View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_low_66 (Length: 323)
Name: NF1084_low_66
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_66 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 26549571 - 26549344
Alignment:
| Q |
1 |
ttttcgaccatgttcagttgataaaaattactgtgttagttttttgatgatgaaaagctcaactctgttatttcttaaaggaccttttgtgagcagaatc |
100 |
Q |
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| T |
26549571 |
ttttcgaccatgttcagttgataaaaattactgtgttagttttttgatgatgaaaagctcaactctgttatttcttaaaggaccttttgtgagcagaatc |
26549472 |
T |
|
| Q |
101 |
tttttataattaaagctttgtagttgacctaacgagggaaactctgcagcaactccagagccatttagtgtttactacttaaggtggttagttgatttga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||| |
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| T |
26549471 |
tttttataattaaagctttgtagttgacctaacgagggaaactctgcagcaactccagagccatttattgtttactactcaaggtggctagttgatttga |
26549372 |
T |
|
| Q |
201 |
acctaaaactctgatctgtgtttaaact |
228 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
26549371 |
acctaaaactctgatctgtgtttaaact |
26549344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 224
Target Start/End: Complemental strand, 26552467 - 26552319
Alignment:
| Q |
75 |
ttaaaggaccttttgtgagcagaatctttttataattaaagctttgtagttgacctaacgagggaaactctgcagcaactccagagccatttagtgttta |
174 |
Q |
| |
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| T |
26552467 |
ttaaaggaccttttgtgagcagaatctgtc-ataatcaaagttttgttgttgacctaatgagggaaacactgcagtaacttcagagccatttagtacttt |
26552369 |
T |
|
| Q |
175 |
ctacttaaggtggttagttgatttgaacctaaaactctgatctgtgttta |
224 |
Q |
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| T |
26552368 |
ctactaaaactgccttgttgatttaaacctaaaactttaatctgtgttta |
26552319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 28735590 - 28735700
Alignment:
| Q |
112 |
aaagctttgtagttgacctaacgagggaaactctgcagcaactccag-agccatttagtgtttactacttaaggtggttagttgatttgaacctaaaact |
210 |
Q |
| |
|
|||||||||| |||| |||| ||| ||||||||| |||||| ||| || |||||||| ||||||||||||||||| |||||||||||||||| || | |
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| T |
28735590 |
aaagctttgttcttgatctaaggagagaaactctgtggcaacttcaggagtcatttagtatttactacttaaggtggctagttgatttgaacctgaagtt |
28735689 |
T |
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| Q |
211 |
ctgatctgtgt |
221 |
Q |
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|||||||||| |
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| T |
28735690 |
ttgatctgtgt |
28735700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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