View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1084_low_9 (Length: 540)
Name: NF1084_low_9
Description: NF1084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1084_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 7e-69; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 279 - 533
Target Start/End: Complemental strand, 13050921 - 13050652
Alignment:
| Q |
279 |
atgcacttttcatctgtcct-----cctgtggcagaaaatggatttgaa--------gtcactcgttgaagcgctgtatggtcttagta-atgggatcgt |
364 |
Q |
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| T |
13050921 |
atgcacttttcatctgtcctagtatcctgtggcagaaaatggatttgaatttcaggagtcacttgttgaagcgctatatggtcttagcatatgggatcgt |
13050822 |
T |
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| Q |
365 |
ttgcaagcatcggtaaacgttttgaaaatgcttactgagtagaactctgcaggttgcaacaagaaggagaaatgactaatcacgttagggcggttaatgt |
464 |
Q |
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| T |
13050821 |
ttgcaagcattggtaaacgttttgaaaatgcttactgagcagaactctacaggtggcaataagaaggagaaatgactaatcatgttaggttggttgatgt |
13050722 |
T |
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| Q |
465 |
gccaactggttaatagtcacattcgaataatatggggcttct-gtttgtctccaactactacctatgcta |
533 |
Q |
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| T |
13050721 |
gacaactggttaattgtcacattcaaataatacggggcttctggtttgtctccaactgctacctgtgcta |
13050652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 9014726 - 9014895
Alignment:
| Q |
29 |
atatgatagatacacttaacttcaaaaactgattctcct--gtagtgcaaccaaccat----tgttcaagaatatctttctatcgtgtat--gcttcagc |
120 |
Q |
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| T |
9014726 |
atatgatagatacactttacttcaaaaactgattctcctacgtagtgcaaccaactatatattattcaagaatatctttctatcgtgtatatgctccagc |
9014825 |
T |
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| Q |
121 |
aactgcttactagattcatctgtgcatttgacttataggcatttggacctagcatgatgccttgtaaagt |
190 |
Q |
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| T |
9014826 |
aactgcttactagattcatctgtgcacttgacttataggcatttggacctagaatgatgccttgtaaagt |
9014895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 52 - 176
Target Start/End: Complemental strand, 13051814 - 13051690
Alignment:
| Q |
52 |
aaaaactgattctcctgtagtgcaaccaaccattgttcaagaatatctttctatcgtgtatgcttcagcaactgcttactagattcatctgtgcatttga |
151 |
Q |
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| T |
13051814 |
aaaaactgattctcatgtagtgcagccaactattatttgagaatgtctttctatcttgtatgctccaacaactgcttactagattcatctgtgcatttga |
13051715 |
T |
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| Q |
152 |
cttataggcatttggacctagcatg |
176 |
Q |
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| T |
13051714 |
cttataggcatttggacctatcatg |
13051690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 171 - 279
Target Start/End: Complemental strand, 13051062 - 13050953
Alignment:
| Q |
171 |
agcatgatgccttgtaaagttagt-gttgaagatagatggtggccattcatcaagacctagataccgcagcatattcaggccagtctagaaaaccctaca |
269 |
Q |
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| T |
13051062 |
agcatgctgccttgtaaagtcagtagttgaagatagatggtggccattcattaagaccaagataccaaagcctattcaggtctgtctaaaaaacctttca |
13050963 |
T |
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| Q |
270 |
taatatcata |
279 |
Q |
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| T |
13050962 |
ttatatcata |
13050953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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