View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1084_low_71 (Length: 311)

Name: NF1084_low_71
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1084_low_71
NF1084_low_71
[»] scaffold0019 (1 HSPs)
scaffold0019 (71-238)||(17842-18009)
[»] chr7 (10 HSPs)
chr7 (71-238)||(841259-841426)
chr7 (71-238)||(848435-848602)
chr7 (71-238)||(1206439-1206606)
chr7 (71-238)||(8813510-8813677)
chr7 (71-219)||(23883831-23883979)
chr7 (71-238)||(16397500-16397667)
chr7 (71-210)||(30373997-30374136)
chr7 (71-220)||(16291342-16291491)
chr7 (71-220)||(802475-802624)
chr7 (71-151)||(9465617-9465697)
[»] chr5 (15 HSPs)
chr5 (71-238)||(26872146-26872313)
chr5 (71-238)||(29896192-29896359)
chr5 (71-238)||(1801192-1801359)
chr5 (71-238)||(7789888-7790055)
chr5 (72-222)||(22956009-22956159)
chr5 (71-238)||(7258978-7259145)
chr5 (71-238)||(12392469-12392636)
chr5 (71-238)||(17953047-17953214)
chr5 (71-238)||(31516255-31516422)
chr5 (71-238)||(5444255-5444422)
chr5 (71-220)||(34464648-34464797)
chr5 (71-238)||(36380021-36380188)
chr5 (71-238)||(37004693-37004860)
chr5 (71-228)||(11948454-11948611)
chr5 (71-234)||(15788772-15788935)
[»] chr1 (3 HSPs)
chr1 (71-238)||(2340513-2340680)
chr1 (71-238)||(6202006-6202173)
chr1 (69-238)||(5633170-5633339)
[»] scaffold0387 (1 HSPs)
scaffold0387 (71-238)||(6357-6524)
[»] scaffold0183 (1 HSPs)
scaffold0183 (71-238)||(31302-31469)
[»] chr6 (9 HSPs)
chr6 (71-238)||(2410953-2411120)
chr6 (71-238)||(20044915-20045082)
chr6 (71-238)||(24147730-24147897)
chr6 (71-238)||(620187-620354)
chr6 (71-238)||(20055157-20055324)
chr6 (71-219)||(2411485-2411634)
chr6 (71-238)||(16822045-16822212)
chr6 (71-238)||(9140448-9140615)
chr6 (71-238)||(27513019-27513186)
[»] chr3 (13 HSPs)
chr3 (71-238)||(15534156-15534323)
chr3 (71-238)||(6197473-6197640)
chr3 (71-238)||(8619513-8619680)
chr3 (71-238)||(15914485-15914652)
chr3 (71-219)||(8807408-8807556)
chr3 (71-238)||(15597069-15597236)
chr3 (80-219)||(21610838-21610977)
chr3 (74-238)||(46397533-46397697)
chr3 (71-238)||(5955002-5955169)
chr3 (71-238)||(37260813-37260980)
chr3 (71-220)||(20439101-20439250)
chr3 (71-220)||(41436266-41436415)
chr3 (71-234)||(46376225-46376388)
[»] chr4 (5 HSPs)
chr4 (71-237)||(14920423-14920589)
chr4 (71-238)||(15899789-15899956)
chr4 (74-219)||(16725095-16725240)
chr4 (71-219)||(22707042-22707190)
chr4 (71-238)||(18039333-18039500)
[»] scaffold0441 (1 HSPs)
scaffold0441 (71-238)||(10109-10276)
[»] chr8 (1 HSPs)
chr8 (71-238)||(21480222-21480389)
[»] scaffold0551 (2 HSPs)
scaffold0551 (71-238)||(4284-4451)
scaffold0551 (71-238)||(10398-10565)
[»] scaffold0435 (2 HSPs)
scaffold0435 (74-238)||(12953-13117)
scaffold0435 (74-238)||(13629-13793)
[»] scaffold0094 (1 HSPs)
scaffold0094 (71-238)||(39418-39585)
[»] scaffold0104 (2 HSPs)
scaffold0104 (163-238)||(36523-36598)
scaffold0104 (71-150)||(29392-29471)
[»] scaffold0002 (1 HSPs)
scaffold0002 (71-238)||(301852-302019)
[»] chr2 (2 HSPs)
chr2 (71-238)||(22945341-22945508)
chr2 (71-238)||(12379606-12379773)
[»] scaffold0029 (1 HSPs)
scaffold0029 (71-238)||(25109-25276)
[»] scaffold0595 (1 HSPs)
scaffold0595 (69-238)||(8923-9092)


Alignment Details
Target: scaffold0019 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 17842 - 18009
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  17842 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcacgtctcgttgcagttcatcatacttttctcgtaagtcattcactccat 17941  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17942 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 18009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 841426 - 841259
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||| |||||||| |||||||||    
T  841426 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcacatctcgttgcagttcatcatacttttctcgtaagtcactcactccat 841327  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  841326 cataggcatccatgttccctgaatggaagatgggttcttcattttgtggaatagtatgcatcacaggt 841259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 848602 - 848435
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||| |||||||| |||||||||    
T  848602 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcacatctcgttgcagttcatcatacttttctcgtaagtcactcactccat 848503  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  848502 cataggcatccatgttccctgaatggaagatgggttcttcattttgtggaatagtatgcatcacaggt 848435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 1206606 - 1206439
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||| |||||||| |||||||||    
T  1206606 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcacatctcgttgcagttcatcatacttttctcgtaagtcactcactccat 1206507  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1206506 cataggcatccatgttccctgaatggaagatgggttcttcattttgtggaatagtatgcatcacaggt 1206439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 8813677 - 8813510
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||| ||||| ||||||||||||||| ||||||||||||||||  |||| ||| | |||| ||||||||| |||||  |||||||||||| || ||    
T  8813677 cagagatcataagcggtctttccaaatttttctttcccacggagagccctcatttctcgatgcatttcatcatatttttcccgtaagtcattcattctat 8813578  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    ||| || |||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||    
T  8813577 catcgggctccatgttccctgaatggaagatgggttcttcattttgtggaatggtatgcatcataggt 8813510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 219
Target Start/End: Original strand, 23883831 - 23883979
