||||||||||||||||||||||  ||||||| || ||||||||||||||||||||||||| ||||||| ||||||||||||    
T  15220892 cttgtgaaagagagagaaacacaagcattgtgagatcgtgattgaccaatgtcacccaactccatgtcacccaagtgctatcc 15220810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 5694946 - 5695004
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaa 59  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5694946 cttgtgaaagagagagaaacacaaatattgtgacattgtaattgaccaatgtcacccaa 5695004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 8337909 - 8337983
Alignment:
Q  2 ttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagt 76  Q
    |||||||||||||||||||||||| |||||| |||||||||||  |||||||||||||||||||||||| |||||    
T  8337909 ttgtgaaagagagagaaacacaaacattgtggcattgtgattggtcaatgtcacccaactctatgtcacccaagt 8337983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 4609079 - 4609136
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccg 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4609079 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtactatccg 4609136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 36290464 - 36290556
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattg---------accaatgtcacccaactctatgtcacacaagtgctatccg 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||| ||||| |||||||    
T  36290464 cttgtgaaagagagagaaacacaaatattgtgacattgtgattggtcaatgccaccaatgtcacccaactctatgtcacccaagtactatccg 36290556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 34062289 - 34062221
Alignment:
Q  2 ttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcac 70  Q
    |||||||||||||||||||| ||  |||||| ||||||||||| |||||||||||||||||||||||||    
T  34062289 ttgtgaaagagagagaaacataagcattgtggcattgtgattggccaatgtcacccaactctatgtcac 34062221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 46334003 - 46334078
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagt 76  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||  |||||||| ||||||||||||||| |||||    
T  46334003 cttgtgaaagagagaaaaacacaagcattgtgacattgtgattggtcaatgtcatccaactctatgtcacccaagt 46334078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 49444976 - 49445043
Alignment:
Q  9 agagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagt 76  Q
    ||||||||||||||||  |||||| ||||||||||| ||||||||||||||||||||||||| |||||    
T  49444976 agagagagaaacacaagcattgtggcattgtgattggccaatgtcacccaactctatgtcacccaagt 49445043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 741559 - 741617
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaa 59  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||    
T  741559 cttgtgaaagagagagaaacacaagcattgtgacattgtgatcgaccaatgtcacccaa 741617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 47303475 - 47303397
Alignment:
Q  2 ttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||||||||||||||||| ||| ||||||||||||||  |||| ||||| |||||||| |||| |||||||||    
T  47303475 ttgtgaaagagagagaaacacaaacattatgacattgtgattggtcaatatcacctaactctatatcactcaagtgcta 47303397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 47303471 - 47303525
Alignment:
Q  20 cacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaa 74  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  47303471 cacaaacattgtgacattgtgattgaccaatgtcacctaactctatgtcacacaa 47303525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 1819544 - 1819487
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccg 84  Q
    ||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  1819544 attgtgacattgtgattgatcaatgtcacccaactctatgtcattcaagtgctatccg 1819487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 48823940 - 48823887
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  48823940 attgtgacattgtgattggccaatgtcacccaactctatgtcacccaagtgcta 48823887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 9157393 - 9157449
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 83  Q
    ||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  9157393 attgtgatattgtgattgatcaatgtcaaccaactctatgtcacacaagtgctatcc 9157449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 37155127 - 37155072
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||||||  |||||||||||||||||| |||||||||||    
T  37155127 cttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 37155072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 46334001 - 46333942
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccgag 86  Q
    |||||||||||||||||| ||||||||| ||||||||||||||| ||||||||| |||||    
T  46334001 attgtgacattgtgattggccaatgtcatccaactctatgtcacccaagtgctacccgag 46333942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 1091601 - 1091686
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattg---------accaatgtcacccaactctatgtcacacaagtg 77  Q
    ||||||||||||||||||||||||| ||||||||||||||||||         |||||| ||||||||||||||||||| ||||||    
T  1091601 cttgtgaaagagagagaaacacaaacattgtgacattgtgattggtcaaagtcaccaatatcacccaactctatgtcacccaagtg 1091686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 9157391 - 9157306
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattg---------accaatgtcacccaactctatgtcacacaagtg 77  Q
    |||| |||||||||||||||||||  ||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  9157391 cttgagaaagagagagaaacacaagcattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtg 9157306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 33219654 - 33219573
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatc 82  Q
    ||||||||||||||| ||||||||  ||||| ||||||||||||| |||||||| |||| |||| ||||| ||||| |||||    
T  33219654 cttgtgaaagagagaaaaacacaagcattgtaacattgtgattgatcaatgtcatccaattctacgtcactcaagtactatc 33219573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 48605009 - 48604964
Alignment:
Q  20 cacaaatattgtgacattgtgattgaccaatgtcacccaactctat 65  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  48605009 cacaaatattgtgacattgtgattgaccaatgtcacctaactctat 48604964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 4609077 - 4609022
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||||||| |||||||||||||||| |  ||||||||||    
T  4609077 cttgtgaaagagagagaaacacaaacattgtgacattgtgatgggtcaatgtcacc 4609022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 28928832 - 28928781
Alignment:
Q  29 tgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||||||||| ||||||||||| ||||||||||||| |||||||||    
T  28928832 tgtgacattgtgattggccaatgtcaccaaactctatgtcacccaagtgcta 28928781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 29179654 - 29179709
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||||||  |||||| ||||||||||| |||||||||||    
T  29179654 cttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 29179709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 38674570 - 38674629
Alignment:
Q  11 agagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcac 70  Q
    ||||||||||||||  ||||||||||| |||||| ||||| |||||||||||||||||||    
T  38674570 agagagaaacacaagcattgtgacattatgattggccaatatcacccaactctatgtcac 38674629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 5694937 - 5694887
Alignment:
Q  35 attgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccga 85  Q
    |||||||||||||||||||||| ||||||||||||| |||||| |||||||    
T  5694937 attgtgattgaccaatgtcaccaaactctatgtcactcaagtgttatccga 5694887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 37155122 - 37155180
Alignment:
Q  20 cacaaatattgtgacattgtgattgaccaatgtcacccaactcta-tgtcacacaagtg 77  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||| |||||| ||||||    
T  37155122 cacaagtattgtgacattgtgattggccaatgtcacccaactctattgtcacccaagtg 37155180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 48498496 - 48498442
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcac 55  Q
    ||||||||||||||||||||||||| ||||||  ||| |||||||||||||||||    
T  48498496 cttgtgaaagagagagaaacacaaacattgtggtattatgattgaccaatgtcac 48498442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 32157608 - 32157665
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccg 84  Q
    ||||||||| |||||||||||||||||||| ||||||||||||  ||||| |||||||    
T  32157608 attgtgacactgtgattgaccaatgtcaccaaactctatgtcatccaagtactatccg 32157665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 8337913 - 8337854
Alignment:
Q  20 cacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||| |||||||||||||||||||||||||||| |||||||||| ||||  ||||||||    
