View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1084_low_89 (Length: 259)

Name: NF1084_low_89
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1084_low_89
NF1084_low_89
[»] chr1 (14 HSPs)
chr1 (87-249)||(28674764-28674925)
chr1 (146-208)||(2784561-2784623)
chr1 (117-187)||(5898229-5898299)
chr1 (117-205)||(18190071-18190159)
chr1 (145-201)||(23636040-23636096)
chr1 (158-205)||(609462-609509)
chr1 (155-221)||(6427342-6427408)
chr1 (149-238)||(2896116-2896205)
chr1 (156-205)||(12993202-12993251)
chr1 (144-201)||(29163371-29163428)
chr1 (117-206)||(40258896-40258985)
chr1 (117-174)||(43492457-43492514)
chr1 (149-205)||(19637776-19637832)
chr1 (117-205)||(38078624-38078712)
[»] chr6 (13 HSPs)
chr6 (110-185)||(26314590-26314665)
chr6 (118-205)||(9658887-9658974)
chr6 (155-206)||(14721248-14721299)
chr6 (117-202)||(13360336-13360420)
chr6 (156-205)||(15443703-15443752)
chr6 (114-205)||(7977790-7977881)
chr6 (155-205)||(9617442-9617492)
chr6 (155-205)||(24115848-24115898)
chr6 (117-187)||(28152124-28152194)
chr6 (155-204)||(9629392-9629441)
chr6 (117-185)||(33419201-33419270)
chr6 (149-201)||(7377991-7378043)
chr6 (159-223)||(30866149-30866213)
[»] scaffold0022 (1 HSPs)
scaffold0022 (117-206)||(90850-90939)
[»] chr3 (8 HSPs)
chr3 (155-207)||(7614416-7614468)
chr3 (126-205)||(45451561-45451640)
chr3 (118-208)||(21419420-21419509)
chr3 (155-223)||(47362552-47362620)
chr3 (160-202)||(27097065-27097107)
chr3 (148-205)||(20691327-20691384)
chr3 (138-205)||(11251986-11252051)
chr3 (117-205)||(55401083-55401171)
[»] chr7 (11 HSPs)
chr7 (126-205)||(22484033-22484112)
chr7 (126-203)||(3554478-3554555)
chr7 (117-205)||(598216-598304)
chr7 (117-212)||(21880153-21880248)
chr7 (150-205)||(24146824-24146879)
chr7 (117-164)||(33994261-33994308)
chr7 (158-208)||(27732243-27732293)
chr7 (156-205)||(23849460-23849509)
chr7 (155-205)||(19206058-19206108)
chr7 (149-205)||(3721101-3721157)
chr7 (133-205)||(4909159-4909231)
[»] chr5 (5 HSPs)
chr5 (155-205)||(22423813-22423863)
chr5 (153-205)||(23287348-23287400)
chr5 (155-205)||(17925173-17925223)
chr5 (155-205)||(18592081-18592131)
chr5 (158-208)||(30098331-30098381)
[»] chr4 (6 HSPs)
chr4 (117-205)||(8423681-8423769)
chr4 (133-204)||(9996849-9996920)
chr4 (148-212)||(11135288-11135352)
chr4 (117-205)||(21345496-21345584)
chr4 (149-205)||(33950144-33950200)
chr4 (116-164)||(34306766-34306814)
[»] chr8 (14 HSPs)
chr8 (138-205)||(14134707-14134774)
chr8 (148-205)||(12985400-12985457)
chr8 (121-205)||(20679362-20679446)
chr8 (155-206)||(4786339-4786390)
chr8 (150-205)||(12606825-12606880)
chr8 (161-207)||(8798838-8798884)
chr8 (156-205)||(7658471-7658520)
chr8 (132-205)||(26434188-26434261)
chr8 (167-212)||(38278188-38278233)
chr8 (168-204)||(9382981-9383017)
chr8 (156-244)||(12570736-12570824)
chr8 (157-205)||(31236580-31236628)
chr8 (139-207)||(33405369-33405437)
chr8 (158-206)||(37380949-37380997)
[»] chr2 (9 HSPs)
chr2 (155-205)||(31026703-31026753)
chr2 (117-165)||(27084317-27084365)
chr2 (154-205)||(34331395-34331446)
chr2 (160-199)||(35973949-35973988)
chr2 (155-208)||(17077013-17077065)
chr2 (167-220)||(35447900-35447953)
chr2 (163-208)||(41942110-41942155)
chr2 (117-205)||(18840976-18841064)
chr2 (173-221)||(19959807-19959855)
[»] scaffold0110 (1 HSPs)
scaffold0110 (156-208)||(28855-28907)
[»] scaffold0050 (1 HSPs)
scaffold0050 (117-207)||(70284-70374)
[»] scaffold0053 (1 HSPs)
scaffold0053 (116-164)||(8847-8895)


Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 87 - 249
Target Start/End: Complemental strand, 28674925 - 28674764
Alignment:
Q  87 gagttgaatatagggcacatacgctttttagattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatg 186  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||| ||||||||||||||| |||||||||||| ||||||||||||||| |||||||||    
