View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_low_7 (Length: 596)
Name: NF1084_low_7
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 99 - 596
Target Start/End: Complemental strand, 45349697 - 45349205
Alignment:
| Q |
99 |
ttatctctctgtgttttcctgtaatgtaattgatttatctctgtttcgtaactttcagtagcaaaaaactcgtataccatataatcgtactat--cagat |
196 |
Q |
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| T |
45349697 |
ttatctctctgtgttttcctgtaatgtaattgatttatctctgtttcgtaactttcagtagcaaaaaactcgtataccatataatcgtactatatcagac |
45349598 |
T |
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| Q |
197 |
gagcatttcaataggtgcagtccaccaaaccaacaataatcataaaatgttcattgctcctctnnnnnnntataaaattgtcattggtttttaggttcat |
296 |
Q |
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| T |
45349597 |
gagcatttcaataggtgcagtccaccaaaccaacaataatcataaaatgttcattgctcctctaaaaaaatataaaattgtcattgctttttaggttcat |
45349498 |
T |
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| Q |
297 |
gtgagtattttcacattcgatttacaagtgggatattattaattacacattgcatacttacaaaacaagttacttaatactattgatattgcattttcaa |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45349497 |
gtgagtattttcacattcgatttacaagtgggatatta---attacacattgcaaacatacaaaacaagtcacttaatactattgatattgcattttcaa |
45349401 |
T |
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| Q |
397 |
atcaatatatagctcctactcatgagtgtggtttcgaagaacnnnnnnntgaaaacccaataaccttcttaaagcttctacaagtacaattatcaatgtt |
496 |
Q |
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||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45349400 |
atcaata----gctcctactcatgagtgtggtttcgaagaacaaaaaaatgaaaaccccataaccttcttaaagcttctacaagtacaattatcaatgtt |
45349305 |
T |
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| Q |
497 |
ataatcttcttcaatattgttcatctcatccaacactctgtagaacatatcaacattacatggaagcctaatagggccatcattttgaaacccatattca |
596 |
Q |
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| T |
45349304 |
ataatcttcttcaatattgttcatctcatccaacactctgtagaacatatcaacattacatggaagcctaatagggccatcattttgaaacccatattca |
45349205 |
T |
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