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||| ||| ||||| ||||||||||||||| |||||||  |||||||  |||  ||| | |||| ||||||||| |||||  | ||||||||||||| ||    
T  23883831 cagaaatcataagcggtctttccaaatttttctttcccgaggagagccctcacttctcgatgcatttcatcatatttttcccgcaagtcattcactctat 23883930  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtgg 219  Q
    ||| || |||||||||||||||||||||||| |||||||||||||||||    
T  23883931 catcgggctccatgttccctgaatggaagatgggttcttcattttgtgg 23883979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 16397500 - 16397667
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||||||| |||||||| |||||||| |||||  |||||||  ||||||||||| |  | |||||||||||||||||| ||| |||  | ||| | |    
T  16397500 cagagatcgtacgcagtcttcccaaatttccctttttcacggaggactttcatgtctcggcgtagttcatcatacttttctcgtaggtcgcttacttcct 16397599  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    | || ||||| |  ||||||||||| ||||||||||||||| |||| || || ||||| |||||||||    
T  16397600 cgtaagcctctacattccctgaatgaaagataggttcttcagtttgcgggattgtatgtatcacaggt 16397667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 71 - 210
Target Start/End: Original strand, 30373997 - 30374136
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||||||| |||||||| |||||||| |||||  ||||||| |||||||||||| |  | |||||||||||||||||| ||| ||| || ||| | |    
T  30373997 cagagatcgtacgcagtcttcccaaatttccctttttcacggagggctttcatgtctcggcgtagttcatcatacttttctcgtaggtcgtttacttcct 30374096  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttc 210  Q
    | || ||||| |  ||||||||||| ||||||||||||||    
T  30374097 cgtaagcctctacattccctgaatgaaagataggttcttc 30374136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 220
Target Start/End: Original strand, 16291342 - 16291491
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||| || |||||||| ||||||||| || |||| || |||||||||||||| ||  | | ||  ||||||||||| |||||||| || | ||||  |     
T  16291342 cagaggtcataagcagtttttccaaatctttcttttccgcggagagctttcatctcacggtacatctcatcatacttctcttgtaaatcctccacttgac 16291441  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtgga 220  Q
    ||||||||| |||  ||| |||||||||||| ||||||||||||||||||    
T  16291442 cataggccttcatactccttgaatggaagatgggttcttcattttgtgga 16291491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 71 - 220
Target Start/End: Original strand, 802475 - 802624
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||| || |||||||| ||||||||| || |||| || |||||||||||||| ||  | | ||  || |||||||| |||||||| || | ||||  |     
T  802475 cagaggtcataagcagtttttccaaatctttcttttccgcggagagctttcatctcacggtacatctcgtcatacttctcttgtaaatcctccacttgac 802574  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtgga 220  Q
    ||||||||| |||  ||| |||||||||||| ||||||||||||||||||    
T  802575 cataggccttcatactccttgaatggaagatgggttcttcattttgtgga 802624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 9465697 - 9465617
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttct 151  Q
    ||||||||||| |||||||| |||||||| |||||  ||||||| |||||||||||| |  | ||||| ||||||||||||    
T  9465697 cagagatcgtacgcagtcttcccaaatttccctttttcacggagggctttcatgtctcggcgtagttcgtcatacttttct 9465617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 26872313 - 26872146
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||  ||| ||||||||||||||||||||||| |||||||| |||||||||    
T  26872313 cagagatcgtaagcagtctttccaaatttttccttcccacggagagctttcacatctcgttgcagttcatcatacttttctcgtaagtcactcactccat 26872214  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26872213 cataggcctccatgttccctgaatggaagatgggttcttcattttgtggaatagtatgcatcacaggt 26872146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 29896359 - 29896192
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||| | ||| |||||    
T  29896359 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcacgtctcgttgcagttcatcatacttttctcgtaagttactcattccat 29896260  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    | || | |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  29896259 cgtaagtctccatgttccctgaatggaagatggattcttcattttgtggaatagtatgcatcacaggt 29896192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 1801359 - 1801192
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||| ||||| ||||||||||||||| ||||||||||||||||  |||| ||| | |||| ||||||||| |||||  |||||||||||| || ||    
T  1801359 cagagatcataagcggtctttccaaatttttctttcccacggagagccctcatttctcgatgcatttcatcatatttttcccgtaagtcattcattctat 1801260  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    ||| || |||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||    
T  1801259 catcgggctccatgttccctgaatggaagatgggttcttcattttgtggaatggtatgcatcataggt 1801192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 7790055 - 7789888
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||| ||||| ||||||||||||||| ||||||||||||||||  |||| ||| | |||| ||||||||| |||||  |||||||||||| || ||    
T  7790055 cagagatcataagcggtctttccaaatttttctttcccacggagagccctcatttctcgatgcatttcatcatatttttcccgtaagtcattcattctat 7789956  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    ||| || |||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||    
T  7789955 catcgggctccatgttccctgaatggaagatgggttcttcattttgtggaatggtatgcatcataggt 7789888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 72 - 222
Target Start/End: Original strand, 22956009 - 22956159
Alignment:
Q  72 agagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccatc 171  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||   |||| ||| | |||| ||||||||| ||||| || ||||||||||||| |||    