T  28674925 gagttgaatatagggcacatacactttt-agattaggcgtgtctcagtgttggacaagtgtcgtgtctgacaccaacatatataattatactgaattatg 28674827  T
Q  187 tagttttcttaaattattaacgatgttagcgtgtcggcgtctatgttgtgtctaatgtctgtg 249  Q
    || |||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  28674826 taattttctcaaattattaacggtgttagcgtgtcggcgtctatgttgtgtctagtgtctgtg 28674764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 2784623 - 2784561
Alignment:
Q  146 gttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaacg 208  Q
    ||||||||||||||||||| ||||||||||| | ||||||||  |||||||||||| ||||||    
T  2784623 gttgtgtctgacaccgacacatataattatactcaattatgtgattttcttaaatttttaacg 2784561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 5898229 - 5898299
Alignment:
Q  117 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgt 187  Q
    |||||| | |||| |||||||||||| |||| |||||||||||||||  ||||||||| | ||||||||||    
T  5898229 gattagacgtgtcccggtgttggacacgtgtcgtgtctgacaccgacgcatataattacactgaattatgt 5898299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 18190071 - 18190159
Alignment:
Q  117 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    |||||||  |||| |||||| ||||| ||||||||||||||| |||||  | |||||| | ||||||||||| |||| | |||||||||    
T  18190071 gattaggtgtgtcccggtgtcggacacgtgttgtgtctgacatcgacacttgtaattacactgaattatgtaattttttcaaattatta 18190159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 23636040 - 23636096
Alignment:
Q  145 tgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaatt 201  Q
    |||||||||||||||||||| ||| ||||| | ||||||||||| |||||| |||||    
T  23636040 tgttgtgtctgacaccgacacatacaattacactgaattatgtaattttctcaaatt 23636096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 609462 - 609509
Alignment:
Q  158 accgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    |||||||||||| ||||| |||||||||||| |||||| |||||||||    
T  609462 accgacatatatgattatgttgaattatgtaattttctcaaattatta 609509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 6427408 - 6427342
Alignment:
Q  155 gacaccgacatatataattatattgaattatgtagttttcttaaattattaacgatgttagcgtgtc 221  Q
    |||||| ||| ||||||||| ||||||||||||  |||||| ||||||||| || |||| |||||||    
T  6427408 gacaccaacacatataattacattgaattatgtgattttctcaaattattagcggtgttggcgtgtc 6427342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 2896116 - 2896205
Alignment:
Q  149 gtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaacgatgttagcgtgtcggcgtctatgttgtgtc 238  Q
    ||||||||||||||||||||||  || | ||||||||||  |||||| ||||||||| || |||  ||||||| | |||  |||||||||    
T  2896116 gtgtctgacaccgacatatatagctacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtccgtgttgtgtc 2896205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 12993251 - 12993202
Alignment:
Q  156 acaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    ||||||||||||||||||| ||||||||| ||| ||| | ||||||||||    
T  12993251 acaccgacatatataattacattgaattacgtaatttacgtaaattatta 12993202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 29163371 - 29163428
Alignment:
Q  144 gtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaatt 201  Q
    |||| ||||| |||||||||| ||||||||| ||||||||||||  ||||| ||||||    
T  29163371 gtgtcgtgtccgacaccgacacatataattaaattgaattatgtgattttcctaaatt 29163428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 40258896 - 40258985
Alignment:
Q  117 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaa 206  Q
    |||||||| ||||  ||||| ||||| |||| ||||||||||||||||  | |||||| | ||||||||||  |||| | ||||||||||    
T  40258896 gattaggcgtgtcctggtgtcggacaggtgtcgtgtctgacaccgacacttgtaattacactgaattatgtgattttttcaaattattaa 40258985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 43492457 - 43492514
Alignment:
Q  117 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataatta 174  Q
    |||||||| |||  |||||| ||||| ||||||||||||||||||||| | |||||||    
