View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_low_84 (Length: 267)
Name: NF1084_low_84
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_84 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 43224409 - 43224164
Alignment:
| Q |
22 |
catcatcatgttcatttcctttttatctgctacaccaatcttctcagattcttcctccagttcaaacgcaatccccaatttcctggaattagccaaggaa |
121 |
Q |
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| T |
43224409 |
catcatcatgttcatttcctttttatctgctacaccaatcttctcagattcttcctccagttcaaacgcaatccccaatttcctggaattagccaaggaa |
43224310 |
T |
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| Q |
122 |
cctcaagtttttgattggatggttgatataaggaggaagattcatgagaatcctgaacttggttatgaggaatttgagaccagtaagcttataagaacag |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43224309 |
cctcaagtttttgattggatggttgatataaggaggaagattcatgagaatcctgaacttggttatgaggaatttgagaccagtaagcttataagaacag |
43224210 |
T |
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| Q |
222 |
aattggatgaattaagtgttcaatataaacatccagttgcagtgac |
267 |
Q |
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| T |
43224209 |
aattggatgaattaggtgttcaatataaacatccagttgcagtgac |
43224164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 41654489 - 41654734
Alignment:
| Q |
22 |
catcatcatgttcatttcctttttatctgctacaccaatcttctcagattcttcctccagttcaaacgcaatccccaatttcctggaattagccaaggaa |
121 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
41654489 |
catcgtcattttcatttcctttttatctgctacaccaatcttctcagactcttccaccagttcaaatgcaatccccaacttcctggaattagccaaggaa |
41654588 |
T |
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| Q |
122 |
cctcaagtttttgattggatggttgatataaggaggaagattcatgagaatcctgaacttggttatgaggaatttgagaccagtaagcttataagaacag |
221 |
Q |
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| T |
41654589 |
cctcaagtttttgattggatggttgatataaggaggaagattcatgagaatcctgaacttggttatgaagaatttgagaccagtaagcttataagaacaa |
41654688 |
T |
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| Q |
222 |
aattggatgaattaagtgttcaatataaacatccagttgcagtgac |
267 |
Q |
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| T |
41654689 |
aattggatgaattgggtgttacatataaacatccagttgcagtgac |
41654734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 104 - 267
Target Start/End: Complemental strand, 43213592 - 43213429
Alignment:
| Q |
104 |
ctggaattagccaaggaacctcaagtttttgattggatggttgatataaggaggaagattcatgagaatcctgaacttggttatgaggaatttgagacca |
203 |
Q |
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| T |
43213592 |
ctggaattagccaaagagcctcaagtttttgattggatggttgatataaggaggaagattcatgagaatcctgaagttggttatgaagaatttgaaacca |
43213493 |
T |
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| Q |
204 |
gtaagcttataagaacagaattggatgaattaagtgttcaatataaacatccagttgcagtgac |
267 |
Q |
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||||||||||||||||| |||| ||||||||| |||| | ||||||||||||||||| |||||| |
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| T |
43213492 |
gtaagcttataagaacaaaattagatgaattaggtgtcccatataaacatccagttgtagtgac |
43213429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 41649937 - 41650194
Alignment:
| Q |
22 |
catcatcatgttcatttcctttttatctgctacaccaatcttctcagattcttcctccag---ttcaaacg---------caatccccaatttcctggaa |
109 |
Q |
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||||||||| ||||||| ||||| |||||| |||||||||||||||||||| ||||||| |||||| | ||||||| || || || | |
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| T |
41649937 |
catcatcattttcattttcttttcatctgcaacaccaatcttctcagattcctcctccaccacttcaaatgaccacttatcaatcccaaactttctaaat |
41650036 |
T |
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| Q |
110 |
ttagccaaggaacctcaagtttttgattggatggttgatataaggaggaagattcatgagaatcctgaacttggttatgaggaatttgagaccagtaagc |
209 |
Q |
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||| |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||| | |||||| | || ||||||| |
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| T |
41650037 |
ttatccaaggaacctcaagtttttgatttcatggttgatataaggagaaaaattcatgagaatcctgaactgagttatcaagaatttaaaactagtaagc |
41650136 |
T |
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| Q |
210 |
ttataagaacagaattggatgaattaagtgttcaatataaacatccagttgcagtgac |
267 |
Q |
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||||| ||||| |||||||||||||| |||| | |||||||||||||||||||||||| |
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| T |
41650137 |