T  22956009 agagatcgtaagcggtcttttcaaattttcctttcccacggagagacctcatttctcgatgcatttcatcatatttttcctgcaagtcattcactctatc 22956108  T
Q  172 ataggcctccatgttccctgaatggaagataggttcttcattttgtggaat 222  Q
    | ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22956109 acaggcctccatgttccctgaatggaagataggttcttcgttttgtggaat 22956159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 7258978 - 7259145
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||| ||||| ||||||||||||||| ||||||||||||||||  |||| ||| | |||| ||||||||| |||||  | |||||||||| || ||    
T  7258978 cagagatcataagcggtctttccaaatttttctttcccacggagagccctcatttctcgatgcatttcatcatatttttcccgcaagtcattcattctat 7259077  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    ||| || |||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||    
T  7259078 catcgggctccatgttccctgaatggaagatgggttcttcattttgtggaatggtatgcatcataggt 7259145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 12392469 - 12392636
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||| ||||| ||||||||||||||| |||||||  |||||||  |||  ||| | |||| ||||||||| |||||  | |||||||| |||| ||    
T  12392469 cagagatcataagcggtctttccaaatttttctttcccgaggagagccctcacttctcgatgcatttcatcatatttttcccgcaagtcatttactctat 12392568  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    | | || |||||||||||||||||||||||| |||||||||||||||||||  |||||||||| ||||    
T  12392569 cgtcgggctccatgttccctgaatggaagatgggttcttcattttgtggaacggtatgcatcataggt 12392636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 17953214 - 17953047
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||||||| |||||||| |||||||| |||||  ||||||| |||||||||||| |  | |||||||||||||||||||||| |||  | ||| | |    
T  17953214 cagagatcgtacgcagtcttcccaaatttccctttatcacggagggctttcatgtctcggcgtagttcatcatacttttcttgtaggtcgcttacttcct 17953115  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    | || ||||| |  ||||||||||| ||||||||||||||| |||| ||||| ||||| |||||||||    
T  17953114 cgtaagcctctacattccctgaatgaaagataggttcttcagtttgcggaattgtatgtatcacaggt 17953047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 31516422 - 31516255
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||||||| |||||||| |||||||| |||||  ||||||| |||||||||||| |  | |||||||||||||||||| ||| |||  | ||| | |    
T  31516422 cagagatcgtacgcagtcttcccaaatttccctttttcacggagggctttcatgtctcggcgtagttcatcatacttttctcgtaggtcgcttacttcct 31516323  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    | || ||||| |  ||||||||||| ||||||||||||||| |||| || || ||||| |||||||||    
T  31516322 cgtaagcctctacattccctgaatgaaagataggttcttcagtttgcgggattgtatgtatcacaggt 31516255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 5444255 - 5444422
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||| ||||| |||||||| |||||||| |||||  || |||||||||||| |||| |  | |||||||||||||||||| ||| |||  | ||||| |    
T  5444255 cagaggtcgtacgcagtcttcccaaatttccctttttcatggagagctttcacgtctcggcgtagttcatcatacttttctcgtaggtcgcttactccct 5444354  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    | || |||||    ||||||||||| |||||||| |||||| |||| ||||| ||||| |||||||||    
T  5444355 cgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgtatcacaggt 5444422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 220
Target Start/End: Complemental strand, 34464797 - 34464648
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||| || |||||||| ||||||||| || |||| || |||||||||||||| ||  | | ||  ||||||||||| |||||||| || | ||||  |     
T  34464797 cagaggtcataagcagtttttccaaatctttcttttccgcggagagctttcatctcacggtacatctcatcatacttctcttgtaaatcctccacttgac 34464698  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtgga 220  Q
    ||||||||| |||  ||| |||||||||||| ||||||||||||||||||    
T  34464697 cataggccttcatactccttgaatggaagatgggttcttcattttgtgga 34464648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 36380021 - 36380188
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||||||| |||||||| || ||||| |||||  || ||||||||||||||||| |  | ||||||||||||||| || ||| |||  | ||| | |    
T  36380021 cagagatcgtacgcagtcttcccgaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatactttgctcgtaggtcgcttacttctt 36380120  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    | || |||||    ||||||||||| |||||||| |||||| |||| ||||| ||||| |||||||||    
T  36380121 cgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgtatcacaggt 36380188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 37004693 - 37004860
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||||||| |||||||| || ||||| |||||  || ||||||||||||||||| |  | ||||||||||||||| || ||| |||  | ||| | |    
T  37004693 cagagatcgtacgcagtcttcccgaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatactttgctcgtaggtcgcttacttctt 37004792  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    | || |||||    ||||||||||| |||||||| |||||| |||| ||||| ||||| |||||||||    
T  37004793 cgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgtatcacaggt 37004860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 228
Target Start/End: Original strand, 11948454 - 11948611
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||||||| |||||||| || ||||| |||||  || ||||||||||||||||| |  | |||||||||||||| ||| ||| |||  | ||| | |    
T  11948454 cagagatcgtacgcagtcttcccgaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttctctcgtaggtcgcttacttcct 11948553  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatg 228  Q
    | || |||||    ||||||||||| |||||||| |||||| |||| ||||| |||||    