T  43492457 gattaggcgtgtgccggtgtcggacatgtgttgtgtctgacaccgacacacataatta 43492514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 19637832 - 19637776
Alignment:
Q  149 gtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    ||||| |||||||||| |||| |||| ||||||| ||||  ||||||||||||||||    
T  19637832 gtgtccgacaccgacacatatgattacattgaataatgtcattttcttaaattatta 19637776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 38078624 - 38078712
Alignment:
Q  117 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    |||||||| ||||  ||||||| ||| |||| ||||| ||||||||||  | |||||| ||||||||||||  |||| | |||||||||    
T  38078624 gattaggcgtgtcctggtgttgaacatgtgtcgtgtccgacaccgacacttgtaattacattgaattatgtgattttttcaaattatta 38078712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 185
Target Start/End: Original strand, 26314590 - 26314665
Alignment:
Q  110 ctttttagattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattat 185  Q
    |||||| ||||| || ||| |||||||||||||||||| || |||||| |||||||||||||||| ||||||||||    
T  26314590 ctttttcgattaagcttgtttcggtgttggacaagtgtcgtatctgaccccgacatatataattacattgaattat 26314665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 205
Target Start/End: Complemental strand, 9658974 - 9658887
Alignment:
Q  118 attaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    ||||||| |||  ||||||  |||| |||| |||||| ||||||||| ||||||||| | ||||||||||  ||||||||||||||||    
T  9658974 attaggcgtgttccggtgtcagacacgtgtcgtgtctaacaccgacaaatataattacactgaattatgtgattttcttaaattatta 9658887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 14721299 - 14721248
Alignment:
Q  155 gacaccgacatatataattatattgaattatgtagttttcttaaattattaa 206  Q
    |||||| ||| ||||||||||| ||||||||||| |||||||||||||||||    
T  14721299 gacaccaacacatataattatagtgaattatgtaattttcttaaattattaa 14721248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 13360336 - 13360420
Alignment:
Q  117 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaatta 202  Q
    |||||||| |||||| |||| |||||  |||||||||||||||||| | ||||||||| | ||||||||||  |||||| ||||||    
T  13360336 gattaggcgtgtctcagtgtcggacat-tgttgtgtctgacaccgaaacatataattacactgaattatgtgattttctcaaatta 13360420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 15443752 - 15443703
Alignment:
Q  156 acaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    ||||| ||||||||||||||||||||||||||  |||||| |||||||||    
T  15443752 acaccaacatatataattatattgaattatgttattttctcaaattatta 15443703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 7977790 - 7977881
Alignment:
Q  114 ttagattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    ||||||||||| ||| ||| ||| |||||  ||||||||| ||||||||||  | |||||| | ||||||||||| |||| | |||||||||    
T  7977790 ttagattaggcgtgtttcgttgtcggacatatgttgtgtccgacaccgacacttgtaattacactgaattatgtaattttttcaaattatta 7977881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 9617492 - 9617442
Alignment:
Q  155 gacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    |||||||||| ||||||||| ||||||||||||  |||||| |||||||||    
T  9617492 gacaccgacacatataattacattgaattatgtgattttctcaaattatta 9617442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 24115848 - 24115898
Alignment:
Q  155 gacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    |||||| ||||||||||||||||||||||||||  |||| | |||||||||    
T  24115848 gacaccaacatatataattatattgaattatgtgattttttgaaattatta 24115898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 28152194 - 28152124
Alignment:
Q  117 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgt 187  Q
    ||||||||||||| |||||| ||||| |||| ||||| ||||||||||  | |||||| | ||||||||||    
T  28152194 gattaggcctgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgt 28152124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 9629441 - 9629392
Alignment:
Q  155 gacaccgacatatataattatattgaattatgtagttttcttaaattatt 204  Q
    |||||||||| ||||||||| ||||||||||||  |||||| ||||||||    
T  9629441 gacaccgacacatataattacattgaattatgtgattttctcaaattatt 9629392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 33419270 - 33419201
Alignment:
Q  117 gattaggcctgtctcggtgttggacaagtgttg-tgtctgacaccgacatatataattatattgaattat 185  Q
    |||||||| ||||  ||||||||||| | |||| ||||||||||| ||| ||||||||| ||||||||||    
T  33419270 gattaggcatgtcctggtgttggacacgcgttggtgtctgacaccaacacatataattacattgaattat 33419201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 7378043 - 7377991
Alignment:
Q  149 gtgtctgacaccgacatatataattatattgaattatgtagttttcttaaatt 201  Q
    ||||| |||||||||| ||||||||| ||||||||||||  |||||| |||||    
T  7378043 gtgtccgacaccgacacatataattacattgaattatgtgattttctcaaatt 7377991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 30866149 - 30866213
Alignment:
Q  159 ccgacatatataattatattgaattatgtagttttcttaaattattaacgatgttagcgtgtcgg 223  Q
    |||||| ||||||||| ||||||||||||  |||||| ||||||||| || |||| | |||||||    
T  30866149 ccgacacatataattacattgaattatgtgattttctcaaattattagcggtgttggtgtgtcgg 30866213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 90939 - 90850
Alignment:
Q  117 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaa 206  Q
    |||||||| ||| | ||||| ||||| ||||||||||||||| ||||||||||||||| | |||||||| |  |||||| ||||||||||    
T  90939 gattaggcgtgttttggtgtcggacacgtgttgtgtctgacatcgacatatataattacactgaattatatgattttctcaaattattaa 90850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 7614416 - 7614468
Alignment:
Q  155 gacaccgacatatataattatattgaattatgtagttttcttaaattattaac 207  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||||||    
T  7614416 gacaccgacatatataattatactgaattatgtgattttcttaaattattaac 7614468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 45451640 - 45451561
Alignment:
Q  126 tgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    ||||||||||| ||||| |||| ||||| |||||||||| |||| |||||| |||| |||||  |||||| |||||||||    
T  45451640 tgtctcggtgtcggacatgtgtcgtgtccgacaccgacacatattattatactgaagtatgtgattttctcaaattatta 45451561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 208
Target Start/End: Original strand, 21419420 - 21419509
Alignment:
Q  118 attaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaacg 208  Q
    ||||||| ||| ||||||| ||||| || | ||||  |||||| ||||||||||||| |||||||||| |  |||||||||||||||||||    
T  21419420 attaggcgtgtttcggtgt-ggacatgtatggtgttcgacaccaacatatataattacattgaattatattattttcttaaattattaacg 21419509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 47362620 - 47362552
Alignment:
Q  155 gacaccgacatatataattatattgaattatgtagttttcttaaattattaacgatgttagcgtgtcgg 223  Q
    ||||| ||||| |||||||| ||| ||||||||| ||||||||||||||||  ||||||  ||||||||    
T  47362620 gacactgacatgtataattacattcaattatgtaattttcttaaattattactgatgttgacgtgtcgg 47362552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 27097065 - 27097107
Alignment:
Q  160 cgacatatataattatattgaattatgtagttttcttaaatta 202  Q
    ||||||||||||||| ||||||||||||| |||||| ||||||    
T  27097065 cgacatatataattaaattgaattatgtaattttctcaaatta 27097107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 20691384 - 20691327
Alignment:
Q  148 tgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    ||||||||||||||||| |||| |||| | ||||||||||  |||||| |||||||||    
T  20691384 tgtgtctgacaccgacacatatgattacactgaattatgtcattttctcaaattatta 20691327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 11252051 - 11251986
Alignment:
Q  138 ggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    ||||| ||||||||||||||||||||  | ||||||| | ||||||||||  |||||| |||||||||    
T  11252051 ggacacgtgttgtgtctgacaccgac--acataattacactgaattatgtgattttctcaaattatta 11251986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 205