ttatacgaacaaaattggatgaattaggtgtcccatataaacatccagttgcagtgac |
41650194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 264
Target Start/End: Complemental strand, 43206709 - 43206458
Alignment:
| Q |
22 |
catcatcatgttcatttcctttttatctgctacaccaatcttctcagattcttcctccagttcaaacg---------caatccccaatttcctggaatta |
112 |
Q |
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||||||||| ||||||| |||||| ||||| |||||| |||||||||| | || |||| |||||| | ||||||| || || || || ||| |
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| T |
43206709 |
catcatcattttcattttctttttctctgcaacaccagtcttctcagacttctcttccacttcaaatgaccacttatcaatcccaaactttctagattta |
43206610 |
T |
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| Q |
113 |
gccaaggaacctcaagtttttgattggatggttgatataaggaggaagattcatgagaatcctgaacttggttatgaggaatttgagaccagtaagctta |
212 |
Q |
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|| || || ||| |||||||||| ||||||||| ||||||||| || |||||||||||||||||||| ||||| | ||||||||||| |||||||||| |
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| T |
43206609 |
gctaaagagcctaaagtttttgactggatggtttctataaggagaaaaattcatgagaatcctgaactgagttatcaagaatttgagactagtaagctta |
43206510 |
T |
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| Q |
213 |
taagaacagaattggatgaattaagtgttcaatataaacatccagttgcagt |
264 |
Q |
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| T |
43206509 |
taagaacaaaattggatgagttgggtgttcaatataaacatccagttgcagt |
43206458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 264
Target Start/End: Complemental strand, 43228225 - 43227968
Alignment:
| Q |
22 |
catcatcatgttcatttcctttttatctgctacaccaatcttctcagattcttcct------ccagttcaaacg---------caatccccaatttcctg |
106 |
Q |
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||||||||| ||||||| |||||||||||| ||| |||||||||||||||| |||| ||| |||||| | ||||||| || || || |
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| T |
43228225 |
catcatcattttcattttctttttatctgcaacatcaatcttctcagattcctcctcctccaccacttcaaatgaccacttatcaatcccaaactttcta |
43228126 |
T |
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| Q |
107 |
gaattagccaaggaacctcaagtttttgattggatggttgatataaggaggaagattcatgagaatcctgaacttggttatgaggaatttgagaccagta |
206 |
Q |
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|| ||||| || || ||| |||||||||| ||||||||| ||||||||| || |||||||||||||||||||| ||||| | ||||||||||| |||| |
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| T |
43228125 |
gatttagctaaagagcctaaagtttttgactggatggtttctataaggagaaaaattcatgagaatcctgaactgagttatcaagaatttgagactagta |
43228026 |
T |
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| Q |
207 |
agcttataagaacagaattggatgaattaagtgttcaatataaacatccagttgcagt |
264 |
Q |
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|||||||||||||| |||||||||| || |||||||||||||||||||||||||||| |
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| T |
43228025 |
agcttataagaacaaaattggatgagttgggtgttcaatataaacatccagttgcagt |
43227968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 43213685 - 43213628
Alignment:
| Q |
23 |
atcatcatgttcatttcctttttatctgctacaccaatcttctcagattcttcctcca |
80 |
Q |
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|||||||| ||||||| |||||||| ||| ||||| || ||||||||||| ||||||| |
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| T |
43213685 |
atcatcattttcattttctttttatgtgcaacacctattttctcagattcctcctcca |
43213628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 128 - 262
Target Start/End: Complemental strand, 5073836 - 5073702
Alignment:
| Q |
128 |
gtttttgattggatggttgatataaggaggaagattcatgagaatcctgaacttggttatgaggaatttgagaccagtaagcttataagaacagaattgg |
227 |
Q |
| |
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|||| |||||||||| | |||| || ||||| |||||||||||||| ||| | |||||||||||||||||||| ||| | | |||||||||||||||| |
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| T |
5073836 |
gtttatgattggatgatcaatatcagaaggaaaattcatgagaatccagaattgggttatgaggaatttgagacaagtgaattgataagaacagaattgg |
5073737 |
T |
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| Q |
228 |
atgaattaagtgttcaatataaacatccagttgca |
262 |
Q |
| |
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|| || | ||| ||| |||||| ||||||||||| |
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| T |
5073736 |
ataaactgagtattccctataaatatccagttgca |
5073702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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