T  8337913 cacaaacattgtgacattgtgattgaccaatgtca-ccaactctatatcacctaagtgcta 8337854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 34062285 - 34062345
Alignment:
Q  20 cacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||| ||||||||||||||||||  ||||||||||||||||||||| || ||| |||||    
T  34062285 cacaaacattgtgacattgtgattggtcaatgtcacccaactctatgttacccaaatgcta 34062345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 48993974 - 48994058
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattg---------accaatgtcacccaactctatgtcacacaagt 76  Q
    ||||||||||||||||||||||||  |||||| |||||||||||         |||||||||||||||||||||||||| |||||    
T  48993974 cttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 48994058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 5995450 - 5995399
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgt 52  Q
    ||||||||||||||||||||||||  |||||| ||||||||||| |||||||    
T  5995450 cttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgt 5995399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 32540805 - 32540860
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||  ||||||||||    
T  32540805 cttgtgaaagagagagaaacacaagcattgtaacattgtgattggtcaatgtcacc 32540860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 44706841 - 44706896
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||||||  |||| | ||||||||||| |||||||||||    
T  44706841 cttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtcacc 44706896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 17127621 - 17127675
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcac 55  Q
    ||||||||||||||||||||||||  ||||||||||| ||||||  |||||||||    
T  17127621 cttgtgaaagagagagaaacacaagcattgtgacattttgattggtcaatgtcac 17127675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 21630118 - 21630068
Alignment:
Q  6 gaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    |||||||||||||||||||  ||||||||||||||||||  ||||||||||    
T  21630118 gaaagagagagaaacacaagcattgtgacattgtgattggtcaatgtcacc 21630068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 28928836 - 28928911
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccg 84  Q
    |||||||||||||||||||||||||        || |||||||| ||||||||||| |||||||| |||| |||||||||||||    
T  28928836 cttgtgaaagagagagaaacacaaa--------cactgtgattggccaatgtcaccaaactctatatcactcaagtgctatccg 28928911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 38674560 - 38674511
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagt 76  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||| |||||    
T  38674560 attgtgacattgtgattggccaatatcacccaactccatgtcacccaagt 38674511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 19711235 - 19711192
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcac 70  Q
    ||||| ||||||||||||  ||||||||||||||||||||||||    
T  19711235 attgtaacattgtgattggtcaatgtcacccaactctatgtcac 19711192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 36290463 - 36290428
Alignment:
Q  34 cattgtgattgaccaatgtcacccaactctatgtca 69  Q
    ||||||||||| ||||||||||||||||||||||||    
T  36290463 cattgtgattggccaatgtcacccaactctatgtca 36290428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 45728368 - 45728325
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattg 44  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||    
T  45728368 cttgtgaaagagagagaaacacaagcattgtgatattgtgattg 45728325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 48605005 - 48605064
Alignment:
Q  2 ttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaact 61  Q
    ||||||||||||||||||| |||  ||||||||||| | |||| |||||||||| |||||    
T  48605005 ttgtgaaagagagagaaacgcaagcattgtgacattataattggccaatgtcactcaact 48605064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 80
Target Start/End: Complemental strand, 48993945 - 48993910
Alignment:
Q  45 accaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||||||||||||||||||| |||||||||    
T  48993945 accaatgtcacccaactctatgtcacccaagtgcta 48993910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 80
Target Start/End: Complemental strand, 49444941 - 49444906
Alignment:
Q  45 accaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||||||||||||||||||| |||||||||    
T  49444941 accaatgtcacccaactctatgtcacccaagtgcta 49444906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 741557 - 741499
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccga 85  Q
    ||||||||||||||||||  |||||||||| || ||||| |||| ||||||||| ||||    
T  741557 attgtgacattgtgattgggcaatgtcacctaattctatatcacgcaagtgctacccga 741499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 29371478 - 29371516
Alignment:
Q  45 accaatgtcacccaactctatgtcacacaagtgctatcc 83  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  29371478 accaatgtcacctagctctatgtcacacaagtgctatcc 29371516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 28395708 - 28395663
Alignment:
Q  11 agagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||  ||||||||||||||||||  ||||||||||    
T  28395708 agagagaaacacaagcattgtgacattgtgattggtcaatgtcacc 28395663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 4579222 - 4579171
Alignment:
Q  28 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    ||||||||||||| ||| ||||||||| |||| |||||||||| |||||||||    
T  4579222 ttgtgacattgtggttggccaatgtca-ccaattctatgtcacccaagtgcta 4579171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 7788329 - 7788373
Alignment:
Q  33 acattgtgattgaccaatgtcacccaactctatgtcacacaagtg 77  Q
    |||||||||||||  |||||||||||| |||||||||| ||||||    
T  7788329 acattgtgattgagtaatgtcacccaattctatgtcacccaagtg 7788373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 63838 - 63763
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagt 76  Q
    ||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||| |||||    
T  63838 cttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatgtcacccaagt 63763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 63840 - 63883
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcac 70  Q
    |||||||||||||||||| |||||||||||||||||||| ||||    
T  63840 attgtgacattgtgattggccaatgtcacccaactctatatcac 63883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 29053371 - 29053446
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagt 76  Q
    ||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||| |||||    
T  29053371 cttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatgtcacccaagt 29053446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 27028854 - 27028905
Alignment:
Q  5 tgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27028854 tgaaagagagagaaacacaaacattgtgacattgtgattgaccaatgtcacc 27028905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 30165334 - 30165388
Alignment:
Q  31 tgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccga 85  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  30165334 tgacattgtgattgaccaatgtcacccaactctatatcacacaagtcctatccga 30165388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 4649393 - 4649332
Alignment:
Q  9 agagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcac 70  Q
    ||||||||||||||||  |||||  |||||||||||||||||||||||||||||||||||||    
T  4649393 agagagagaaacacaagcattgtagcattgtgattgaccaatgtcacccaactctatgtcac 4649332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 7671968 - 7672025
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcaccca 58  Q
    ||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||    
T  7671968 cttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcaccca 7672025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 42628376 - 42628307
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcac 70  Q
    ||||||||||||||||||||| ||  |||||| |||||||||||  ||||||||||||||||||||||||    
T  42628376 cttgtgaaagagagagaaacataagcattgtggcattgtgattggtcaatgtcacccaactctatgtcac 42628307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 22764757 - 22764812
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||    
T  22764757 cttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatatcacc 22764812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 34854752 - 34854807
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||    