T  11948554 cgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatg 11948611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 234
Target Start/End: Original strand, 15788772 - 15788935
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||||||| |||||||| || ||||| |||||  || ||||||||||||||||| |  | |||||||||||||| ||| ||| |||| | ||  |      
T  15788772 cagagatcgtacgcagtcttcccgaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttctctcgtaggtcacttacctccc 15788871  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcac 234  Q
    | || |||||    ||||||||||| |||||||| ||||||  ||| ||||| |||||||||||    
T  15788872 cgtaagcctctgcattccctgaatgaaagataggctcttcagcttgcggaattgtatgcatcac 15788935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 2340513 - 2340680
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||| | ||| | |||    
T  2340513 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcacgtctcgttgcagttcatcatacttttctcgtaagttactcatttcat 2340612  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    |||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2340613 cataagtctccatgttccctgaatggaagatgggttcttcattttgtggaatagtatgcatcacaggt 2340680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 6202006 - 6202173
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||| ||||| || |||||||||||||||||||||||||||||  |||| ||| | |||| ||||||||| ||||| || |||||| |||||| ||    
T  6202006 cagagatcataagcggtttttccaaattttcctttcccacggagagccctcatttctcgatgcatttcatcatatttttcctgcaagtcaatcactctat 6202105  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
     || ||  |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  6202106 gatcgggttccatgttccctgaatggaagataggttcttcattttgtggaatggtatgcattacaggt 6202173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 238
Target Start/End: Original strand, 5633170 - 5633339
Alignment:
Q  69 agcagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactcc 168  Q
    ||||||||||||| |||||||| || ||||| |||||  || ||||||||||||||||| |  | |||||||||||||| ||| ||| |||  | ||  |    
T  5633170 agcagagatcgtacgcagtcttcccgaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttctctcgtaggtcgcttacctc 5633269  T
Q  169 atcataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
     || || |||||    ||||||||||| |||||||  |||||| |||| ||||| |||||||||||||||    
T  5633270 ctcgtaagcctctgcattccctgaatgaaagatagactcttcagtttgcggaattgtatgcatcacaggt 5633339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0387 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: scaffold0387
Description:

Target: scaffold0387; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 6357 - 6524
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||||||||| ||||||||||||||| ||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  6357 cagagatcgtaagcggtctttccaaatttttctttcccacagagagttttcatgtctcgttgcagttcatcatacttttcttgtaagtcattcactctat 6456  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    ||||||||||||| |||||| |||||| ||| ||||| ||||||||||||||||||||||||||||||    
T  6457 cataggcctccatattccctaaatggatgatgggttcgtcattttgtggaatagtatgcatcacaggt 6524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 31469 - 31302
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||  ||| ||||||||||||||||||||||| |||||||| ||| || ||    
T  31469 cagagatcgtaagcagtctttccaaatttttctttcccacggagagctttcacatctcgttgcagttcatcatacttttctcgtaagtcactcattctat 31370  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
     |||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31369 tataggcctccatgtcctctgaatggaagataggctcttcattttgtggaatagtatgcatcacaggt 31302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 2410953 - 2411120
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||| |||| ||| | |||||||||||||||||||| |||||||||||||||| ||    
T  2410953 cagagatcgtaagcggtctttccaaatttttctttcccacggagagctctcatatctcgctgcagttcatcatacttttcctgtaagtcattcactctat 2411052  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    || || ||||||| ||||||||||||||||| ||||||||| ||||||||| ||| || |||| ||||    
T  2411053 cacagacctccatattccctgaatggaagatgggttcttcaatttgtggaacagtgtggatcataggt 2411120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 20044915 - 20045082
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||| ||||| ||||||||||||||| ||||||||||||||||  |||| ||| | |||| ||||||||| |||||  |||||||||||| || ||    
T  20044915 cagagatcataagcggtctttccaaatttttctttcccacggagagccctcatttctcgatgcatttcatcatatttttcccgtaagtcattcattctat 20045014  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    ||| || |||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||    
T  20045015 catcgggctccatgttccctgaatggaagatgggttcttcattttgtggaatggtatgcatcataggt 20045082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 24147730 - 24147897
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||| ||||| ||||||||||||||| ||||||||||||||||  |||| ||| | |||| ||||||||| |||||  |||||||||||| || ||    
T  24147730 cagagatcataagcggtctttccaaatttttctttcccacggagagccctcatttctcgatgcatttcatcatatttttcccgtaagtcattcattctat 24147829  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    ||| || |||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||    
T  24147830 catcggactccatgttccctgaatggaagatgggttcttcattttgtggaatggtatgcatcataggt 24147897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 620187 - 620354
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||| ||||| ||||||||||||||| ||||||||||||||||  |||| ||| | |||| ||||||||| |||||  | |||||||||| || ||    