Target Start/End: Complemental strand, 55401171 - 55401083
Alignment:
Q  117 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    |||||||| ||||||||||| ||||| |||| ||||| ||||||||||  | |||||| | | ||||||||  |||| | |||||||||    
T  55401171 gattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaattatgtgattttttcaaattatta 55401083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 22484112 - 22484033
Alignment:
Q  126 tgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    ||||||| ||| ||||| ||||  ||||||||||||||| ||||||||||| ||||||||| | |||||| |||||||||    
T  22484112 tgtctcgatgtcggacatgtgtcatgtctgacaccgacacatataattatactgaattatgcaattttctaaaattatta 22484033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 3554478 - 3554555
Alignment:
Q  126 tgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattat 203  Q
    |||||| ||||| || | |||| ||||| ||||||||||| |||||||| ||| ||||||||| ||||||||||||||    
T  3554478 tgtctcagtgttagatatgtgtcgtgtccgacaccgacatctataattacattaaattatgtaattttcttaaattat 3554555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 205
Target Start/End: Complemental strand, 598304 - 598216
Alignment:
Q  117 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    |||||||| |||| |||||| ||||| |||| ||||||||||||||||  || ||||| ||| ||||| ||  ||||||||||||||||    
T  598304 gattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacttacaattacatttaattacgtgattttcttaaattatta 598216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 212
Target Start/End: Complemental strand, 21880248 - 21880153
Alignment:
Q  117 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaacgatgt 212  Q
    |||||||| ||||  ||||| ||||| |||| ||||| ||||||||||  | |||||| | ||||||||||| |||||| ||||||||| ||||||    
T  21880248 gattaggcgtgtcctggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtaattttctcaaattattagcgatgt 21880153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 24146879 - 24146824
Alignment:
Q  150 tgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    |||| |||||||||| ||||||||||||||||||||||  |||||| |||||||||    
T  24146879 tgtcagacaccgacacatataattatattgaattatgtgattttctaaaattatta 24146824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 33994308 - 33994261
Alignment:
Q  117 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgaca 164  Q
    |||||||| ||||||||||||||||| |||| ||||||||||||||||    
T  33994308 gattaggcgtgtctcggtgttggacatgtgtcgtgtctgacaccgaca 33994261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 27732243 - 27732293
Alignment:
Q  158 accgacatatataattatattgaattatgtagttttcttaaattattaacg 208  Q
    ||||||| ||||||||| | ||||||||||| |||||||||||||||||||    
T  27732243 accgacacatataattacactgaattatgtaattttcttaaattattaacg 27732293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 23849460 - 23849509
Alignment:
Q  156 acaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    ||||||||| ||||||||||| ||||||||||  ||||||||||||||||    
T  23849460 acaccgacacatataattatactgaattatgtgtttttcttaaattatta 23849509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 19206108 - 19206058
Alignment:
Q  155 gacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    |||||||||| ||||||||||| ||||||||||  |||||| |||||||||    
T  19206108 gacaccgacacatataattataatgaattatgtgattttctcaaattatta 19206058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 3721157 - 3721101
Alignment:
Q  149 gtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    ||||| |||||||||| ||||||||||| | ||||||||  |||||| |||||||||    
T  3721157 gtgtccgacaccgacacatataattatactaaattatgtgattttctcaaattatta 3721101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 4909231 - 4909159
Alignment:
Q  133 gtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    |||||||| | || ||||||| ||||| |||| |||| |||| | ||||||||||| |||||| |||||||||    