T  34854752 cttgtgaaagagatagaaacacaaacattgtggcattgtgattgaccaatgtcacc 34854807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 10419539 - 10419485
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcac 55  Q
    |||||||||||||||||||||||| |||||| ||||| |||||||||||||||||    
T  10419539 cttgtgaaagagagagaaacacaagtattgtaacattatgattgaccaatgtcac 10419485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 27028848 - 27028795
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||||||||||| ||||||| ||||||||||||||||| |||||||||    
T  27028848 attgtgacattgtgattgtccaatgttacccaactctatgtcacccaagtgcta 27028795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 38975886 - 38975835
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgt 52  Q
    ||||||||||||||||||||||||  |||||| |||||||||||||||||||    
T  38975886 cttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgt 38975835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 4649408 - 4649462
Alignment:
Q  30 gtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccg 84  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||| |||| ||||    
T  4649408 gtgacattgtgattgaccaatgtcaccaaactctatgtcactcaattgctgtccg 4649462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 11016949 - 11016895
Alignment:
Q  2 ttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    |||||||||||||||||||||||  |||||| ||||||||||| |||||||||||    
T  11016949 ttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 11016895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 41018283 - 41018230
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||| ||||||||||||| ||||||||||||||||||||||||  |||||||||    
T  41018283 attgggacattgtgattggccaatgtcacccaactctatgtcatccaagtgcta 41018230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 49110057 - 49110097
Alignment:
Q  263 gagtgagaggcaagaagagcaagaatgcgatccaacatttt 303  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  49110057 gagtgagaggcaagaagagcaagaatgcgatctaacatttt 49110097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 4290626 - 4290571
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    |||||||||||||||||||||| |  |||||| ||||||||||||||||| |||||    
T  4290626 cttgtgaaagagagagaaacacgagcattgtggcattgtgattgaccaatatcacc 4290571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 15027623 - 15027568
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||||||| ||||||  ||||||||||  ||||||||||    
T  15027623 cttgtgaaagagagagaaacacaaacattgtggtattgtgattggtcaatgtcacc 15027568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 48000816 - 48000769
Alignment:
Q  3 tgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaat 50  Q
    ||||||||||||||||||||||| |||||| ||||||||||| |||||    
T  48000816 tgtgaaagagagagaaacacaaacattgtggcattgtgattggccaat 48000769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 34854750 - 34854700
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtg 77  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||| ||||||    
T  34854750 attgtggcattgtgattggccaatgtcaccaaactctatgtcacccaagtg 34854700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 45231908 - 45231962
Alignment:
Q  2 ttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    |||||||||||||||||||| ||  ||||| |||||||||||| |||||||||||    
T  45231908 ttgtgaaagagagagaaacaaaagcattgtaacattgtgattggccaatgtcacc 45231962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 49109931 - 49109992
Alignment:
Q  134 atcaagggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgcaacaggagtcat 195  Q
    |||||||| || |||||||||||||| |||||||||||||| || || ||||||| ||||||    
T  49109931 atcaagggacccaatgaaacaccatcggaattaggagcaaagaatttggcaacagaagtcat 49109992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 25001399 - 25001347
Alignment:
Q  30 gtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatc 82  Q
    ||||||||||||||| ||||||||||| |||||||| |||| ||| |||||||    
T  25001399 gtgacattgtgattgtccaatgtcaccaaactctatttcacccaaatgctatc 25001347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 41018285 - 41018369
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattg---------accaatgtcacccaactctatgtcacacaagt 76  Q
    ||||||||||||||||||||| ||  |||||| |||||||||||         |||||||||||||||||||||||||| |||||    
T  41018285 cttgtgaaagagagagaaacataagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 41018369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 11016979 - 11017014
Alignment:
Q  45 accaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||||||||||||||||||| |||||||||    
T  11016979 accaatgtcacccaactctatgtcacccaagtgcta 11017014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 42628405 - 42628440
Alignment:
Q  45 accaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||||||||||||||||||| |||||||||    
T  42628405 accaatgtcacccaactctatgtcacccaagtgcta 42628440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 45231902 - 45231859
Alignment:
Q  34 cattgtgattgaccaatgtcacccaactctatgtcacacaagtg 77  Q
    |||||||||||  |||||||||||||||||||||||| ||||||    
T  45231902 cattgtgattggtcaatgtcacccaactctatgtcacccaagtg 45231859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 27028795 - 27028754
Alignment:
Q  15 agaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||  |||||||||||||||||| |||||||||||    
T  27028795 agaaacacaagcattgtgacattgtgattgtccaatgtcacc 27028754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 30217511 - 30217564
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtca 54  Q
    ||||||||||||||||||||| ||| ||| ||| |||||||||| | |||||||    
T  30217511 cttgtgaaagagagagaaacataaacattttgatattgtgattggcgaatgtca 30217564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 29053362 - 29053326
Alignment:
Q  34 cattgtgattgaccaatgtcacccaactctatgtcac 70  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  29053362 cattgtgattggccaatgtcaccaaactctatgtcac 29053326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 42375091 - 42375016
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagt 76  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  42375091 cttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgtcacccaactctatgtcacccaagt 42375016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 55090053 - 55090135
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 83  Q
    ||||||||||||||||| ||||||  ||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||    
T  55090053 cttgtgaaagagagagagacacaagcattgtgacattgtgattgaccaatgtcactcaactctatgtcacccaagtgatatcc 55090135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 40789260 - 40789179
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatc 82  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||  |||||| ||||    
T  40789260 cttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatgtcaccaaactctatgtcattcaagtgttatc 40789179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 52028630 - 52028554
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtg 77  Q
    ||||||||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||||||| ||||||    
T  52028630 cttgtgaaagagagagaaacacaaacattgtgacatcgtgattggccaatatcacccaactctatgtcacccaagtg 52028554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 47404642 - 47404717
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagt 76  Q
    |||||||||||||||||||| |||  |||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  47404642 cttgtgaaagagagagaaacccaagcattgtggcattgtgattgaccaatgtcacccaactctatgtcacccaagt 47404717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 47404640 - 47404587
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47404640 attgtgacattgtgattgaccaatgtcacccaactctatgtcacccaagtgcta 47404587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 50384160 - 50384107
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  50384160 attgtgacattgtgattggccaatgtcacccaactctatgtcacccaagtgcta 50384107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 55090051 - 55089995
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 83  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||    
T  55090051 attgtgacattgtgattgaccaatgtcactcaactctatgtcacccaagtgatatcc 55089995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 31430516 - 31430457
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccgag 86  Q
    ||||||||||||||||||  |||||||||||||||||||||||| ||||||||| |||||    