T  620187 cagagatcataagcggtctttccaaatttttctttcccacggagagccctcatttctcgatgcatttcatcatatttttcccgcaagtcattcattctat 620286  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    ||| || |||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||    
T  620287 catcgggctccatgttccctgaatggaagatgggttcttcattttgtggaatggtatgcatcataggt 620354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 20055157 - 20055324
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||||||||| |||||||||||||||||| || | ||||||||  |||| ||| | |||| ||||||||| ||||| || |||||| |||||| ||    
T  20055157 cagagatcgtaagcggtctttccaaattttcctctctcgcggagagccctcatttctcgatgcatttcatcatatttttcctgcaagtcaatcactctat 20055256  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    ||| ||  |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||    
T  20055257 catcgggttccatgttccctgaatggaagataggttcttcattttgtggaatggtatgtattacaggt 20055324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 71 - 219
Target Start/End: Complemental strand, 2411634 - 2411485
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcc-tttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactcca 169  Q
    |||||||||||||| |||||||||||||||   ||||||||| |||||| |||| ||| | |||||||||||||||||||| |||||||||||||||| |    
T  2411634 cagagatcgtaagcggtctttccaaattttttatttcccacgaagagctctcatatctcgctgcagttcatcatacttttcctgtaagtcattcactcta 2411535  T
Q  170 tcataggcctccatgttccctgaatggaagataggttcttcattttgtgg 219  Q
    ||| || ||||||| |||||||||||||||||  ||||||||||||||||    
T  2411534 tcacagacctccatattccctgaatggaagatgagttcttcattttgtgg 2411485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 16822045 - 16822212
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||| |  | |||||||||||||||||| |||  ||  | ||||| |    
T  16822045 cagagatcataagcggtctttccaaatttttctttcccacggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgcttactccct 16822144  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    | || |||||    |||| |||||| |||||||| |||||| |||| ||||| |||||||||||||||    
T  16822145 cgtaagcctctgcattccttgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 16822212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 9140448 - 9140615
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||||||| |||||||| |||||||| |||||  ||||||| |||||||||||| |  | |||||||||||||||||| ||| |||  | ||| | |    
T  9140448 cagagatcgtacgcagtcttcccaaatttccctttttcacggagggctttcatgtctcggcgtagttcatcatacttttctcgtaggtcgcttacttcct 9140547  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    | || ||||| |  ||||||||||| ||||||||||||||| |||| ||||| ||||| |||||||||    
T  9140548 cgtaagcctctacattccctgaatgaaagataggttcttcagtttgcggaattgtatgtatcacaggt 9140615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 27513186 - 27513019
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||||||| |||||||| |||||||| |||||  || ||||||||||||||||| |  | |||||||||||||||||| |||  ||  | ||||| |    
T  27513186 cagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgcttactccct 27513087  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    | || |||||    |||| |||||| |||||||| |||||| |||| ||||| |||||||||| ||||    
T  27513086 cgtaagcctctgcattccttgaatgaaagataggctcttcagtttgcggaattgtatgcatcataggt 27513019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 15534156 - 15534323
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||| ||||| |||||||||||||||| |||||||||||||||  |||| ||| | |||| ||||||||| ||||| || |||||||||| || ||    
T  15534156 cagagatcataagcggtctttccaaattttcttttcccacggagagccctcatttctcgatgcatttcatcatatttttcctgcaagtcattcattctat 15534255  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    ||| || |||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||    
T  15534256 catcgggctccatgttccctgaatggaagatgggttcttcattttgtggaatggtatgcatcataggt 15534323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 6197640 - 6197473
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||| ||||  ||||||||||||||| ||||||||||||||||  |||| ||| | |||| ||||||||| |||||  |||||||||||| || ||    
T  6197640 cagagatcataagtggtctttccaaatttttctttcccacggagagccctcatttctcgatgcatttcatcatatttttcccgtaagtcattcattctat 6197541  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    ||| || |||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||    
T  6197540 cattgggctccatgttccctgaatggaagatgggttcttcattttgtggaatggtatgcatcataggt 6197473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 8619680 - 8619513
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||| ||||| ||||||||||||||| ||||||||||||||||  |||| ||| | |||| ||||||||| |||||  | |||||||||| || ||    
T  8619680 cagagatcataagcggtctttccaaatttttctttcccacggagagccctcatttctcgatgcatttcatcatatttttcccgcaagtcattcattctat 8619581  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    ||| || |||||||||||||||||||||||| ||||||||||||| |||||| |||||| ||| ||||    
T  8619580 catcgggctccatgttccctgaatggaagatgggttcttcattttatggaatggtatgcgtcataggt 8619513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 15914652 - 15914485
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||||||| || ||||||||||| ||  |||||| ||||||||||||||| || || | ||     |||||||| ||||||||||||||||||  ||    
T  15914652 cagagatcgtaggcggtctttccaaacttctctttccgacggagagctttcatttcctggttcatcatctcatacttctcttgtaagtcattcactttat 15914553  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    | | ||||||||| |||||||||||||| || ||||||||| ||||||||||||||||||||||||||    
T  15914552 cgttggcctccatattccctgaatggaaaattggttcttcactttgtggaatagtatgcatcacaggt 15914485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 71 - 219
