View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_low_87 (Length: 260)
Name: NF1084_low_87
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_87 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 7 - 241
Target Start/End: Original strand, 4167070 - 4167308
Alignment:
| Q |
7 |
gcagcaccacagacacaatggtagagaaacaaattggctaaatccacctcttactcacacaccttggctccttgtgaatggccaatatgtgaatgctgat |
106 |
Q |
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| T |
4167070 |
gcagctccatagacacaatggtagagaaacaaattggctaaatccacctcttactcacacaccttggctccttgtgaatggccaatatgtgaatgctgat |
4167169 |
T |
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| Q |
107 |
gttagtaacnnnnnnnnn----cttaactaacatattaatctttgataacttaagcacttatatttctctcccttattaatattcctaattcttttctac |
202 |
Q |
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| T |
4167170 |
gttagtaactttttttttttttcttaactaacatattaatctttgataacttaaacacttatatttctctcccttattaatattcctaattcttttctac |
4167269 |
T |
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| Q |
203 |
agtttggtgatctcgtgaaatctgtatgcaatgcctaca |
241 |
Q |
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| T |
4167270 |
agtttggtgatctcgtgaaatctgtatgcaatgcctaca |
4167308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 4174212 - 4174277
Alignment:
| Q |
158 |
cacttatatttctctcccttattaatattcctaattcttttctacagtttggtgatctcgtgaaat |
223 |
Q |
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| T |
4174212 |
cacttaaatttctctcccttattaacattcctaattcttttctacaggttgatgatctagtgaaat |
4174277 |
T |
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