T  31430516 attgtgacattgtgattggtcaatgtcacccaactctatgtcacccaagtgctacccgag 31430457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 53954691 - 53954616
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagt 76  Q
    |||||||||||| ||||||||| |  |||||||||||||||||| |||||||||||||||| ||| |||| |||||    
T  53954691 cttgtgaaagagtgagaaacactagcattgtgacattgtgattggccaatgtcacccaactttatatcacccaagt 53954616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 24006151 - 24006203
Alignment:
Q  33 acattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccga 85  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||||||||||    
T  24006151 acattgtgattggtcaatgtcacccaactctatgtcacccaagtgctatccga 24006203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 38714903 - 38714835
Alignment:
Q  2 ttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcac 70  Q
    |||||||||| | ||||||| ||||||| |||||||||||||| ||||| ||||| |||||||||||||    
T  38714903 ttgtgaaagaaatagaaacataaatattatgacattgtgattggccaatatcacctaactctatgtcac 38714835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 6271783 - 6271728
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||||||  |||||| ||||||||||| |||||||||||    
T  6271783 cttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 6271728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 23444326 - 23444381
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||||||  |||||| ||||||||||| |||||||||||    
T  23444326 cttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 23444381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 30861831 - 30861886
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||||||  |||||| ||||||||||| |||||||||||    
T  30861831 cttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 30861886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 35682247 - 35682192
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||| |||||||||||| |||| |||||||||||||| |||||||||||    
T  35682247 cttgtgaaagatagagaaacacaagtattatgacattgtgattggccaatgtcacc 35682192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 47661923 - 47661868
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||||||  |||||| ||||||||||| |||||||||||    
T  47661923 cttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 47661868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 51265526 - 51265471
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||||||  |||||| ||||||||||| |||||||||||    
T  51265526 cttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 51265471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 55089932 - 55089889
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcac 70  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  55089932 attgtgacattgtgattgaccaatgtcactcaactctatgtcac 55089889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 24006125 - 24006072
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||| ||||||||||| |||||||||||||||| |||||||| |||||||||    
T  24006125 attgtgtcattgtgattggccaatgtcacccaactgtatgtcacccaagtgcta 24006072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 31430522 - 31430590
Alignment:
Q  5 tgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagt 76  Q
    |||||||||||||||||||||    ||| |||||| |||| ||||||||||||||||||||||||| |||||    
T  31430522 tgaaagagagagaaacacaaac---gtggcattgtaattggccaatgtcacccaactctatgtcacccaagt 31430590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 40789262 - 40789315
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||| |||||||||    
T  40789262 attgtgacattgtgattggccaatatcaccaaactctatgtcacccaagtgcta 40789315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 28693985 - 28693922
Alignment:
Q  20 cacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 83  Q
    |||||| ||||||| ||||||||||  |||||||| |||||| |||||||| ||||||||||||    
T  28693985 cacaaacattgtgatattgtgattggtcaatgtcatccaactttatgtcacccaagtgctatcc 28693922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 45591465 - 45591410
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatc 82  Q
    ||||||||||| |||||||| |||| ||||||||||||| ||||||||||| ||||    
T  45591465 attgtgacattatgattgacgaatgccacccaactctatatcacacaagtgttatc 45591410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 47762689 - 47762635
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcac 55  Q
    ||||||||||||||||||||| ||| ||||| ||||||||||||  |||||||||    
T  47762689 cttgtgaaagagagagaaacataaacattgtaacattgtgattggtcaatgtcac 47762635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 19184551 - 19184596
Alignment:
Q  36 ttgtgattgaccaatgtcacccaactctatgtcacacaagtgctat 81  Q
    |||||||||||||||||||||||||| || ||||| ||||||||||    
T  19184551 ttgtgattgaccaatgtcacccaactttacgtcacccaagtgctat 19184596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 52028632 - 52028673
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtc 68  Q
    |||||||||||||||||| |||||||||||||| ||||||||    
T  52028632 attgtgacattgtgattggccaatgtcacccaattctatgtc 52028673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 25618007 - 25617971
Alignment:
Q  47 caatgtcacccaactctatgtcacacaagtgctatcc 83  Q
    ||||||||||||||||||||||||||||||| |||||    
T  25618007 caatgtcacccaactctatgtcacacaagtgttatcc 25617971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 26186071 - 26186039
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaa 59  Q
    |||||||||||||||||||||||||||||||||    
T  26186071 attgtgacattgtgattgaccaatgtcacccaa 26186039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 45591467 - 45591520
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactc 62  Q
    |||||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  45591467 cttgtgaaagagagagaaacacaaa--------cattgtgattgaccaatgtcacccaactc 45591520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 42375120 - 42375155
Alignment:
Q  45 accaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||||||||||||||||||| |||||||||    
T  42375120 accaatgtcacccaactctatgtcacccaagtgcta 42375155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 53954720 - 53954755
Alignment:
Q  45 accaatgtcacccaactctatgtcacacaagtgcta 80  Q
    ||||||||||||||||||||||||||| ||||||||    
T  53954720 accaatgtcacccaactctatgtcacaaaagtgcta 53954755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 54716396 - 54716361
Alignment:
Q  35 attgtgattgaccaatgtcacccaactctatgtcac 70  Q
    ||||||||||| ||||||||||||||||||||||||    
T  54716396 attgtgattgatcaatgtcacccaactctatgtcac 54716361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 31532752 - 31532801
Alignment:
Q  7 aaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||| ||||| |||||||| |||||||||  ||||||||||    
T  31532752 aaagagagagaaatacaaacattgtgacgttgtgattggtcaatgtcacc 31532801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 9712900 - 9712848
Alignment:
Q  28 ttgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||| |||||| ||||||||||| ||  ||||||||| |||||||||    
T  9712900 ttgtgacattctgattggccaatgtcaccaaatgctatgtcacccaagtgcta 9712848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 6217281 - 6217356
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagt 76  Q
    ||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||| |||||    
T  6217281 cttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatgtcacccaagt 6217356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 2828661 - 2828586
Alignment:
Q  5 tgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    ||||||||||||||||||||  ||| |||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  2828661 tgaaagagagagaaacacaagcattttgacattgtgattggccaatgtcacccaactctatgtcacagaagtgcta 2828586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 14229410 - 14229488
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    ||||||||||||||||||||||||  |||||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  14229410 cttgtgaaagagagagaaacacaagcattgtgacattgtgattg-ccaatgtcatccaactctatgtcacccaagtgcta 14229488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 14464617 - 14464554
Alignment:
Q  20 cacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatcc 83  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14464617 cacaagtattgtgacattgtgattgaccaatgtcactcaactctatgtcacacaagtgctatcc 14464554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 29925627 - 29925702