Target Start/End: Complemental strand, 8807556 - 8807408
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||| ||||| ||||||||||||||| |||||||  |||||||  |||  ||| | |||| ||||||||| |||||  | ||||||||||||| ||    
T  8807556 cagagatcataagcggtctttccaaatttttctttcccgaggagagccctcacttctcgatgcatttcatcatatttttcccgcaagtcattcactctat 8807457  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtgg 219  Q
    ||| || |||||||||||||||||||||||| |||||||||||||||||    
T  8807456 catcgggctccatgttccctgaatggaagatgggttcttcattttgtgg 8807408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 15597069 - 15597236
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||||||| || ||||| ||||| ||  |||||||||||||||||||||| || || | ||     |||||||| |||||||||||||||||   ||    
T  15597069 cagagatcgtaggcggtcttcccaaacttctctttcccacggagagctttcatttcctggttcatcatctcatacttctcttgtaagtcattcaccttat 15597168  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    | | ||||||||| |||||||||||||| || ||||||||| |||||||||| |||||||||||||||    
T  15597169 cgttggcctccatattccctgaatggaaaattggttcttcactttgtggaattgtatgcatcacaggt 15597236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 80 - 219
Target Start/End: Complemental strand, 21610977 - 21610838
Alignment:
Q  80 taagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccatcataggcct 179  Q
    ||||| ||||||||||||||| |||||||  |||||||  |||  ||| | |||| ||||||||| |||||  | ||||||||||||| ||||| || ||    
T  21610977 taagcggtctttccaaatttttctttcccgaggagagccctcacttctcgatgcatttcatcatatttttcccgcaagtcattcactctatcatcgggct 21610878  T
Q  180 ccatgttccctgaatggaagataggttcttcattttgtgg 219  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  21610877 ccatgttccctgaatggaagatgggttcttcattttgtgg 21610838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 74 - 238
Target Start/End: Original strand, 46397533 - 46397697
Alignment:
Q  74 agatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccatcat 173  Q
    ||||||||||| |||||||||||||||||| || | |||||||||||||||||| |  | |||||||||||||||||| |||  ||  | ||||| || |    
T  46397533 agatcgtaagcggtctttccaaattttcctctctcgcggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgcttactccctcgt 46397632  T
Q  174 aggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    | |||||    |||| |||||| |||||||| |||||| |||| ||||| |||||||||||||||    
T  46397633 aagcctctgcattccttgaatgaaagataggctcttcagtttgcggaattgtatgcatcacaggt 46397697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 5955002 - 5955169
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||||||| |||||||| |||||||| |||||  ||||||| |||||||||||| |  | |||||||||||||||||| ||| |||  | ||| | |    
T  5955002 cagagatcgtacgcagtcttcccaaatttccctttttcacggagggctttcatgtctcggcgtagttcatcatacttttctcgtaggtcgcttacttcct 5955101  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    | || ||||| |  ||||||||||| ||||||||||||||| |||| || || ||||| |||||||||    
T  5955102 cgtaagcctctacattccctgaatgaaagataggttcttcagtttgcgggattgtatgtatcacaggt 5955169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 37260813 - 37260980
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||||||| |||||||| |||||||| |||||  ||||||| |||||||||||| |  | |||||||||||||||||| ||| |||  | ||| | |    
T  37260813 cagagatcgtacgcagtcttcccaaatttccctttttcacggagggctttcatgtctcggcgtagttcatcatacttttctcgtaggtcgcttacttcct 37260912  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    | || ||||| |  |||| |||||| ||||||||||||||| |||| ||||| ||||| |||||||||    
T  37260913 cgtaagcctctacattccttgaatgaaagataggttcttcagtttgcggaattgtatgtatcacaggt 37260980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 220
Target Start/End: Complemental strand, 20439250 - 20439101
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||| || |||||||| ||||||||| || |||| || |||||||||||||| ||  | | ||  ||||||||||| |||||||| || | ||||  |     
T  20439250 cagaggtcataagcagtttttccaaatctttcttttccgcggagagctttcatctcacggtacatctcatcatacttctcttgtaaatcctccacttgac 20439151  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtgga 220  Q
    ||||||||| |||  ||| |||||||||||| ||||||||||||||||||    
T  20439150 cataggccttcatactccttgaatggaagatgggttcttcattttgtgga 20439101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 220
Target Start/End: Complemental strand, 41436415 - 41436266
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||| || |||||||| ||||||||| || |||| || |||||||||||||| ||  | | ||  ||||||||||| |||||||| || | ||||  |     
T  41436415 cagaggtcataagcagtttttccaaatctttcttttccgcggagagctttcatctcacggtacatctcatcatacttctcttgtaaatcctccacttgac 41436316  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtgga 220  Q
    |||||| || |||  ||| ||| |||||||| ||||||||||||||||||    
T  41436315 cataggtcttcatactccttgattggaagatgggttcttcattttgtgga 41436266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 234
Target Start/End: Complemental strand, 46376388 - 46376225
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||||||| |||||||| || ||||| |||||  || ||||||||||||||||| |  | |||||||||||||| ||| ||| |||| | ||  |      
T  46376388 cagagatcgtacgcagtcttcccgaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttctctcgtaggtcacttacctccc 46376289  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcac 234  Q
    | || |||||    ||||||||||| |||||||| ||||||  ||| ||||| |||||||||||    
T  46376288 cgtaagcctctgcattccctgaatgaaagataggctcttcagcttgcggaattgtatgcatcac 46376225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 71 - 237
Target Start/End: Complemental strand, 14920589 - 14920423
