View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1084_low_88 (Length: 260)

Name: NF1084_low_88
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1084_low_88
NF1084_low_88
[»] chr6 (1 HSPs)
chr6 (40-208)||(2764823-2764991)
[»] chr5 (1 HSPs)
chr5 (56-123)||(40926263-40926330)
[»] chr7 (1 HSPs)
chr7 (55-123)||(43494935-43495003)
[»] chr4 (2 HSPs)
chr4 (44-123)||(29524963-29525040)
chr4 (40-123)||(37594204-37594287)
[»] chr2 (1 HSPs)
chr2 (44-123)||(11029951-11030030)
[»] chr1 (1 HSPs)
chr1 (40-83)||(3010163-3010206)


Alignment Details
Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 40 - 208
Target Start/End: Complemental strand, 2764991 - 2764823
Alignment:
Q  40 aaaatatgtttgggtacactcacatagttacacaaaatttaaagagaaaataatcaaacaatgttaaatgatgtgacgaaattannnnnnnnnnnnnnnn 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||                    
T  2764991 aaaatatgtttgggtacactcacatagttacacaaaatttaaagagaaaataatcaaacaatgttaaatgatgtgacaaaattatttttcttttattttt 2764892  T
Q  140 nccatttgtgtgtagccaaaattttgtattgcgacatttatataagtagaagtgcaaaaagagaggtat 208  Q
     |||||| |||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  2764891 tccatttttgtgtacccaaaattttgtattgcgacatttatatcagtataagtgcaaaaagagaggtat 2764823  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 40926263 - 40926330
Alignment:
Q  56 cactcacatagttacacaaaatttaaagagaaaataatcaaacaatgttaaatgatgtgacgaaatta 123  Q
    ||||||||||||||||||||||||||||| |||| ||| ||| | || ||||||||||||| ||||||    
T  40926263 cactcacatagttacacaaaatttaaagaaaaaagaattaaatagtggtaaatgatgtgactaaatta 40926330  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 43495003 - 43494935
Alignment:
Q  55 acactcacatagttacacaaaatttaaagagaaaataatcaaacaatgttaaatgatgtgacgaaatta 123  Q
    |||||||| ||||||||||||||||||| | |||| ||| ||| ||| |||||||||||||| ||||||    
T  43495003 acactcacttagttacacaaaatttaaaaaaaaaaaaattaaataatcttaaatgatgtgactaaatta 43494935  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 29525040 - 29524963
Alignment:
Q  44 tatgtttgggtacactcacatagttacacaaaatttaaagagaaaataatcaaacaatgttaaatgatgtgacgaaatta 123  Q
    ||||||||| |||||||||||||| ||||||  ||||||||||||| ||| ||| | |||||||||||||| | ||||||    
T  29525040 tatgtttggatacactcacatagtaacacaa--tttaaagagaaaagaattaaatagtgttaaatgatgtgtctaaatta 29524963  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 37594204 - 37594287
Alignment:
Q  40 aaaatatgtttgggtacactcacatagttacacaaaatttaaagagaaaataatcaaacaatgttaaatgatgtgacgaaatta 123  Q
    ||||||||||||   |||||||||||   ||| ||||||||||||||||||||| ||| |||||||| |||| |||| ||||||    
T  37594204 aaaatatgtttgaacacactcacatacacacaaaaaatttaaagagaaaataattaaataatgttaattgatatgactaaatta 37594287  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 11029951 - 11030030
Alignment:
Q  44 tatgtttgggtacactcacatagttacacaaaatttaaagagaaaataatcaaacaatgttaaatgatgtgacgaaatta 123  Q
    ||||||| || ||||| |||| ||| |||||||||||||||||||| ||  ||| | | |||||||||||||| ||||||    
T  11029951 tatgtttaggcacactaacatggttccacaaaatttaaagagaaaagaactaaatagtattaaatgatgtgactaaatta 11030030  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 3010206 - 3010163
Alignment:
Q  40 aaaatatgtttgggtacactcacatagttacacaaaatttaaag 83  Q
    ||||||||| |||| ||| |||||||||||||||||||||||||    
T  3010206 aaaatatgtctgggcacattcacatagttacacaaaatttaaag 3010163  T

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