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagt 76  Q
    ||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||| || |||||    
T  29925627 cttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatgttacccaagt 29925702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 2894044 - 2893968
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtg 77  Q
    ||||||||||||||||||| ||||  ||||||| |||||||||| ||||||||||||||||||||||||| ||||||    
T  2894044 cttgtgaaagagagagaaatacaagcattgtgagattgtgattggccaatgtcacccaactctatgtcacccaagtg 2893968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 38933668 - 38933599
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcac 70  Q
    ||||||||||||||||||||||||  |||||| |||||||||||  ||||||||||||||||||||||||    
T  38933668 cttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcacccaactctatgtcac 38933599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 37961787 - 37961712
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagt 76  Q
    ||||||||||||||||||||||||| ||| || ||||||||| |  |||||||||||||||||||| ||| |||||    
T  37961787 cttgtgaaagagagagaaacacaaacattatggcattgtgatcggtcaatgtcacccaactctatgccacccaagt 37961712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 14470649 - 14470692
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattg 44  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  14470649 cttgtgaaagagagagaaacacaaacattgtgacattgtgattg 14470692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 15011361 - 15011306
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||||||| |||||| ||||||||||| ||||| |||||    
T  15011361 cttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatatcacc 15011306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 14470620 - 14470582
Alignment:
Q  45 accaatgtcacccaactctatgtcacacaagtgctatcc 83  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14470620 accaatgtcacccaactctatgtcacacaagtgctatcc 14470582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 15011363 - 15011412
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagt 76  Q
    |||||||||||||||||| |||||||||| |||||||||||||| |||||    
T  15011363 attgtgacattgtgattggccaatgtcactcaactctatgtcacccaagt 15011412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 2143943 - 2144002
Alignment:
Q  15 agaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaa 74  Q
    ||||||||||  ||| |||||||||||||| |||| ||||| ||||||||||||||||||    
T  2143943 agaaacacaagcattatgacattgtgattggccaacgtcactcaactctatgtcacacaa 2144002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 2894046 - 2894089
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcac 70  Q
    ||||||||| |||||||||||||||||| |||||||||||||||    
T  2894046 attgtgacactgtgattgaccaatgtcatccaactctatgtcac 2894089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 29508748 - 29508803
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||||||  |||| | ||||||||||| |||||||||||    
T  29508748 cttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtcacc 29508803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37762058 - 37762113
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||| ||||||||    
T  37762058 cttgtgaaagagaaagaaacacaagcattgtgatattgtgattgacccatgtcacc 37762113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 6722031 - 6721977
Alignment:
Q  2 ttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    |||||||||||||||||||||||  ||||||| ||||||||||  ||||||||||    
T  6722031 ttgtgaaagagagagaaacacaagcattgtgatattgtgattggtcaatgtcacc 6721977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 8534227 - 8534174
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtca 54  Q
    ||||||||| ||||||||||||||||||| | ||||||| ||||| ||||||||    
T  8534227 cttgtgaaatagagagaaacacaaatatttttacattgtaattgatcaatgtca 8534174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 2828667 - 2828703
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactct 63  Q
    |||||||||||||||||| ||||||||||||||||||    
T  2828667 attgtgacattgtgattggccaatgtcacccaactct 2828703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 45213912 - 45213948
Alignment:
Q  47 caatgtcacccaactctatgtcacacaagtgctatcc 83  Q
    ||||||||||||||||||||||||||||||| |||||    
T  45213912 caatgtcacccaactctatgtcacacaagtgttatcc 45213948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16514505 - 16514450
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||||||  ||| || ||| ||||||| |||||||||||    
T  16514505 cttgtgaaagagagagaaacacaagcattatggcatagtgattggccaatgtcacc 16514450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 38933697 - 38933732
Alignment:
Q  45 accaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||||||||||||||||||| |||||||||    
T  38933697 accaatgtcacccaactctatgtcacccaagtgcta 38933732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 56
Target Start/End: Complemental strand, 14229408 - 14229379
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||||||||||||    
T  14229408 attgtgacattgtgattgaccaatgtcacc 14229379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 45)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 28700807 - 28700872
Alignment:
Q  136 caagggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgcaacaggagtcatgctata 201  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||    
T  28700807 caagggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacaggagtcatactata 28700872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 28625794 - 28625858
Alignment:
Q  137 aagggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgcaacaggagtcatgctata 201  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||    
T  28625794 aagggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacaggagtcatactata 28625858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 39851036 - 39850972
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctat 65  Q
    ||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||    
T  39851036 cttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactctat 39850972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 6296686 - 6296607
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||  |||||||||||||||||||||||  |||||||||    
T  6296686 cttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtcatccaagtgcta 6296607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 28636557 - 28636618
Alignment:
Q  140 ggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgcaacaggagtcatgctata 201  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||    
T  28636557 ggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacaggagtcatactata 28636618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 28644291 - 28644352
Alignment:
Q  140 ggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgcaacaggagtcatgctata 201  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||    
T  28644291 ggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacaggagtcatactata 28644352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 28653243 - 28653304
Alignment:
Q  140 ggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgcaacaggagtcatgctata 201  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||    
T  28653243 ggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacaggagtcatactata 28653304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 28726702 - 28726763
Alignment:
Q  140 ggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgcaacaggagtcatgctata 201  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||    
T  28726702 ggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacaggagtcatactata 28726763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 28731402 - 28731463
Alignment:
Q  140 ggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgcaacaggagtcatgctata 201  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||    
T  28731402 ggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacaggagtcatactata 28731463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 28740338 - 28740402
Alignment:
Q  137 aagggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgcaacaggagtcatgctata 201  Q
    ||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||    
T  28740338 aagggacctaatgaaacaccatcagaattaggagcaaaaaacctagcaacaggagtcatactata 28740402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 10086837 - 10086784