T  4909231 gtgttggatatgtattgtgtccgacactgacacatatgattacaatgaattatgtaattttctcaaattatta 4909159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 22423813 - 22423863
Alignment:
Q  155 gacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    |||||||||||||||||||||||||||||||||  |||||| |||||||||    
T  22423813 gacaccgacatatataattatattgaattatgtgattttctcaaattatta 22423863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 23287348 - 23287400
Alignment:
Q  153 ctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    ||||||| |||| ||||||||||||||||||||||  ||||| ||||||||||    
T  23287348 ctgacactgacacatataattatattgaattatgtcattttcctaaattatta 23287400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 17925173 - 17925223
Alignment:
Q  155 gacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    |||||||||| |||| |||| ||||||||||||  ||||||||||||||||    
T  17925173 gacaccgacacatattattacattgaattatgtgattttcttaaattatta 17925223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 18592131 - 18592081
Alignment:
Q  155 gacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    ||||||| || ||||||||| ||||||||||||| |||||||||| |||||    
T  18592131 gacaccggcacatataattacattgaattatgtaattttcttaaaatatta 18592081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 30098381 - 30098331
Alignment:
Q  158 accgacatatataattatattgaattatgtagttttcttaaattattaacg 208  Q
    |||||||| |||||||| ||||||||||||  |||||| ||||||||||||    
T  30098381 accgacatctataattacattgaattatgtgattttctcaaattattaacg 30098331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 8423681 - 8423769
Alignment:
Q  117 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    |||||||| |||| |||||| |||||  ||| ||||| ||||||||||| |||||||| | ||||||||||  |||||| |||||||||    
T  8423681 gattaggcgtgtcccggtgtcggacagctgtcgtgtccgacaccgacatttataattacactgaattatgtgattttctcaaattatta 8423769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 9996920 - 9996849
Alignment:
Q  133 gtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatt 204  Q
    |||| ||||| ||||| ||||||||||||| | ||||||||||| ||||||||||  |||||| ||||||||    
T  9996920 gtgtcggacacgtgttatgtctgacaccgagacatataattatactgaattatgtgattttctcaaattatt 9996849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 11135288 - 11135352
Alignment:
Q  148 tgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaacgatgt 212  Q
    |||||||||||  |||| || |||||||||||||||||||| |||||| ||| ||||| ||||||    
T  11135288 tgtgtctgacagtgacacatgtaattatattgaattatgtaattttctcaaactattagcgatgt 11135352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 21345496 - 21345584
Alignment:
Q  117 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    |||||||| |||  |||||||||| | || | |||||||||||||||||| || |||| ||||| ||||||  |||| | |||||||||    
T  21345496 gattaggcatgtaccggtgttggatatgtatcgtgtctgacaccgacataaatgattacattgagttatgttattttttcaaattatta 21345584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 33950200 - 33950144
Alignment:
Q  149 gtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    |||||||||||||||| |||| |||| ||| ||||||||  |||||| |||||||||    
T  33950200 gtgtctgacaccgacacatatgattacattaaattatgtgattttctcaaattatta 33950144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 34306766 - 34306814
Alignment:
Q  116 agattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgaca 164  Q
    ||||||||| ||||||||||| ||||| |||| ||||| ||||||||||    
T  34306766 agattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgaca 34306814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 14134774 - 14134707
Alignment:
Q  138 ggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    ||||| |||| |||| ||||||||||||||||||||| | ||||||||||  |||||| |||||||||    
T  14134774 ggacacgtgtcgtgtttgacaccgacatatataattacactgaattatgtgattttctcaaattatta 14134707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 12985457 - 12985400