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||| ||||| ||||||||||||||| ||||||||||||||||  |||| ||| | |||| ||||||||| ||||| || |||||| |||||| ||    
T  14920589 cagagatcataagcggtctttccaaatttttctttcccacggagagccctcatttctcgatgcatttcatcatatttttcctgcaagtcaatcactctat 14920490  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacagg 237  Q
    ||| ||  |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  14920489 catcgggttccatgttccctgaatggaagataggttcttcattttgtggaatggtatgcattacagg 14920423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 15899789 - 15899956
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||  |||| ||| | |||| ||| ||||| ||||| || ||||||| ||||| ||    
T  15899789 cagagatcgtaagcggtctttccaaattatcctttcccacggagagccctcatttctcgatgcatttcgtcatatttttcctgcaagtcatccactctat 15899888  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    ||| |||||||| ||||||||| |||||||| |||||||||||||||||||| |||||||||| ||||    
T  15899889 catcggcctccacgttccctgagtggaagatgggttcttcattttgtggaatggtatgcatcataggt 15899956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 219
Target Start/End: Original strand, 16725095 - 16725240
Alignment:
Q  74 agatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccatcat 173  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||  |||| ||| | |||| ||||||||| |||||  | |||||||||| |  |||||    
T  16725095 agatcataagcggtctttccaaatttttctttcccacggagagccctcatttctcgatgcatttcatcatatttttcccgcaagtcattcattttatcat 16725194  T
Q  174 aggcctccatgttccctgaatggaagataggttcttcattttgtgg 219  Q
     || |||||||||||||||||||||||| |||||||||||||||||    
T  16725195 cgggctccatgttccctgaatggaagatgggttcttcattttgtgg 16725240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 219
Target Start/End: Complemental strand, 22707190 - 22707042
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||| ||||| ||||||||||||||| |||||||  |||||||  |||  ||| | |||| ||||||||| |||||  | ||||||||||||| ||    
T  22707190 cagagatcataagcggtctttccaaatttttctttcccgaggagagccctcacttctcgatgcatttcatcatatttttcccgcaagtcattcactctat 22707091  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtgg 219  Q
    ||| ||  ||||||||||||||||||||||| |||||||||||||||||    
T  22707090 catcgggttccatgttccctgaatggaagatgggttcttcattttgtgg 22707042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 18039500 - 18039333
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||||||| |||||||| |||||||| |||||  || ||||||||||||||||| |  | |||||||||||||||||| |||  ||  | ||||| |    
T  18039500 cagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtagatcgcttactccct 18039401  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    | || |||||    |||| |||||| |||||||| |||||| |||| ||||| |||||||||| ||||    
T  18039400 cgtaagcctctgcattccttgaatgaaagataggctcttcagtttgcggaattgtatgcatcataggt 18039333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0441 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0441
Description:

Target: scaffold0441; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 10276 - 10109
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||| ||||| ||||||||||||||| ||||||||||||||||  |||| ||| | |||| ||||||||| |||||  | ||||||||||||| ||    
T  10276 cagagatcataagcggtctttccaaatttttctttcccacggagagccctcatttctcgatgcatttcatcatatttttcccgcaagtcattcactctat 10177  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    ||| || ||||||||||||||||||||| || |||||||||||||||||||| |||||||||| ||||    
T  10176 catcgggctccatgttccctgaatggaatatgggttcttcattttgtggaatggtatgcatcataggt 10109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 21480222 - 21480389
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    |||||||| ||||  ||||||||||||||| ||||||||||||||||  |||| ||| | |||| ||||||||| |||||  |||||||||||| || ||    
T  21480222 cagagatcataagtggtctttccaaatttttctttcccacggagagccctcatttctcgatgcatttcatcatatttttcccgtaagtcattcattctat 21480321  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    ||| || |||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||    
T  21480322 catcgggctccatgttccctgaatggaagatgggttcttcattttgtggaatggtatgcatcataggt 21480389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: scaffold0551
Description:

Target: scaffold0551; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 4284 - 4451
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||| |||||| || ||||||||||||||| |||||||||||||  |||| ||| | |||| ||||||||| ||||| |  ||||||| ||||| ||    
T  4284 cagagattgtaagcggtttttccaaattttcctctcccacggagagccctcatttctcgatgcatttcatcatatttttcctacaagtcatccactctat 4383  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    ||| ||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||| ||||||    
T  4384 catcggcctccatgttccctgaatggaagatgggttcttcattttatggaatggtatgcattacaggt 4451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 10398 - 10565
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||| |||||| || ||||||||||||||| |||||||||||||  |||| ||| | |||| ||||||||| ||||| |  ||||||| ||||| ||    
T  10398 cagagattgtaagcggtttttccaaattttcctctcccacggagagccctcatttctcgatgcatttcatcatatttttcctacaagtcatccactctat 10497  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    ||| ||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||| ||||||    
T  10498 catcggcctccatgttccctgaatggaagatgggttcttcattttatggaatggtatgcattacaggt 10565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 74 - 238
Target Start/End: Original strand, 12953 - 13117
Alignment:
Q  74 agatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccatcat 173  Q