Alignment:
Q  2 ttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcac 55  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  10086837 ttgtgaaagagagagaaacacaaacattatgacattgtgattgaccaatgtcac 10086784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 28711713 - 28711774
Alignment:
Q  140 ggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgcaacaggagtcatgctata 201  Q
    |||||||||||||| |||||||||||||||||||||||| | |||||||||||||| |||||    
T  28711713 ggtcctaatgaaacgccatcagaattaggagcaaaaaacctagcaacaggagtcatactata 28711774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 28719060 - 28719121
Alignment:
Q  140 ggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgcaacaggagtcatgctata 201  Q
    |||||||||||||| |||||||||||||||||||||||| | |||||||||||||| |||||    
T  28719060 ggtcctaatgaaacgccatcagaattaggagcaaaaaacctagcaacaggagtcatactata 28719121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 34229724 - 34229777
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  34229724 attgtgatattgtgattgaccaatgtcacctaactctatgtcacacaagtgcta 34229777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5667178 - 5667123
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||    
T  5667178 cttgtgaaagagagagaaatacaagcattgtgacattgtgattgaccaatgtcacc 5667123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 34229722 - 34229631
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgacc---------aatgtcacccaactctatgtcacacaagtgctatcc 83  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||||          ||||||||||||||||||||||||||||||||||||    
T  34229722 cttgtgaaagagagagaaacacaagcattctgacattgtgattgactcatgtcactaatgtcacccaactctatgtcacacaagtgctatcc 34229631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 4958680 - 4958627
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtca 54  Q
    ||||||||||||||||||||||||| ||| |||||||||||||| |||||||||    
T  4958680 cttgtgaaagagagagaaacacaaacattatgacattgtgattggccaatgtca 4958627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 8243445 - 8243500
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||||||  |||||| |||||||||||||||| ||||||    
T  8243445 cttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaacgtcacc 8243500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 35441026 - 35441081
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||||||  |||||| ||||||||||| |||||||||||    
T  35441026 cttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 35441081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8796503 - 8796449
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcac 55  Q
    ||||||||||| ||||||||||||  |||||||||||||||||||||||| ||||    
T  8796503 cttgtgaaagatagagaaacacaagcattgtgacattgtgattgaccaatatcac 8796449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 8243443 - 8243390
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||| |||||||||||| ||||||||| |||||||||||||| |||||||||    
T  8243443 attgtggcattgtgattgatcaatgtcactcaactctatgtcacccaagtgcta 8243390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 5033242 - 5033158
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattg---------accaatgtcacccaactctatgtcacacaagt 76  Q
    ||||||||||||||||||||||||  |||||| |||||||||||         |||||||||||||||||||||||||| |||||    
T  5033242 cttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 5033158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 1880323 - 1880373
Alignment:
Q  29 tgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||||||||||||||||||| |||| |||||||||| |||||||||    
T  1880323 tgtgacattgtgattgaccaatgtca-ccaattctatgtcacccaagtgcta 1880373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 31159932 - 31159856
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccga 85  Q
    ||||||||||||||||||||| |||||||||||        |||| ||||||||||||| | |||||||| ||||||||||||||    
T  31159932 cttgtgaaagagagagaaacaaaaatattgtga--------ttgatcaatgtcacccaattttatgtcactcaagtgctatccga 31159856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 34541858 - 34541799
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctatccgag 86  Q
    ||||||| ||| |||||| |||||||||||||||| |||||||| ||||||||| |||||    
T  34541858 attgtgatattatgattggccaatgtcacccaactttatgtcacccaagtgctacccgag 34541799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 39139844 - 39139897
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||||||||||||||||||||||| ||  ||||||||| ||| |||||    
T  39139844 attgtgacattgtgattgaccaatgtcaccaaatactatgtcacccaaatgcta 39139897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 43844534 - 43844619
Alignment:
Q  9 agagagagaaacacaaatattgtgacattgtgattg---------accaatgtcacccaactctatgtcacacaagtgctatccga 85  Q
    ||||||||||||||||  ||||||||||||||||||         |||||||||| ||||||||||||||| ||| ||||||||||    
T  43844534 agagagagaaacacaagcattgtgacattgtgattgatcaatatcaccaatgtcatccaactctatgtcacccaattgctatccga 43844619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 304
Target Start/End: Original strand, 28700940 - 28700972
Alignment:
Q  272 gcaagaagagcaagaatgcgatccaacattttg 304  Q
    |||||||||||||||||||||||||||||||||    
T  28700940 gcaagaagagcaagaatgcgatccaacattttg 28700972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 304
Target Start/End: Original strand, 28740470 - 28740502
Alignment:
Q  272 gcaagaagagcaagaatgcgatccaacattttg 304  Q
    |||||||||||||||||||||||||||||||||    
T  28740470 gcaagaagagcaagaatgcgatccaacattttg 28740502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 33841648 - 33841732
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattg---------accaatgtcacccaactctatgtcacacaagt 76  Q
    ||||||||||||||||||||||||  |||||| |||| ||||||         |||||||||||||||||||||||||| |||||    
T  33841648 cttgtgaaagagagagaaacacaagcattgtggcattctgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 33841732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 5033271 - 5033306
Alignment:
Q  45 accaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||||||||||||||||||| |||||||||    
T  5033271 accaatgtcacccaactctatgtcacccaagtgcta 5033306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 304
Target Start/End: Original strand, 28644417 - 28644452
Alignment:
Q  269 gaggcaagaagagcaagaatgcgatccaacattttg 304  Q
    |||||||||| |||||||||||||||||||||||||    
T  28644417 gaggcaagaacagcaagaatgcgatccaacattttg 28644452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 304
Target Start/End: Original strand, 28711839 - 28711874
Alignment:
Q  269 gaggcaagaagagcaagaatgcgatccaacattttg 304  Q
    |||||||||| |||||||||||||||||||||||||    
T  28711839 gaggcaagaacagcaagaatgcgatccaacattttg 28711874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 304
Target Start/End: Original strand, 28719186 - 28719221
Alignment:
Q  269 gaggcaagaagagcaagaatgcgatccaacattttg 304  Q
    |||||||||| |||||||||||||||||||||||||    
T  28719186 gaggcaagaacagcaagaatgcgatccaacattttg 28719221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 80
Target Start/End: Complemental strand, 33841619 - 33841584
Alignment:
Q  45 accaatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||||||||||||||||||| |||||||||    
T  33841619 accaatgtcacccaactctatgtcacccaagtgcta 33841584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 36766215 - 36766176
Alignment:
Q  31 tgacattgtgattgaccaatgtcacccaactctatgtcac 70  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  36766215 tgacgttgtgatcgaccaatgtcacccaactctatgtcac 36766176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 45191188 - 45191239
Alignment:
Q  5 tgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||| ||||| ||||| ||||||  ||||||||||    
T  45191188 tgaaagagagagaaacacaaacattgtaacattttgattggtcaatgtcacc 45191239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 85
Target Start/End: Complemental strand, 34229632 - 34229603
Alignment:
Q  56 ccaactctatgtcacacaagtgctatccga 85  Q
    ||||||||||||||||||||||||||||||    
T  34229632 ccaactctatgtcacacaagtgctatccga 34229603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 34541860 - 34541929
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcac 70  Q
    ||||||||||||||||||||||||  |||||| |||| || | |  ||||||||| ||||||||| ||||    
T  34541860 cttgtgaaagagagagaaacacaagcattgtggcattttgctaggtcaatgtcactcaactctatatcac 34541929  T