Alignment:
Q  148 tgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    |||||| ||||||||||||||| |||| ||||||||||||  |||||| |||||||||    
T  12985457 tgtgtccgacaccgacatatatgattacattgaattatgtgattttctcaaattatta 12985400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 20679362 - 20679446
Alignment:
Q  121 aggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    |||| |||| |||||| ||||| |||||| ||||||||||||||  |||||||| | |||| |||||  |||||| |||||||||    
T  20679362 aggcgtgtcccggtgtcggacacgtgttgcgtctgacaccgacacttataattacactgaactatgtgattttctcaaattatta 20679446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 4786339 - 4786390
Alignment:
Q  155 gacaccgacatatataattatattgaattatgtagttttcttaaattattaa 206  Q
    |||||||||| ||||||||| | ||||||||||  |||||||||||||||||    
T  4786339 gacaccgacacatataattacactgaattatgtgattttcttaaattattaa 4786390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 12606825 - 12606880
Alignment:
Q  150 tgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    ||||||||||||||| ||||||||| |||||||||| |  |||||| |||||||||    
T  12606825 tgtctgacaccgacacatataattacattgaattatatgattttctcaaattatta 12606880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 8798838 - 8798884
Alignment:
Q  161 gacatatataattatattgaattatgtagttttcttaaattattaac 207  Q
    |||| ||||||||||||||||||||||  |||||| |||||||||||    
T  8798838 gacacatataattatattgaattatgttattttctcaaattattaac 8798884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 7658520 - 7658471
Alignment:
Q  156 acaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    ||||||||| ||||||||| | ||||||||||| |||||| |||||||||    
T  7658520 acaccgacaaatataattacactgaattatgtaattttctcaaattatta 7658471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 26434261 - 26434188
Alignment:
Q  132 ggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    ||||||||||| || |||||||  |||||||||  | |||||||||||||||||||  |||||| ||| |||||    
T  26434261 ggtgttggacacgtattgtgtccaacaccgacacttttaattatattgaattatgtgattttctcaaactatta 26434188  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 38278188 - 38278233
Alignment:
Q  167 tataattatattgaattatgtagttttcttaaattattaacgatgt 212  Q
    |||||||||||| ||||||||  |||||||||||||||| ||||||    
T  38278188 tataattatattaaattatgtgattttcttaaattattagcgatgt 38278233  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 9383017 - 9382981
Alignment:
Q  168 ataattatattgaattatgtagttttcttaaattatt 204  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  9383017 ataattacattgaattatgtagttttctcaaattatt 9382981  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 244
Target Start/End: Original strand, 12570736 - 12570824
Alignment:
Q  156 acaccgacatatataattatattgaattatgtagttttcttaaattattaacgatgttagcgtgtcggcgtctatgttgtgtctaatgt 244  Q
    ||||| ||||||||||||| | | |||||||   |||||||||||||||| || ||| | |||||||| |||||| | ||||| |||||    
T  12570736 acaccaacatatataattacacttaattatgcgtttttcttaaattattagcggtgtcaacgtgtcggtgtctatatcgtgtccaatgt 12570824  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 31236580 - 31236628
Alignment:
Q  157 caccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    |||||||| ||||||||| ||||||||||||  |||||| |||||||||    
T  31236580 caccgacacatataattacattgaattatgtgattttctcaaattatta 31236628  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 33405369 - 33405437
Alignment:
Q  139 gacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaac 207  Q
    |||| |||| ||||| |||||||||| ||||||||| | | ||||||||  |||||| |||||||||||    
T  33405369 gacatgtgtcgtgtccgacaccgacacatataattacactaaattatgtgtttttctcaaattattaac 33405437  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 37380997 - 37380949
Alignment:
Q  158 accgacatatataattatattgaattatgtagttttcttaaattattaa 206  Q
