View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1084_low_76 (Length: 292)
Name: NF1084_low_76
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_76 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 71 - 282
Target Start/End: Complemental strand, 38767881 - 38767660
Alignment:
| Q |
71 |
cttaaggctgcacctccagatattattagtctaacacgtccccctagccttgctttgacctaatggtgtgttaaggagaaggttcagaaattggtcccta |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38767881 |
cttaaggctgcacctccagatattattagtctaacacgtccacctagccttgctttgacctaatggtgtgttaaggagaaggttcagaaattggtcccta |
38767782 |
T |
|
| Q |
171 |
acattactagctagtacatgcaagaga--------------atatatatatgtatagacacacacaacctttctgaaggctagaaggtctgcaagacgtg |
256 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38767781 |
acatta----ctagtacatgcaagagaatatatatatatatatatatatatatatagacacacacaacctttctgaaggctagaaggtctgcaagacgtg |
38767686 |
T |
|
| Q |
257 |
atgcttctctctgtttgtatcctttg |
282 |
Q |
| |
|
|||||||||||||| ||||||||||| |
|
|
| T |
38767685 |
atgcttctctctgtgtgtatcctttg |
38767660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University