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Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 2581895 - 2581927
Alignment:
Q  55 cccaactctatgtcacacaagtgctatccgagt 87  Q
    |||||||||||||||| ||||||||||||||||    
T  2581895 cccaactctatgtcacccaagtgctatccgagt 2581927  T

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Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 13470061 - 13470105
Alignment:
Q  26 tattgtgacattgtgattgaccaatgtcacccaactctatgtcac 70  Q
    |||||| |||||||||||||||||||||||| ||  |||||||||    
T  13470061 tattgtaacattgtgattgaccaatgtcaccaaatgctatgtcac 13470105  T

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Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 304
Target Start/End: Original strand, 28625926 - 28625958
Alignment:
Q  272 gcaagaagagcaagaatgcgatccaacattttg 304  Q
    ||||||||| |||||||||||||||||||||||    
T  28625926 gcaagaagaacaagaatgcgatccaacattttg 28625958  T

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Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 304
Target Start/End: Original strand, 28726831 - 28726863
Alignment:
Q  272 gcaagaagagcaagaatgcgatccaacattttg 304  Q
    ||||||||| |||||||||||||||||||||||    
T  28726831 gcaagaagaacaagaatgcgatccaacattttg 28726863  T

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Target: chr8; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 304
Target Start/End: Original strand, 28731531 - 28731563
Alignment:
Q  272 gcaagaagagcaagaatgcgatccaacattttg 304  Q
    ||||||||| |||||||||||||||||||||||    
T  28731531 gcaagaagaacaagaatgcgatccaacattttg 28731563  T