    ||||||| ||||||||||||||||||||||  || | ||||||||||||    
T  37380997 accgacaaatataattatattgaattatgtgattatgttaaattattaa 37380949  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 31026753 - 31026703
Alignment:
Q  155 gacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    ||||||||||||||| |||| ||||||||||||  ||||||||||||||||    
T  31026753 gacaccgacatatatgattacattgaattatgtcattttcttaaattatta 31026703  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 27084365 - 27084317
Alignment:
Q  117 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacat 165  Q
    |||||||| ||||||||||||||||| |||| ||||| |||||||||||    
T  27084365 gattaggcgtgtctcggtgttggacacgtgtcgtgtccgacaccgacat 27084317  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 34331446 - 34331395
Alignment:
Q  154 tgacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    ||||| ||| ||||||||||||||| |||||| || ||||||||||||||||    
T  34331446 tgacatcgaaatatataattatatttaattatataattttcttaaattatta 34331395  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 35973949 - 35973988
Alignment:
Q  160 cgacatatataattatattgaattatgtagttttcttaaa 199  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  35973949 cgacatatataattatattgaattatgttattttcttaaa 35973988  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 17077013 - 17077065
Alignment:
Q  155 gacaccgacatatataattatattgaattatgtagttttcttaaattattaacg 208  Q
    |||||| |||||||||||||||| ||||||| || |||| ||||||||||||||    
T  17077013 gacaccaacatatataattatatcgaattatataatttt-ttaaattattaacg 17077065  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 35447900 - 35447953
Alignment:
Q  167 tataattatattgaattatgtagttttcttaaattattaacgatgttagcgtgt 220  Q
    |||| ||||| ||||||||||| ||||||| |||||||| |||||| |||||||    
T  35447900 tatagttatactgaattatgtaattttctttaattattagcgatgtcagcgtgt 35447953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 41942155 - 41942110
Alignment:
Q  163 catatataattatattgaattatgtagttttcttaaattattaacg 208  Q
    |||||||||||||| ||||||||||| |||||| ||||| ||||||    
T  41942155 catatataattatactgaattatgtaattttctcaaatttttaacg 41942110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 18840976 - 18841064
Alignment:
Q  117 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattatta 205  Q
    |||||||  |||| |||||| ||||| |||| ||||||||||||||||  | |||||| | | ||||||||| |||| | |||||||||    
T  18840976 gattaggtgtgtcccggtgtcggacatgtgtcgtgtctgacaccgacacttgtaattacacttaattatgtaattttttcaaattatta 18841064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 19959855 - 19959807
Alignment:
Q  173 tatattgaattatgtagttttcttaaattattaacgatgttagcgtgtc 221  Q
    |||||||||||||||  |||| | |||||||||||||||| ||||||||    
T  19959855 tatattgaattatgtgattttgtcaaattattaacgatgtcagcgtgtc 19959807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 28907 - 28855
Alignment:
Q  156 acaccgacatatataattatattgaattatgtagttttcttaaattattaacg 208  Q
    ||||||||| ||||||||| |||||||||||   |||||||||||||||||||    
T  28907 acaccgacacatataattacattgaattatgcgattttcttaaattattaacg 28855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 70374 - 70284
Alignment:
Q  117 gattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgacatatataattatattgaattatgtagttttcttaaattattaac 207  Q
    |||||||| ||||  ||||| ||||| |||| ||||| ||||||||||  |||||||| | ||||||||||  |||| | |||||||||||    
T  70374 gattaggcatgtcctggtgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaattatgttattttttcaaattattaac 70284  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 8895 - 8847
Alignment:
Q  116 agattaggcctgtctcggtgttggacaagtgttgtgtctgacaccgaca 164  Q
    ||||||||| ||||||||||| ||||| |||| ||||| ||||||||||    
T  8895 agattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgaca 8847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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