    ||||||||||| |||||||||||||||||| || ||| ||||||  |||  ||| | |||| ||| ||||| ||||| || ||||||||||||  ||||     
T  12953 agatcgtaagcggtctttccaaattttcctctctcacagagagccctcacttctcgatgcatttcgtcatatttttcctgcaagtcattcactatatcac 13052  T
Q  174 aggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    |||| |||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||    
T  13053 aggcttccatgttccctgaatggaaaacgagttcttcattttgtggaatagtatgcatcacaggt 13117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 74 - 238
Target Start/End: Original strand, 13629 - 13793
Alignment:
Q  74 agatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccatcat 173  Q
    ||||||||||| |||||||||||||||||| || ||| ||||||  |||  ||| | |||| ||| ||||| ||||| || ||||||||||||  ||||     
T  13629 agatcgtaagcggtctttccaaattttcctctctcacagagagccctcacttctcgatgcatttcgtcatatttttcctgcaagtcattcactatatcac 13728  T
Q  174 aggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    |||| |||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||    
T  13729 aggcttccatgttccctgaatggaaaacgagttcttcattttgtggaatagtatgcatcacaggt 13793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 39418 - 39585
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||||||| || ||||| ||||| ||  |||||||||||||||||||||| || || | ||     |||||||| |||||||||||||||||   ||    
T  39418 cagagatcgtaggcggtcttcccaaacttctctttcccacggagagctttcatttcctggttcatcatctcatacttctcttgtaagtcattcaccttat 39517  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    | | ||||||||| |||||||||||||| || ||||||||| ||||||||||||||||||||||||||    
T  39518 cgttggcctccatattccctgaatggaaaattggttcttcactttgtggaatagtatgcatcacaggt 39585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 36523 - 36598
Alignment:
Q  163 cactccatcataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    ||||| ||||| |||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||    
T  36523 cactctatcatcggcctccatgttccctgagtggaagatgggttcttcattttgtggaatggtatgcatcacaggt 36598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 71 - 150
Target Start/End: Original strand, 29392 - 29471
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttc 150  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||  |||| ||| | |||| ||| ||||| |||||    
T  29392 cagagatcgtaagcggtctttccaaattttcctttcccacggagagccctcatttctcgatgcatttcgtcatatttttc 29471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 302019 - 301852
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||||||| |||||||| |||||||| |||||  ||||||| |||||||||||| |  | |||||||||||||||||| ||| |||  | ||| | |    
T  302019 cagagatcgtacgcagtcttcccaaatttccctttttcacggagggctttcatgtctcggcgtagttcatcatacttttctcgtaggtcgcttacttcct 301920  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    | || ||||| |  ||||||||||| ||||||||||||||| |||| || || ||||| |||||||||    
T  301919 cgtaagcctctacattccctgaatgaaagataggttcttcagtttgcgggattgtatgtatcacaggt 301852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 22945508 - 22945341
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||||||| |||||||| |||||||| |||||  || ||||||||||||||||| |  | |||||||||||||||||| ||| |||  | ||||| |    
T  22945508 cagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtaggtcgcttactccct 22945409  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    | || |||||    ||||||||||| |||||||| |||||| |||| ||||| ||||| |||||||||    
T  22945408 cgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgtatcacaggt 22945341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 12379773 - 12379606
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||||||| |||||||| |||||||| |||||  ||||||| |||||||||||| |  | ||||| |||||||||||| ||| |||  | ||| | |    
T  12379773 cagagatcgtacgcagtcttcccaaatttccctttttcacggagggctttcatgtctcggcgtagttcgtcatacttttctcgtaggtcgcttacttcct 12379674  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    | || |||||    ||||||||||| |||||||| |||||| |||| || || ||||| |||||||||    
T  12379673 cgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcgggattgtatgtatcacaggt 12379606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 25276 - 25109
Alignment:
Q  71 cagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactccat 170  Q
    ||||||||||| |||||||| |||||||| |||||  || ||||||||||||||||| |  | |||||||||||||||||| ||| |||  | ||| | |    
T  25276 cagagatcgtacgcagtcttcccaaatttccctttttcatggagagctttcatgtctcggcgtagttcatcatacttttctcgtaggtcgcttacttcct 25177  T
Q  171 cataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
    | || |||||    ||||||||||| |||||||| |||||| |||| ||||| ||||| |||||||||    
T  25176 cgtaagcctctgcattccctgaatgaaagataggctcttcagtttgcggaattgtatgtatcacaggt 25109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 238
Target Start/End: Complemental strand, 9092 - 8923
Alignment:
Q  69 agcagagatcgtaagcagtctttccaaattttcctttcccacggagagctttcatgtcttgttgcagttcatcatacttttcttgtaagtcattcactcc 168  Q
    ||||||||||||| |||||||| || ||||| |||||  || |||| |||||||||||| |  | |||||||||||||| ||| ||| |||  | ||  |    
T  9092 agcagagatcgtacgcagtcttcccgaatttccctttttcatggagggctttcatgtctcggcgtagttcatcatacttctctcgtaggtcgcttacctc 8993  T
Q  169 atcataggcctccatgttccctgaatggaagataggttcttcattttgtggaatagtatgcatcacaggt 238  Q
      | || |||||    ||||||||||| |||||||| ||||||  ||| ||||| |||||||||||||||    
T  8992 cccgtaagcctctgcattccctgaatgaaagataggctcttcagcttgcggaattgtatgcatcacaggt 8923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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