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Target: chr8; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 37618782 - 37618735
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaag 75  Q
    |||||||||||||||||| ||||||||| |||| |||||||||| ||||    
T  37618782 attgtgacattgtgattggccaatgtca-ccaattctatgtcacccaag 37618735  T

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Target: scaffold0591 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 5487 - 5426
Alignment:
Q  140 ggtcctaatgaaacaccatcagaattaggagcaaaaaacttcgcaacaggagtcatgctata 201  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||    
T  5487 ggtcctaatgaaacaccatcagaattaggagcaaaaaacctagcaacaggagtcatactata 5426  T

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Target: scaffold0591; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 304
Target Start/End: Complemental strand, 5358 - 5326
Alignment:
Q  272 gcaagaagagcaagaatgcgatccaacattttg 304  Q
    |||||||||||||||||||||||||||||||||    
T  5358 gcaagaagagcaagaatgcgatccaacattttg 5326  T

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Target: scaffold0586 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 7104 - 7196
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcac--------ccaactctatgtcacacaagtgctatccga 85  Q
    ||||||||||||||||||||||||  |||||||||||||||||| ||||||||||        |||||||||||||||||||||| |||||||    
T  7104 cttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcaccaatgtcaccaactctatgtcacacaagtgttatccga 7196  T

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Target: scaffold0016 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 49760 - 49829
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcac 70  Q
    ||||||||||| ||||||||||||  |||||| ||||||||||| ||||||||||| |||||||||||||    
T  49760 cttgtgaaagaaagagaaacacaagcattgtggcattgtgattggccaatgtcacctaactctatgtcac 49829  T

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Target: scaffold0016; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 49729 - 49696
Alignment:
Q  47 caatgtcacccaactctatgtcacacaagtgcta 80  Q
    |||||||||||||||||||||||| |||||||||    
T  49729 caatgtcacccaactctatgtcacccaagtgcta 49696  T

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Target: scaffold1033 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 2296 - 2350
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctat 81  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  2296 attgtgacattgtgattgatcaatgtcgcccaattctatgtcacacaagtgctat 2350  T

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Target: scaffold1029 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 2296 - 2350
Alignment:
Q  27 attgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtgctat 81  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  2296 attgtgacattgtgattgatcaatgtcgcccaattctatgtcacacaagtgctat 2350  T

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Target: scaffold0481 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 2949 - 2899
Alignment:
Q  20 cacaaatattgtgacattgtgattgaccaatgtcacccaactctatgtcac 70  Q
    |||||| ||||||||||||||||||  |||| |||||||||||||||||||    
T  2949 cacaaacattgtgacattgtgattggtcaatatcacccaactctatgtcac 2899  T

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Target: scaffold0180 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 19148 - 19113
Alignment:
Q  47 caatgtcacccaactctatgtcacacaagtgctatc 82  Q
    |||||||||||||||||||||||||||| |||||||    
T  19148 caatgtcacccaactctatgtcacacaaatgctatc 19113  T

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Target: scaffold0161 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 27277 - 27332
Alignment:
Q  1 cttgtgaaagagagagaaacacaaatattgtgacattgtgattgaccaatgtcacc 56  Q
    ||||||||||||||||||||| ||  |||||| ||||||||||| ||||| |||||    
T  27277 cttgtgaaagagagagaaacagaagcattgtggcattgtgattggccaatatcacc 27332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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